Wall clock time and date at job start Mon Mar 30 2020 07:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46788 * 2 1 4 4 C 1.52995 * 109.47029 * 119.99724 * 2 1 3 5 5 C 1.53004 * 109.47088 * 175.00178 * 4 2 1 6 6 O 1.42900 * 109.46879 * 179.97438 * 5 4 2 7 7 C 1.42908 * 113.99456 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46728 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47722 * 64.99805 * 8 7 6 10 10 C 1.38856 * 120.00469 * 179.97438 * 9 8 7 11 11 C 1.39564 * 119.83805 * 359.72843 * 10 9 8 12 12 C 1.36344 * 120.15889 * 179.72127 * 11 10 9 13 13 C 1.40890 * 119.83562 * 0.54827 * 12 11 10 14 14 C 1.41130 * 120.15796 * 179.70390 * 13 12 11 15 15 H 1.08002 * 119.99890 * 204.63732 * 14 13 12 16 16 C 1.39868 * 120.00093 * 24.62666 * 14 13 12 17 17 N 1.30900 * 119.99549 * 17.96371 * 16 14 13 18 18 Si 1.86800 * 120.00249 * 197.95588 * 16 14 13 19 19 H 1.48506 * 109.46918 * 60.00132 * 18 16 14 20 20 H 1.48494 * 109.47059 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47045 * 300.00576 * 18 16 14 22 22 C 1.40890 * 119.68649 * 359.72642 * 13 12 11 23 23 C 1.36339 * 119.83897 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.47388 * 299.99738 * 1 2 3 25 25 H 1.08997 * 109.47216 * 60.00116 * 1 2 3 26 26 H 1.08999 * 109.46563 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47207 * 239.99801 * 2 1 3 28 28 H 1.08997 * 109.47148 * 299.99926 * 3 2 1 29 29 H 1.08998 * 109.46942 * 59.99989 * 3 2 1 30 30 H 1.09001 * 109.46818 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47661 * 55.00166 * 4 2 1 32 32 H 1.09007 * 109.47734 * 295.00181 * 4 2 1 33 33 H 1.09002 * 109.47068 * 60.00271 * 5 4 2 34 34 H 1.08998 * 109.47192 * 300.00100 * 5 4 2 35 35 H 1.09001 * 109.47293 * 60.00502 * 7 6 5 36 36 H 1.08996 * 109.47240 * 299.99942 * 7 6 5 37 37 H 1.09003 * 109.47176 * 304.99788 * 8 7 6 38 38 H 1.09004 * 109.47110 * 184.99956 * 8 7 6 39 39 H 0.97004 * 119.99357 * 0.02562 * 9 8 7 40 40 H 1.08002 * 119.92350 * 359.97438 * 11 10 9 41 41 H 1.07998 * 120.08326 * 180.27560 * 12 11 10 42 42 H 0.97000 * 119.99705 * 180.02562 * 17 16 14 43 43 H 1.08004 * 120.07951 * 179.97438 * 22 13 12 44 44 H 1.07997 * 119.91946 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1880 6 8 4.0412 -1.5040 2.3551 7 6 5.4612 -1.6592 2.3977 8 6 5.8561 -2.3891 3.6830 9 7 5.3180 -3.7514 3.6562 10 6 5.5488 -4.6103 4.7225 11 6 6.2987 -4.1741 5.8158 12 6 6.5246 -5.0101 6.8689 13 6 6.0086 -6.3209 6.8465 14 6 6.2435 -7.1940 7.9301 15 1 6.2176 -8.2629 7.7778 16 6 6.5101 -6.6750 9.2013 17 7 6.2041 -5.4328 9.4783 18 14 7.3024 -7.7546 10.5036 19 1 8.6275 -8.2204 10.0213 20 1 7.4770 -6.9737 11.7546 21 1 6.4322 -8.9280 10.7704 22 6 5.2573 -6.7561 5.7369 23 6 5.0342 -5.9073 4.6936 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6055 -1.7198 1.2953 32 1 1.7517 -0.1582 2.1371 33 1 3.9995 0.1676 1.1421 34 1 3.8533 -1.3939 0.3003 35 1 5.9348 -0.6776 2.3767 36 1 5.7893 -2.2394 1.5353 37 1 5.4512 -1.8554 4.5429 38 1 6.9428 -2.4291 3.7589 39 1 4.8010 -4.0536 2.8930 40 1 6.6977 -3.1705 5.8295 41 1 7.1013 -4.6698 7.7162 42 1 6.3893 -5.0727 10.3598 43 1 4.8591 -7.7598 5.7129 44 1 4.4588 -6.2397 3.8422 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:34 Heat of formation + Delta-G solvation = -48.611006 kcal Electronic energy + Delta-G solvation = -20481.079644 eV Core-core repulsion = 17397.186465 eV Total energy + Delta-G solvation = -3083.893179 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.59665 -37.77445 -36.50352 -34.84820 -32.97212 -30.46874 -29.39656 -29.02711 -27.53156 -27.36436 -24.18210 -23.28485 -22.56285 -20.80187 -20.23359 -19.78145 -17.14529 -16.78974 -16.54506 -15.94074 -15.47939 -14.92180 -14.59851 -14.41080 -14.23724 -13.80020 -13.25687 -13.14186 -12.95285 -12.59703 -12.48584 -12.39570 -12.02898 -11.80909 -11.68316 -11.60734 -11.21680 -11.16509 -10.97529 -10.93934 -10.89914 -10.81285 -10.71071 -10.40482 -9.66971 -9.63332 -9.22208 -9.16192 -8.46154 -7.42837 -6.58259 -6.31218 -3.97080 2.98020 3.16001 3.17742 3.20863 3.41404 3.54788 4.09664 4.39368 4.55636 4.59221 4.69585 4.82510 4.96725 5.06913 5.21321 5.26211 5.28734 5.33862 5.36720 5.41179 5.51927 5.58891 5.69347 5.73776 5.86718 5.89565 5.98732 6.04407 6.08809 6.15129 6.34557 6.38911 6.99135 7.00352 7.17171 7.26345 7.42113 7.62156 7.75530 7.91321 8.20934 8.36075 8.56492 8.78449 8.87641 9.11810 9.21865 10.43234 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036950 B = 0.002519 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.592702 B =11110.800031 C =11212.438966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.115 4.115 5 C 0.060 3.940 6 O -0.380 6.380 7 C 0.054 3.946 8 C 0.141 3.859 9 N -0.757 5.757 10 C 0.095 3.905 11 C -0.166 4.166 12 C -0.124 4.124 13 C 0.073 3.927 14 C -0.468 4.468 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.809 5.809 18 Si 0.903 3.097 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.268 1.268 22 C -0.186 4.186 23 C -0.160 4.160 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.386 0.614 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.276 0.724 43 H 0.091 0.909 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.857 11.933 -15.805 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.209 4.209 4 C -0.152 4.152 5 C -0.017 4.017 6 O -0.300 6.300 7 C -0.023 4.023 8 C 0.015 3.985 9 N -0.393 5.393 10 C -0.002 4.002 11 C -0.188 4.188 12 C -0.144 4.144 13 C 0.070 3.930 14 C -0.499 4.499 15 H 0.090 0.910 16 C -0.141 4.141 17 N -0.436 5.436 18 Si 0.728 3.272 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.206 4.206 23 C -0.182 4.182 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.219 0.781 40 H 0.105 0.895 41 H 0.136 0.864 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.877 12.193 -15.368 20.215 hybrid contribution 0.299 -0.380 0.198 0.523 sum -4.578 11.813 -15.170 19.765 Atomic orbital electron populations 1.21826 0.94817 1.01978 1.01807 1.21056 0.96067 0.96269 0.97929 1.21928 1.01098 0.95973 1.01854 1.21578 0.93695 1.01649 0.98307 1.22550 0.95202 0.95824 0.88095 1.87992 1.21438 1.78623 1.41913 1.22771 0.81683 0.99135 0.98685 1.21027 0.97534 0.84280 0.95619 1.43764 1.63128 1.10999 1.21396 1.17367 1.02959 0.90282 0.89590 1.20089 1.04665 0.98839 0.95207 1.20927 1.01530 0.94832 0.97099 1.17487 0.90765 0.92689 0.92096 1.19319 1.43808 0.94244 0.92518 0.91034 1.25792 0.93624 0.95210 0.99457 1.69854 1.36442 1.15145 1.22159 0.86469 0.80631 0.80652 0.79438 1.19129 1.20634 1.19307 1.20544 1.04567 0.98722 0.96785 1.19800 1.05608 0.93329 0.99462 0.92512 0.92675 0.92499 0.91178 0.92742 0.92476 0.92562 0.90983 0.91032 0.93449 0.93736 0.92614 0.93110 0.92648 0.92112 0.78131 0.89465 0.86413 0.91328 0.89092 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.19 37.16 0.34 -0.67 16 2 C -0.09 -0.70 2.92 -90.62 -0.26 -0.97 16 3 C -0.15 -1.02 8.95 37.16 0.33 -0.69 16 4 C -0.11 -1.08 5.05 -26.73 -0.14 -1.22 16 5 C 0.06 0.61 5.69 37.16 0.21 0.82 16 6 O -0.38 -5.16 10.29 -35.23 -0.36 -5.53 16 7 C 0.05 0.66 6.07 37.16 0.23 0.89 16 8 C 0.14 2.19 5.28 -4.04 -0.02 2.17 16 9 N -0.76 -14.02 5.65 -58.50 -0.33 -14.35 16 10 C 0.10 2.17 6.67 -83.69 -0.56 1.61 16 11 C -0.17 -4.02 9.23 -39.77 -0.37 -4.39 16 12 C -0.12 -3.34 8.64 -39.26 -0.34 -3.68 16 13 C 0.07 2.02 5.57 -106.79 -0.60 1.42 16 14 C -0.47 -12.99 9.03 -37.88 -0.34 -13.34 16 15 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 16 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 17 N -0.81 -21.96 10.96 55.54 0.61 -21.35 16 18 Si 0.90 19.60 29.60 -169.99 -5.03 14.57 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 C -0.19 -4.76 9.74 -39.26 -0.38 -5.14 16 23 C -0.16 -3.74 9.82 -39.77 -0.39 -4.13 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.43 6.56 -51.93 -0.34 0.09 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 38 H 0.06 0.91 7.91 -51.93 -0.41 0.50 16 39 H 0.39 6.62 8.47 -40.82 -0.35 6.28 16 40 H 0.09 1.92 6.68 -52.49 -0.35 1.57 16 41 H 0.12 3.27 6.16 -52.49 -0.32 2.95 16 42 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 43 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 44 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 356.97 15.07 5.38 5.38 Total: -1.00 -29.48 356.97 -9.68 -39.15 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -7.57 Total: 7.58 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -2.37 Total: -25.46 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.28 Total: -35.71 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.36 Total: -5.53 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.48 -9.68 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.457 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds