Wall clock time and date at job start Mon Mar 30 2020 07:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47002 * 2 1 4 4 N 1.46902 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.46901 * 110.99512 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47703 * 324.99913 * 5 4 3 7 7 C 1.53000 * 109.47058 * 85.00694 * 5 4 3 8 8 C 1.53002 * 109.47005 * 205.00333 * 5 4 3 9 9 C 1.53000 * 109.47337 * 64.99838 * 8 5 4 10 10 O 1.42899 * 109.46969 * 180.02562 * 9 8 5 11 11 C 1.35680 * 116.99576 * 180.02562 * 10 9 8 12 12 C 1.39308 * 119.81797 * 359.72184 * 11 10 9 13 13 C 1.36441 * 120.18212 * 179.76207 * 12 11 10 14 14 C 1.40836 * 119.81161 * 0.51166 * 13 12 11 15 15 C 1.41215 * 120.17594 * 179.71800 * 14 13 12 16 16 H 1.08005 * 119.99404 * 204.56740 * 15 14 13 17 17 C 1.39890 * 120.00231 * 24.57247 * 15 14 13 18 18 N 1.30878 * 119.99733 * 17.91879 * 17 15 14 19 19 Si 1.86799 * 119.99884 * 197.91961 * 17 15 14 20 20 H 1.48492 * 109.46992 * 60.00134 * 19 17 15 21 21 H 1.48508 * 109.47006 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47039 * 299.99736 * 19 17 15 23 23 C 1.40826 * 119.64054 * 359.74505 * 14 13 12 24 24 C 1.36444 * 119.81459 * 359.97438 * 23 14 13 25 25 H 1.08998 * 109.46588 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46707 * 299.99789 * 1 2 3 27 27 H 1.08989 * 109.47068 * 59.99820 * 1 2 3 28 28 H 1.09000 * 109.47186 * 240.00159 * 2 1 3 29 29 H 1.09000 * 109.47437 * 119.99878 * 2 1 3 30 30 H 1.09000 * 109.47020 * 60.00057 * 3 2 1 31 31 H 1.09000 * 109.46925 * 300.00191 * 3 2 1 32 32 H 1.00890 * 111.00054 * 303.95461 * 4 3 2 33 33 H 1.09003 * 109.46993 * 180.02562 * 7 5 4 34 34 H 1.09001 * 109.46708 * 299.99359 * 7 5 4 35 35 H 1.08997 * 109.47501 * 59.99096 * 7 5 4 36 36 H 1.08996 * 109.47188 * 185.00355 * 8 5 4 37 37 H 1.09010 * 109.46942 * 304.99803 * 8 5 4 38 38 H 1.08996 * 109.47403 * 300.00385 * 9 8 5 39 39 H 1.08999 * 109.46764 * 60.00454 * 9 8 5 40 40 H 1.07996 * 119.90534 * 0.02772 * 12 11 10 41 41 H 1.07997 * 120.09093 * 180.25705 * 13 12 11 42 42 H 0.97006 * 119.99765 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.09282 * 179.97438 * 23 14 13 44 44 H 1.07998 * 119.90854 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0354 2.8140 0.0000 6 1 3.3800 3.4545 -0.5901 7 6 4.1003 3.3360 1.4368 8 6 5.4389 2.8213 -0.6091 9 6 5.3575 2.4184 -2.0828 10 8 6.6684 2.4247 -2.6515 11 6 6.7730 2.0883 -3.9618 12 6 5.6301 1.7523 -4.6841 13 6 5.7261 1.4176 -6.0033 14 6 6.9864 1.4020 -6.6318 15 6 7.0953 1.0509 -7.9952 16 1 8.0244 0.6555 -8.3784 17 6 5.9998 1.2154 -8.8496 18 7 5.0106 1.9986 -8.5018 19 14 5.9491 0.3172 -10.4867 20 1 6.0022 -1.1477 -10.2494 21 1 4.6913 0.6575 -11.1991 22 1 7.1129 0.7275 -11.3126 23 6 8.1373 1.7377 -5.8930 24 6 8.0233 2.0757 -4.5760 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.8703 0.9166 0.7821 33 1 4.4904 4.3538 1.4363 34 1 3.1004 3.3308 1.8707 35 1 4.7557 2.6954 2.0268 36 1 5.8646 3.8215 -0.5289 37 1 6.0713 2.1133 -0.0732 38 1 4.9318 1.4182 -2.1631 39 1 4.7252 3.1264 -2.6186 40 1 4.6650 1.7610 -4.1995 41 1 4.8386 1.1614 -6.5629 42 1 4.2508 2.1123 -9.0941 43 1 9.1074 1.7277 -6.3675 44 1 8.9050 2.3330 -4.0078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403451663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:38 Heat of formation + Delta-G solvation = -59.661748 kcal Electronic energy + Delta-G solvation = -20907.631751 eV Core-core repulsion = 17823.259376 eV Total energy + Delta-G solvation = -3084.372375 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.51837 -38.91075 -37.97359 -35.42838 -35.02410 -32.03582 -31.51247 -30.87835 -29.68475 -26.73519 -25.94880 -24.59592 -22.94416 -22.37799 -22.01605 -21.32447 -19.25127 -18.52616 -17.15861 -17.10906 -16.70861 -16.17030 -15.94545 -15.74386 -15.60994 -14.80305 -14.55943 -14.36068 -14.15342 -13.90826 -13.80084 -13.58024 -13.50402 -13.09339 -12.95316 -12.88493 -12.72039 -12.54791 -12.36769 -12.18321 -12.04556 -11.91749 -11.71421 -11.64287 -11.54698 -11.38408 -11.17456 -10.82891 -9.55344 -9.30665 -8.88914 -8.58468 -6.21129 0.95971 1.05953 1.39927 1.51083 1.55703 2.23773 2.65207 2.74169 3.18428 3.71835 3.92386 4.04584 4.09885 4.17344 4.20897 4.31187 4.39689 4.44103 4.48261 4.54651 4.60708 4.63698 4.78138 4.85243 4.87827 4.89494 4.99471 5.01900 5.12815 5.16367 5.18227 5.20440 5.27116 5.32383 5.38436 5.40879 5.54980 5.68636 6.00533 6.07478 6.12338 6.25273 6.52471 6.58217 6.82525 6.96331 7.12951 8.38244 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.003501 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.549152 B = 7994.792099 C = 9269.868587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.062 3.938 4 N -0.699 5.699 5 C 0.091 3.909 6 H 0.073 0.927 7 C -0.171 4.171 8 C -0.095 4.095 9 C 0.072 3.928 10 O -0.340 6.340 11 C 0.001 3.999 12 C -0.176 4.176 13 C -0.155 4.155 14 C 0.054 3.946 15 C -0.501 4.501 16 H 0.077 0.923 17 C 0.033 3.967 18 N -0.833 5.833 19 Si 0.983 3.017 20 H -0.261 1.261 21 H -0.269 1.269 22 H -0.259 1.259 23 C -0.205 4.205 24 C -0.123 4.123 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.348 0.652 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.287 0.713 43 H 0.111 0.889 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.670 -0.289 16.746 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.067 4.067 4 N -0.331 5.331 5 C -0.019 4.019 6 H 0.092 0.908 7 C -0.230 4.230 8 C -0.133 4.133 9 C -0.003 4.003 10 O -0.256 6.256 11 C -0.043 4.043 12 C -0.195 4.195 13 C -0.175 4.175 14 C 0.052 3.948 15 C -0.531 4.531 16 H 0.095 0.905 17 C -0.180 4.180 18 N -0.459 5.459 19 Si 0.804 3.196 20 H -0.186 1.186 21 H -0.193 1.193 22 H -0.183 1.183 23 C -0.225 4.225 24 C -0.142 4.142 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.167 0.833 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.129 0.871 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.699 -0.197 16.116 17.862 hybrid contribution -0.514 0.014 -0.154 0.537 sum -8.214 -0.183 15.962 17.952 Atomic orbital electron populations 1.21711 0.94768 1.02193 1.01992 1.21484 0.96287 0.96004 1.02176 1.21995 0.87044 0.97311 1.00366 1.60506 1.08025 1.13759 1.50829 1.21419 0.94492 0.89640 0.96358 0.90834 1.22370 1.02444 1.02515 0.95662 1.21485 0.97625 1.02297 0.91862 1.22604 0.82471 1.00669 0.94552 1.85763 1.31695 1.85875 1.22249 1.18725 0.94137 1.07922 0.83535 1.20791 0.96771 1.06285 0.95631 1.20901 0.98357 1.05030 0.93185 1.17942 0.91758 0.91054 0.94014 1.19701 0.99418 1.40049 0.93926 0.90491 1.26743 0.93915 0.93429 1.03943 1.69898 1.08371 1.28620 1.39056 0.85247 0.78776 0.79306 0.76320 1.18582 1.19299 1.18320 1.20813 0.98228 1.09026 0.94418 1.19916 0.94795 1.04672 0.94780 0.92084 0.91939 0.93077 0.92815 0.91366 0.94086 0.92304 0.83324 0.91272 0.91880 0.91597 0.90516 0.90918 0.92625 0.94529 0.87118 0.87685 0.90298 0.87054 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.12 -2.04 6.19 30.60 0.19 -1.85 16 3 C 0.06 1.09 5.48 86.30 0.47 1.56 16 4 N -0.70 -13.81 5.70 -491.56 -2.80 -16.61 16 5 C 0.09 1.76 2.59 44.92 0.12 1.88 16 6 H 0.07 1.52 7.80 -2.39 -0.02 1.50 16 7 C -0.17 -2.42 9.16 71.98 0.66 -1.76 16 8 C -0.09 -2.33 5.26 30.60 0.16 -2.17 16 9 C 0.07 2.46 4.62 71.98 0.33 2.79 16 10 O -0.34 -14.31 10.12 -89.98 -0.91 -15.22 16 11 C 0.00 0.04 6.71 22.79 0.15 0.19 16 12 C -0.18 -8.80 8.96 22.11 0.20 -8.60 16 13 C -0.16 -8.60 8.64 22.49 0.19 -8.40 16 14 C 0.05 3.07 5.57 -21.28 -0.12 2.95 16 15 C -0.50 -27.86 9.04 23.40 0.21 -27.65 16 16 H 0.08 4.09 7.91 -2.91 -0.02 4.07 16 17 C 0.03 1.73 5.13 85.24 0.44 2.17 16 18 N -0.83 -44.91 10.96 21.82 0.24 -44.67 16 19 Si 0.98 39.16 29.60 68.60 2.03 41.19 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 23 C -0.21 -10.56 9.74 22.48 0.22 -10.34 16 24 C -0.12 -5.90 9.92 22.11 0.22 -5.68 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.04 0.61 7.44 -2.39 -0.02 0.59 16 31 H 0.06 1.19 8.06 -2.39 -0.02 1.17 16 32 H 0.35 5.89 8.47 -89.70 -0.76 5.13 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.79 7.45 -2.39 -0.02 0.78 16 35 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.06 1.99 7.25 -2.39 -0.02 1.97 16 39 H 0.04 1.28 7.66 -2.39 -0.02 1.26 16 40 H 0.11 5.04 6.27 -2.91 -0.02 5.02 16 41 H 0.11 6.03 6.16 -2.91 -0.02 6.01 16 42 H 0.29 14.00 8.30 -92.70 -0.77 13.23 16 43 H 0.11 5.28 8.06 -2.91 -0.02 5.25 16 44 H 0.12 5.09 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -62.00 356.78 2.92 -59.08 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.20 Total: 32.55 kcal Atomic # 6 Polarization: -60.48 SS G_CDS: 4.16 Total: -56.32 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -2.56 Total: -61.28 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.91 Total: -15.22 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -62.00 2.92 -59.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403451663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.580 kcal (2) G-P(sol) polarization free energy of solvation -61.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds