Wall clock time and date at job start Mon Mar 30 2020 07:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46788 * 2 1 4 4 C 1.52995 * 109.47029 * 119.99724 * 2 1 3 5 5 C 1.53004 * 109.47088 * 175.00178 * 4 2 1 6 6 O 1.42900 * 109.46879 * 179.97438 * 5 4 2 7 7 C 1.42908 * 113.99456 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46728 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47722 * 64.99805 * 8 7 6 10 10 C 1.38856 * 120.00469 * 179.97438 * 9 8 7 11 11 C 1.39564 * 119.83805 * 359.72843 * 10 9 8 12 12 C 1.36344 * 120.15889 * 179.72127 * 11 10 9 13 13 C 1.40890 * 119.83562 * 0.54827 * 12 11 10 14 14 C 1.41130 * 120.15796 * 179.70390 * 13 12 11 15 15 H 1.08002 * 119.99890 * 204.63732 * 14 13 12 16 16 C 1.39868 * 120.00093 * 24.62666 * 14 13 12 17 17 N 1.30900 * 119.99549 * 17.96371 * 16 14 13 18 18 Si 1.86800 * 120.00249 * 197.95588 * 16 14 13 19 19 H 1.48506 * 109.46918 * 60.00132 * 18 16 14 20 20 H 1.48494 * 109.47059 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47045 * 300.00576 * 18 16 14 22 22 C 1.40890 * 119.68649 * 359.72642 * 13 12 11 23 23 C 1.36339 * 119.83897 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.47388 * 299.99738 * 1 2 3 25 25 H 1.08997 * 109.47216 * 60.00116 * 1 2 3 26 26 H 1.08999 * 109.46563 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47207 * 239.99801 * 2 1 3 28 28 H 1.08997 * 109.47148 * 299.99926 * 3 2 1 29 29 H 1.08998 * 109.46942 * 59.99989 * 3 2 1 30 30 H 1.09001 * 109.46818 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47661 * 55.00166 * 4 2 1 32 32 H 1.09007 * 109.47734 * 295.00181 * 4 2 1 33 33 H 1.09002 * 109.47068 * 60.00271 * 5 4 2 34 34 H 1.08998 * 109.47192 * 300.00100 * 5 4 2 35 35 H 1.09001 * 109.47293 * 60.00502 * 7 6 5 36 36 H 1.08996 * 109.47240 * 299.99942 * 7 6 5 37 37 H 1.09003 * 109.47176 * 304.99788 * 8 7 6 38 38 H 1.09004 * 109.47110 * 184.99956 * 8 7 6 39 39 H 0.97004 * 119.99357 * 0.02562 * 9 8 7 40 40 H 1.08002 * 119.92350 * 359.97438 * 11 10 9 41 41 H 1.07998 * 120.08326 * 180.27560 * 12 11 10 42 42 H 0.97000 * 119.99705 * 180.02562 * 17 16 14 43 43 H 1.08004 * 120.07951 * 179.97438 * 22 13 12 44 44 H 1.07997 * 119.91946 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1880 6 8 4.0412 -1.5040 2.3551 7 6 5.4612 -1.6592 2.3977 8 6 5.8561 -2.3891 3.6830 9 7 5.3180 -3.7514 3.6562 10 6 5.5488 -4.6103 4.7225 11 6 6.2987 -4.1741 5.8158 12 6 6.5246 -5.0101 6.8689 13 6 6.0086 -6.3209 6.8465 14 6 6.2435 -7.1940 7.9301 15 1 6.2176 -8.2629 7.7778 16 6 6.5101 -6.6750 9.2013 17 7 6.2041 -5.4328 9.4783 18 14 7.3024 -7.7546 10.5036 19 1 8.6275 -8.2204 10.0213 20 1 7.4770 -6.9737 11.7546 21 1 6.4322 -8.9280 10.7704 22 6 5.2573 -6.7561 5.7369 23 6 5.0342 -5.9073 4.6936 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6055 -1.7198 1.2953 32 1 1.7517 -0.1582 2.1371 33 1 3.9995 0.1676 1.1421 34 1 3.8533 -1.3939 0.3003 35 1 5.9348 -0.6776 2.3767 36 1 5.7893 -2.2394 1.5353 37 1 5.4512 -1.8554 4.5429 38 1 6.9428 -2.4291 3.7589 39 1 4.8010 -4.0536 2.8930 40 1 6.6977 -3.1705 5.8295 41 1 7.1013 -4.6698 7.7162 42 1 6.3893 -5.0727 10.3598 43 1 4.8591 -7.7598 5.7129 44 1 4.4588 -6.2397 3.8422 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:33 Heat of formation + Delta-G solvation = -64.371773 kcal Electronic energy + Delta-G solvation = -20481.763082 eV Core-core repulsion = 17397.186465 eV Total energy + Delta-G solvation = -3084.576617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89733 -39.20532 -37.35841 -36.41294 -34.76915 -31.77938 -31.33722 -30.24945 -28.88271 -28.02367 -26.01323 -24.11018 -23.88892 -22.62989 -21.61307 -20.82355 -19.14050 -17.97228 -17.70649 -17.17400 -16.73056 -16.50405 -15.79108 -15.51685 -15.39780 -14.97998 -14.54083 -14.50097 -14.29916 -13.99490 -13.78116 -13.59715 -13.47173 -13.07788 -12.94961 -12.72389 -12.63396 -12.51419 -12.33644 -12.23717 -12.08110 -11.67003 -11.57592 -11.53225 -11.50185 -11.17209 -11.05188 -10.51616 -10.28975 -9.39965 -8.53689 -8.14820 -5.99349 1.12255 1.19571 1.40535 1.51829 1.61095 2.28329 2.66129 2.85519 2.95403 3.85956 3.90869 3.92160 4.03845 4.15520 4.24212 4.32434 4.44188 4.47063 4.49613 4.52677 4.57283 4.72028 4.79979 4.82849 4.89284 4.94767 5.02036 5.04644 5.09858 5.11639 5.15911 5.28833 5.30549 5.44241 5.46716 5.49109 5.69601 5.80889 5.97284 6.19545 6.29654 6.40432 6.68250 6.88285 7.09335 7.16037 7.32764 8.49654 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036950 B = 0.002519 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.592702 B =11110.800031 C =11212.438966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.113 4.113 5 C 0.058 3.942 6 O -0.410 6.410 7 C 0.061 3.939 8 C 0.134 3.866 9 N -0.748 5.748 10 C 0.112 3.888 11 C -0.176 4.176 12 C -0.143 4.143 13 C 0.033 3.967 14 C -0.506 4.506 15 H 0.068 0.932 16 C 0.030 3.970 17 N -0.843 5.843 18 Si 0.978 3.022 19 H -0.262 1.262 20 H -0.270 1.270 21 H -0.262 1.262 22 C -0.195 4.195 23 C -0.167 4.167 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.396 0.604 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.282 0.718 43 H 0.097 0.903 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.762 12.758 -17.442 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.151 4.151 5 C -0.018 4.018 6 O -0.330 6.330 7 C -0.015 4.015 8 C 0.010 3.990 9 N -0.383 5.383 10 C 0.012 3.988 11 C -0.198 4.198 12 C -0.163 4.163 13 C 0.030 3.970 14 C -0.537 4.537 15 H 0.086 0.914 16 C -0.182 4.182 17 N -0.471 5.471 18 Si 0.800 3.200 19 H -0.187 1.187 20 H -0.195 1.195 21 H -0.186 1.186 22 C -0.216 4.216 23 C -0.190 4.190 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.230 0.770 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.797 13.046 -17.053 22.001 hybrid contribution 0.191 -0.526 0.534 0.773 sum -4.606 12.521 -16.520 21.234 Atomic orbital electron populations 1.21835 0.94565 1.01909 1.02185 1.21038 0.96278 0.96558 0.97054 1.21923 1.01261 0.95424 1.02158 1.21580 0.93583 1.01032 0.98903 1.22709 0.95322 0.96446 0.87360 1.87949 1.22077 1.79333 1.43622 1.22715 0.81525 1.00216 0.97051 1.21224 0.97946 0.82656 0.97213 1.43852 1.62561 1.11641 1.20256 1.17491 1.00775 0.90612 0.89891 1.20254 1.05130 0.99388 0.95076 1.20873 1.02439 0.95375 0.97656 1.17833 0.92360 0.93485 0.93318 1.19558 1.46173 0.94225 0.93752 0.91357 1.26647 0.93514 0.96683 1.01339 1.69922 1.37264 1.16834 1.23066 0.85322 0.79452 0.78702 0.76551 1.18693 1.19476 1.18641 1.20760 1.04305 0.99524 0.96963 1.20096 1.05699 0.93360 0.99805 0.92903 0.91545 0.92820 0.90479 0.91715 0.92936 0.92283 0.92208 0.92215 0.92051 0.92566 0.89999 0.91613 0.94158 0.91146 0.77017 0.87619 0.88213 0.90761 0.88463 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.19 71.98 0.66 -1.17 16 2 C -0.09 -1.18 2.92 -10.79 -0.03 -1.22 16 3 C -0.15 -1.72 8.95 71.98 0.64 -1.08 16 4 C -0.11 -1.99 5.05 30.59 0.15 -1.84 16 5 C 0.06 1.03 5.69 71.98 0.41 1.44 16 6 O -0.41 -10.21 10.29 -148.98 -1.53 -11.74 16 7 C 0.06 1.31 6.07 71.98 0.44 1.75 16 8 C 0.13 3.88 5.28 86.38 0.46 4.34 16 9 N -0.75 -26.13 5.65 -338.99 -1.91 -28.05 16 10 C 0.11 4.97 6.67 38.67 0.26 5.23 16 11 C -0.18 -8.56 9.23 22.15 0.20 -8.35 16 12 C -0.14 -7.97 8.64 22.48 0.19 -7.77 16 13 C 0.03 1.89 5.57 -21.27 -0.12 1.77 16 14 C -0.51 -29.07 9.03 23.38 0.21 -28.86 16 15 H 0.07 3.79 7.91 -2.91 -0.02 3.77 16 16 C 0.03 1.61 5.13 85.23 0.44 2.05 16 17 N -0.84 -47.09 10.96 21.82 0.24 -46.85 16 18 Si 0.98 40.84 29.60 68.60 2.03 42.87 16 19 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 22 C -0.20 -10.13 9.74 22.48 0.22 -9.91 16 23 C -0.17 -7.67 9.82 22.15 0.22 -7.46 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.64 6.56 -2.39 -0.02 0.62 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.06 0.93 6.56 -2.39 -0.02 0.91 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.04 1.31 7.94 -2.39 -0.02 1.29 16 38 H 0.07 1.93 7.91 -2.38 -0.02 1.92 16 39 H 0.40 12.51 8.47 -92.71 -0.79 11.73 16 40 H 0.11 4.61 6.68 -2.91 -0.02 4.59 16 41 H 0.10 5.80 6.16 -2.91 -0.02 5.79 16 42 H 0.28 14.36 8.30 -92.71 -0.77 13.59 16 43 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 44 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -64.73 356.97 3.35 -61.38 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.18 Total: 33.46 kcal Atomic # 6 Polarization: -55.43 SS G_CDS: 4.35 Total: -51.07 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -1.67 Total: -74.90 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -1.53 Total: -11.74 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -64.73 3.35 -61.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.993 kcal (2) G-P(sol) polarization free energy of solvation -64.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds