Wall clock time and date at job start Mon Mar 30 2020 07:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47002 * 2 1 4 4 N 1.46902 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.46901 * 110.99512 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47703 * 324.99913 * 5 4 3 7 7 C 1.53000 * 109.47058 * 85.00694 * 5 4 3 8 8 C 1.53002 * 109.47005 * 205.00333 * 5 4 3 9 9 C 1.53000 * 109.47337 * 64.99838 * 8 5 4 10 10 O 1.42899 * 109.46969 * 180.02562 * 9 8 5 11 11 C 1.35680 * 116.99576 * 180.02562 * 10 9 8 12 12 C 1.39308 * 119.81797 * 359.72184 * 11 10 9 13 13 C 1.36441 * 120.18212 * 179.76207 * 12 11 10 14 14 C 1.40836 * 119.81161 * 0.51166 * 13 12 11 15 15 C 1.41215 * 120.17594 * 179.71800 * 14 13 12 16 16 H 1.08005 * 119.99404 * 204.56740 * 15 14 13 17 17 C 1.39890 * 120.00231 * 24.57247 * 15 14 13 18 18 N 1.30878 * 119.99733 * 17.91879 * 17 15 14 19 19 Si 1.86799 * 119.99884 * 197.91961 * 17 15 14 20 20 H 1.48492 * 109.46992 * 60.00134 * 19 17 15 21 21 H 1.48508 * 109.47006 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47039 * 299.99736 * 19 17 15 23 23 C 1.40826 * 119.64054 * 359.74505 * 14 13 12 24 24 C 1.36444 * 119.81459 * 359.97438 * 23 14 13 25 25 H 1.08998 * 109.46588 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46707 * 299.99789 * 1 2 3 27 27 H 1.08989 * 109.47068 * 59.99820 * 1 2 3 28 28 H 1.09000 * 109.47186 * 240.00159 * 2 1 3 29 29 H 1.09000 * 109.47437 * 119.99878 * 2 1 3 30 30 H 1.09000 * 109.47020 * 60.00057 * 3 2 1 31 31 H 1.09000 * 109.46925 * 300.00191 * 3 2 1 32 32 H 1.00890 * 111.00054 * 303.95461 * 4 3 2 33 33 H 1.09003 * 109.46993 * 180.02562 * 7 5 4 34 34 H 1.09001 * 109.46708 * 299.99359 * 7 5 4 35 35 H 1.08997 * 109.47501 * 59.99096 * 7 5 4 36 36 H 1.08996 * 109.47188 * 185.00355 * 8 5 4 37 37 H 1.09010 * 109.46942 * 304.99803 * 8 5 4 38 38 H 1.08996 * 109.47403 * 300.00385 * 9 8 5 39 39 H 1.08999 * 109.46764 * 60.00454 * 9 8 5 40 40 H 1.07996 * 119.90534 * 0.02772 * 12 11 10 41 41 H 1.07997 * 120.09093 * 180.25705 * 13 12 11 42 42 H 0.97006 * 119.99765 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.09282 * 179.97438 * 23 14 13 44 44 H 1.07998 * 119.90854 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0354 2.8140 0.0000 6 1 3.3800 3.4545 -0.5901 7 6 4.1003 3.3360 1.4368 8 6 5.4389 2.8213 -0.6091 9 6 5.3575 2.4184 -2.0828 10 8 6.6684 2.4247 -2.6515 11 6 6.7730 2.0883 -3.9618 12 6 5.6301 1.7523 -4.6841 13 6 5.7261 1.4176 -6.0033 14 6 6.9864 1.4020 -6.6318 15 6 7.0953 1.0509 -7.9952 16 1 8.0244 0.6555 -8.3784 17 6 5.9998 1.2154 -8.8496 18 7 5.0106 1.9986 -8.5018 19 14 5.9491 0.3172 -10.4867 20 1 6.0022 -1.1477 -10.2494 21 1 4.6913 0.6575 -11.1991 22 1 7.1129 0.7275 -11.3126 23 6 8.1373 1.7377 -5.8930 24 6 8.0233 2.0757 -4.5760 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.8703 0.9166 0.7821 33 1 4.4904 4.3538 1.4363 34 1 3.1004 3.3308 1.8707 35 1 4.7557 2.6954 2.0268 36 1 5.8646 3.8215 -0.5289 37 1 6.0713 2.1133 -0.0732 38 1 4.9318 1.4182 -2.1631 39 1 4.7252 3.1264 -2.6186 40 1 4.6650 1.7610 -4.1995 41 1 4.8386 1.1614 -6.5629 42 1 4.2508 2.1123 -9.0941 43 1 9.1074 1.7277 -6.3675 44 1 8.9050 2.3330 -4.0078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403451663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:40 Heat of formation + Delta-G solvation = -44.497755 kcal Electronic energy + Delta-G solvation = -20906.974191 eV Core-core repulsion = 17823.259376 eV Total energy + Delta-G solvation = -3083.714815 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.80315 -37.85313 -36.25242 -34.43088 -33.25776 -30.91140 -29.56867 -29.33348 -28.44644 -25.30498 -24.71748 -23.23221 -21.63866 -21.13011 -20.44279 -20.02946 -17.26706 -16.75073 -16.11489 -15.81520 -15.27084 -14.98794 -14.66018 -14.36029 -13.87250 -13.72283 -13.48870 -12.96057 -12.79719 -12.64660 -12.41692 -12.26368 -12.22060 -11.82885 -11.72838 -11.56894 -11.32869 -11.10386 -11.02929 -10.94293 -10.90534 -10.77296 -10.63141 -10.38720 -9.74606 -9.69536 -9.26859 -8.92053 -8.51063 -7.55672 -6.91472 -6.65320 -4.17351 2.85802 3.05324 3.11413 3.14518 3.29395 3.96717 4.00336 4.14322 4.69529 4.75470 4.82950 4.93566 4.98012 5.11516 5.24014 5.30368 5.40177 5.48111 5.56765 5.60424 5.66708 5.75383 5.77011 5.82820 5.90079 5.97559 6.02139 6.09582 6.24810 6.28357 6.35789 6.39603 6.85245 6.92253 6.99284 7.14515 7.26342 7.36850 7.51465 7.64989 8.01781 8.08164 8.24738 8.55563 8.75312 8.97763 9.08919 10.29232 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.003501 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.549152 B = 7994.792099 C = 9269.868587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.058 3.942 4 N -0.684 5.684 5 C 0.086 3.914 6 H 0.079 0.921 7 C -0.180 4.180 8 C -0.104 4.104 9 C 0.076 3.924 10 O -0.336 6.336 11 C -0.002 4.002 12 C -0.173 4.173 13 C -0.133 4.133 14 C 0.086 3.914 15 C -0.465 4.465 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.802 5.802 19 Si 0.906 3.094 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.267 1.267 23 C -0.197 4.197 24 C -0.117 4.117 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.340 0.660 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.095 0.905 41 H 0.120 0.880 42 H 0.279 0.721 43 H 0.098 0.902 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.389 -0.267 15.682 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.071 4.071 4 N -0.315 5.315 5 C -0.024 4.024 6 H 0.097 0.903 7 C -0.238 4.238 8 C -0.142 4.142 9 C 0.000 4.000 10 O -0.252 6.252 11 C -0.045 4.045 12 C -0.192 4.192 13 C -0.153 4.153 14 C 0.084 3.916 15 C -0.496 4.496 16 H 0.094 0.906 17 C -0.141 4.141 18 N -0.428 5.428 19 Si 0.731 3.269 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.216 4.216 24 C -0.136 4.136 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.158 0.842 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.113 0.887 41 H 0.138 0.862 42 H 0.089 0.911 43 H 0.117 0.883 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.418 -0.184 15.021 16.754 hybrid contribution -0.592 -0.033 0.052 0.596 sum -8.010 -0.217 15.073 17.071 Atomic orbital electron populations 1.21726 0.95666 1.01761 1.01721 1.21515 0.95514 0.96467 1.02720 1.22031 0.87679 0.97001 1.00363 1.60558 1.07262 1.13575 1.50078 1.21508 0.96337 0.89474 0.95086 0.90269 1.22465 1.01610 1.02275 0.97498 1.21479 0.95679 1.02038 0.94983 1.22342 0.84362 1.01118 0.92211 1.85751 1.29217 1.86391 1.23822 1.18573 0.94353 1.09212 0.82388 1.20642 0.95587 1.06746 0.96230 1.20942 0.98804 1.03242 0.92284 1.17576 0.90896 0.90013 0.93150 1.19420 0.98337 1.38433 0.93363 0.90627 1.25854 0.94827 0.93293 1.00137 1.69841 1.07736 1.27874 1.37367 0.86404 0.78253 0.80914 0.81311 1.18945 1.20480 1.19124 1.20583 0.98117 1.09200 0.93747 1.19613 0.93676 1.05378 0.94960 0.92561 0.93063 0.92511 0.90813 0.92320 0.95554 0.90968 0.84155 0.91773 0.92838 0.92282 0.91205 0.91218 0.91818 0.93994 0.88658 0.86209 0.91051 0.88341 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.10 6.19 -26.73 -0.17 -1.26 16 3 C 0.06 0.55 5.48 -3.82 -0.02 0.53 16 4 N -0.68 -7.20 5.70 -106.72 -0.61 -7.81 16 5 C 0.09 0.91 2.59 -67.71 -0.18 0.73 16 6 H 0.08 0.87 7.80 -51.93 -0.40 0.47 16 7 C -0.18 -1.51 9.16 37.16 0.34 -1.17 16 8 C -0.10 -1.36 5.26 -26.73 -0.14 -1.50 16 9 C 0.08 1.31 4.62 37.16 0.17 1.48 16 10 O -0.34 -7.22 10.12 -18.74 -0.19 -7.41 16 11 C 0.00 -0.05 6.71 -38.78 -0.26 -0.31 16 12 C -0.17 -4.27 8.96 -39.83 -0.36 -4.62 16 13 C -0.13 -3.58 8.64 -39.25 -0.34 -3.92 16 14 C 0.09 2.36 5.57 -106.81 -0.60 1.77 16 15 C -0.47 -12.67 9.04 -37.83 -0.34 -13.01 16 16 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 17 C 0.08 1.94 5.13 -17.34 -0.09 1.85 16 18 N -0.80 -21.24 10.96 55.54 0.61 -20.63 16 19 Si 0.91 19.10 29.60 -169.99 -5.03 14.07 16 20 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 23 C -0.20 -5.02 9.74 -39.25 -0.38 -5.40 16 24 C -0.12 -2.85 9.92 -39.83 -0.40 -3.24 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.45 8.14 -51.94 -0.42 0.03 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.03 0.23 7.44 -51.93 -0.39 -0.16 16 31 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 32 H 0.34 3.18 8.47 -39.30 -0.33 2.85 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.42 7.45 -51.93 -0.39 0.03 16 35 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.06 1.15 7.25 -51.93 -0.38 0.77 16 39 H 0.04 0.74 7.66 -51.93 -0.40 0.34 16 40 H 0.10 2.14 6.27 -52.49 -0.33 1.81 16 41 H 0.12 3.30 6.16 -52.49 -0.32 2.97 16 42 H 0.28 6.74 8.30 -40.82 -0.34 6.41 16 43 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 44 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 356.78 15.07 5.38 5.38 Total: -1.00 -28.75 356.78 -9.78 -38.53 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.55 Total: 6.76 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: -2.38 Total: -28.89 kcal Atomic # 7 Polarization: -28.45 SS G_CDS: 0.00 Total: -28.45 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.19 Total: -7.41 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.75 -9.78 -38.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403451663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.966 kcal (2) G-P(sol) polarization free energy of solvation -28.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds