Wall clock time and date at job start Mon Mar 30 2020 07:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46985 * 2 1 4 4 H 1.09000 * 109.47353 * 304.99649 * 3 2 1 5 5 C 1.52994 * 109.47462 * 65.00119 * 3 2 1 6 6 C 1.53007 * 109.46733 * 185.00097 * 3 2 1 7 7 H 1.08996 * 109.47232 * 299.99628 * 6 3 2 8 8 C 1.52995 * 109.47324 * 60.00151 * 6 3 2 9 9 N 1.46904 * 109.46825 * 179.97438 * 6 3 2 10 10 C 1.46902 * 110.99855 * 154.99940 * 9 6 3 11 11 C 1.50700 * 109.47268 * 180.02562 * 10 9 6 12 12 C 1.38132 * 120.03144 * 260.00414 * 11 10 9 13 13 C 1.38275 * 120.06720 * 180.02562 * 12 11 10 14 14 C 1.38327 * 120.13720 * 359.97016 * 13 12 11 15 15 C 1.38072 * 120.07136 * 0.02562 * 14 13 12 16 16 C 1.38854 * 120.03800 * 80.01645 * 11 10 9 17 17 O 1.35756 * 120.06718 * 359.97438 * 16 11 10 18 18 C 1.34831 * 117.00019 * 174.40099 * 17 16 11 19 19 H 1.07994 * 119.99583 * 5.06418 * 18 17 16 20 20 C 1.38651 * 119.99899 * 185.06419 * 18 17 16 21 21 N 1.31556 * 119.99855 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99922 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47090 * 59.99856 * 22 20 18 24 24 H 1.48496 * 109.47310 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46789 * 300.00021 * 22 20 18 26 26 H 1.08999 * 109.46926 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46952 * 300.00253 * 1 2 3 28 28 H 1.09000 * 109.46463 * 59.99988 * 1 2 3 29 29 H 1.09004 * 109.46907 * 239.99666 * 2 1 3 30 30 H 1.08993 * 109.47033 * 120.00274 * 2 1 3 31 31 H 1.08999 * 109.47391 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.46824 * 300.00017 * 5 3 2 33 33 H 1.09000 * 109.47220 * 59.99448 * 5 3 2 34 34 H 1.09000 * 109.47394 * 60.00061 * 8 6 3 35 35 H 1.09004 * 109.47510 * 179.97438 * 8 6 3 36 36 H 1.08999 * 109.47022 * 300.00058 * 8 6 3 37 37 H 1.00904 * 111.00033 * 31.04566 * 9 6 3 38 38 H 1.08998 * 109.47330 * 60.00098 * 10 9 6 39 39 H 1.08999 * 109.46972 * 299.99801 * 10 9 6 40 40 H 1.07998 * 119.96532 * 0.02562 * 12 11 10 41 41 H 1.08000 * 119.93246 * 179.97438 * 13 12 11 42 42 H 1.08002 * 119.96737 * 179.72908 * 14 13 12 43 43 H 1.08002 * 120.03974 * 179.97438 * 15 14 13 44 44 H 0.97002 * 119.99818 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4442 -0.1258 7 1 3.9995 0.9053 0.7160 8 6 3.9697 0.7602 -1.4331 9 7 4.0545 2.8293 -0.1264 10 6 5.4451 2.8963 0.3427 11 6 5.9114 4.3292 0.3289 12 6 6.6908 4.7926 -0.7132 13 6 7.1195 6.1072 -0.7263 14 6 6.7691 6.9622 0.3030 15 6 5.9902 6.5051 1.3474 16 6 5.5583 5.1851 1.3637 17 8 4.7922 4.7326 2.3891 18 6 4.5828 5.5799 3.4169 19 1 4.9477 6.5948 3.3629 20 6 3.8989 5.1479 4.5430 21 7 3.4539 3.9117 4.6085 22 14 3.6081 6.3219 5.9666 23 1 2.8198 7.4881 5.4934 24 1 2.8590 5.6217 7.0406 25 1 4.9139 6.7895 6.4972 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.9990 3.1541 1.3075 32 1 0.5490 2.1252 1.3968 33 1 2.0699 1.5875 2.1491 34 1 3.5351 1.2993 -2.2749 35 1 5.0560 0.7619 -1.5229 36 1 3.6063 -0.2674 -1.4331 37 1 3.4569 3.4243 0.4277 38 1 6.0792 2.3011 -0.3144 39 1 5.5052 2.5048 1.3581 40 1 6.9655 4.1275 -1.5185 41 1 7.7291 6.4671 -1.5419 42 1 7.1091 7.9873 0.2923 43 1 5.7173 7.1731 2.1510 44 1 2.9758 3.6094 5.3965 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042553708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:43 Heat of formation + Delta-G solvation = -24.277666 kcal Electronic energy + Delta-G solvation = -22175.198409 eV Core-core repulsion = 19092.360404 eV Total energy + Delta-G solvation = -3082.838006 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.20733 -37.92852 -36.35160 -34.29980 -32.28588 -31.29543 -29.19199 -29.04616 -28.43153 -25.39259 -24.45078 -24.08067 -21.55096 -21.30081 -20.32280 -19.32331 -17.92206 -16.81021 -15.80909 -15.08822 -14.72837 -14.57691 -14.38531 -14.30105 -13.79263 -13.49566 -13.36128 -13.10850 -12.86825 -12.72000 -12.37002 -11.94872 -11.73521 -11.68849 -11.62467 -11.48890 -11.26240 -11.11292 -10.96498 -10.84578 -10.65063 -10.57869 -10.41404 -10.25642 -10.07459 -9.93688 -9.29890 -8.83536 -8.09104 -7.74392 -7.17650 -6.45293 -4.03522 2.19515 2.42469 3.12666 3.13517 3.15594 3.96222 4.49601 4.83291 5.06360 5.11257 5.12029 5.22361 5.31329 5.48456 5.61216 5.65154 5.68929 5.73711 5.81115 5.88945 5.93649 5.99641 6.03035 6.08799 6.13016 6.21231 6.22265 6.30623 6.33570 6.38193 6.45688 6.48713 6.60671 6.71852 6.75323 6.90309 6.95523 7.12936 7.30549 7.40689 7.45467 7.68677 7.87933 7.97993 8.09875 9.01226 9.69986 10.71877 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.006814 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.460137 B = 4108.032962 C = 6248.510027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.091 4.091 4 H 0.072 0.928 5 C -0.148 4.148 6 C 0.087 3.913 7 H 0.041 0.959 8 C -0.138 4.138 9 N -0.682 5.682 10 C 0.119 3.881 11 C -0.156 4.156 12 C -0.061 4.061 13 C -0.214 4.214 14 C -0.076 4.076 15 C -0.234 4.234 16 C 0.157 3.843 17 O -0.176 6.176 18 C -0.391 4.391 19 H 0.089 0.911 20 C 0.042 3.958 21 N -0.860 5.860 22 Si 0.936 3.064 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.271 1.271 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.352 0.648 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.125 0.875 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 -4.216 -7.852 8.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.110 4.110 4 H 0.090 0.910 5 C -0.206 4.206 6 C -0.023 4.023 7 H 0.059 0.941 8 C -0.196 4.196 9 N -0.316 5.316 10 C -0.009 4.009 11 C -0.157 4.157 12 C -0.079 4.079 13 C -0.233 4.233 14 C -0.095 4.095 15 C -0.254 4.254 16 C 0.103 3.897 17 O -0.079 6.079 18 C -0.468 4.468 19 H 0.106 0.894 20 C -0.162 4.162 21 N -0.495 5.495 22 Si 0.761 3.239 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.196 1.196 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.174 0.826 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.143 0.857 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.172 -4.595 -8.282 9.543 hybrid contribution -0.161 0.680 1.738 1.873 sum -1.333 -3.915 -6.543 7.741 Atomic orbital electron populations 1.21812 0.96210 1.00975 1.01935 1.21614 0.95611 0.96658 1.01783 1.21299 0.94794 0.95935 0.98937 0.90998 1.21867 1.00593 1.01536 0.96567 1.21479 0.93914 0.90218 0.96689 0.94136 1.21846 1.00902 0.99027 0.97832 1.60772 1.03422 1.07966 1.59434 1.20510 0.89498 0.92766 0.98125 1.18876 1.05306 0.95353 0.96208 1.20533 0.96306 0.95157 0.95942 1.20584 1.07421 0.94628 1.00672 1.20748 0.96656 0.98266 0.93805 1.21145 1.06059 0.96470 1.01678 1.19215 0.89798 0.91687 0.88979 1.83942 1.57769 1.41041 1.25193 1.21224 1.37627 0.94025 0.93914 0.89370 1.25191 0.96378 0.96847 0.97769 1.70008 1.34897 1.15373 1.29217 0.85851 0.78825 0.79360 0.79832 1.19606 1.20377 1.19640 0.93298 0.92400 0.92980 0.91892 0.92191 0.91717 0.93053 0.92325 0.92405 0.93212 0.92922 0.82590 0.91918 0.94204 0.87150 0.87772 0.87686 0.85691 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.67 37.16 0.36 -1.35 16 2 C -0.12 -1.48 5.19 -26.73 -0.14 -1.62 16 3 C -0.09 -1.34 2.11 -90.62 -0.19 -1.53 16 4 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 5 C -0.15 -2.53 8.71 37.15 0.32 -2.21 16 6 C 0.09 1.39 2.23 -67.71 -0.15 1.24 16 7 H 0.04 0.71 7.80 -51.93 -0.41 0.30 16 8 C -0.14 -1.87 9.07 37.16 0.34 -1.53 16 9 N -0.68 -12.68 6.30 -107.99 -0.68 -13.36 16 10 C 0.12 2.34 5.28 -4.98 -0.03 2.31 16 11 C -0.16 -3.27 5.41 -104.43 -0.56 -3.84 16 12 C -0.06 -1.12 9.66 -39.61 -0.38 -1.51 16 13 C -0.21 -3.82 10.04 -39.53 -0.40 -4.22 16 14 C -0.08 -1.44 10.04 -39.61 -0.40 -1.83 16 15 C -0.23 -5.13 9.17 -39.40 -0.36 -5.49 16 16 C 0.16 3.72 6.62 -39.11 -0.26 3.46 16 17 O -0.18 -4.73 8.95 0.03 0.00 -4.73 16 18 C -0.39 -10.58 9.49 30.88 0.29 -10.29 16 19 H 0.09 2.25 5.20 -52.49 -0.27 1.98 16 20 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 21 N -0.86 -23.96 13.67 55.48 0.76 -23.20 16 22 Si 0.94 20.24 29.55 -169.99 -5.02 15.21 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.71 6.17 -51.93 -0.32 0.39 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.28 6.21 -51.93 -0.32 0.96 16 32 H 0.05 0.79 6.56 -51.93 -0.34 0.45 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.67 7.45 -51.93 -0.39 0.28 16 36 H 0.05 0.62 6.32 -51.93 -0.33 0.29 16 37 H 0.35 7.36 6.11 -39.29 -0.24 7.12 16 38 H 0.06 1.09 7.30 -51.93 -0.38 0.71 16 39 H 0.04 0.88 7.77 -51.93 -0.40 0.48 16 40 H 0.11 1.77 8.04 -52.49 -0.42 1.35 16 41 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 348.40 15.07 5.25 5.25 Total: -1.00 -27.70 348.40 -8.32 -36.02 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -6.98 Total: 12.18 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: -1.65 Total: -27.37 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.08 Total: -36.56 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: 0.00 Total: -4.73 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.70 -8.32 -36.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042553708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.742 kcal (2) G-P(sol) polarization free energy of solvation -27.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds