Wall clock time and date at job start Mon Mar 30 2020 07:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46792 * 2 1 4 4 C 1.52993 * 109.47176 * 119.99889 * 2 1 3 5 5 H 1.08994 * 109.47357 * 300.00046 * 4 2 1 6 6 C 1.52999 * 109.47176 * 180.02562 * 4 2 1 7 7 C 1.52998 * 109.47169 * 60.00342 * 4 2 1 8 8 N 1.46903 * 109.47399 * 185.00120 * 7 4 2 9 9 C 1.46893 * 111.00065 * 179.97438 * 8 7 4 10 10 C 1.50707 * 109.46955 * 179.97438 * 9 8 7 11 11 C 1.38321 * 119.96235 * 269.72272 * 10 9 8 12 12 C 1.38280 * 120.13700 * 179.76757 * 11 10 9 13 13 C 1.38127 * 120.06774 * 0.50859 * 12 11 10 14 14 C 1.38853 * 119.92806 * 359.74640 * 13 12 11 15 15 O 1.35757 * 120.06919 * 179.97438 * 14 13 12 16 16 C 1.34827 * 116.99849 * 354.48487 * 15 14 13 17 17 H 1.08006 * 120.00052 * 5.06617 * 16 15 14 18 18 C 1.38652 * 120.00267 * 185.05922 * 16 15 14 19 19 N 1.31556 * 119.99911 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00268 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47483 * 89.99813 * 20 18 16 22 22 H 1.48498 * 109.46765 * 210.00050 * 20 18 16 23 23 H 1.48501 * 109.46757 * 329.99451 * 20 18 16 24 24 C 1.38079 * 119.96612 * 90.00049 * 10 9 8 25 25 H 1.09003 * 109.47141 * 300.00049 * 1 2 3 26 26 H 1.08999 * 109.47655 * 59.99985 * 1 2 3 27 27 H 1.09003 * 109.47434 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46786 * 240.00589 * 2 1 3 29 29 H 1.09004 * 109.46907 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47496 * 300.00135 * 3 2 1 31 31 H 1.09003 * 109.47318 * 60.00059 * 3 2 1 32 32 H 1.09003 * 109.47434 * 59.99709 * 6 4 2 33 33 H 1.08999 * 109.47655 * 180.02562 * 6 4 2 34 34 H 1.09003 * 109.47141 * 300.00062 * 6 4 2 35 35 H 1.09000 * 109.47367 * 64.99949 * 7 4 2 36 36 H 1.09000 * 109.47018 * 304.99447 * 7 4 2 37 37 H 1.00899 * 111.00253 * 56.04030 * 8 7 4 38 38 H 1.09000 * 109.47483 * 59.99567 * 9 8 7 39 39 H 1.09001 * 109.47474 * 299.99753 * 9 8 7 40 40 H 1.08002 * 119.93628 * 359.97438 * 11 10 9 41 41 H 1.07998 * 119.96810 * 180.25311 * 12 11 10 42 42 H 1.08000 * 120.03454 * 179.72133 * 13 12 11 43 43 H 0.97001 * 120.00363 * 179.97438 * 19 18 16 44 44 H 1.07995 * 120.03338 * 359.95102 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1391 6 6 3.5700 -0.7206 1.2495 7 6 1.5301 -2.1637 1.2492 8 7 1.9187 -2.8205 2.5044 9 6 1.4443 -4.2103 2.5402 10 6 1.8614 -4.8501 3.8394 11 6 3.0736 -5.5108 3.9262 12 6 3.4620 -6.0950 5.1178 13 6 2.6353 -6.0296 6.2225 14 6 1.4156 -5.3717 6.1369 15 8 0.6006 -5.3060 7.2207 16 6 0.9806 -5.9961 8.3149 17 1 1.9357 -6.5001 8.3308 18 6 0.1452 -6.0588 9.4197 19 7 -1.0184 -5.4454 9.4002 20 14 0.6719 -7.0144 10.9359 21 1 1.4111 -6.1139 11.8566 22 1 -0.5293 -7.5497 11.6256 23 1 1.5525 -8.1394 10.5308 24 6 1.0306 -4.7813 4.9401 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.9330 0.3072 1.2497 33 1 3.9334 -1.2348 2.1392 34 1 3.9337 -1.2342 0.3595 35 1 1.9647 -2.7028 0.4074 36 1 0.4438 -2.1650 1.1597 37 1 1.5819 -2.3032 3.3026 38 1 1.8780 -4.7638 1.7073 39 1 0.3574 -4.2255 2.4598 40 1 3.7195 -5.5675 3.0626 41 1 4.4108 -6.6066 5.1837 42 1 2.9372 -6.4899 7.1516 43 1 -1.6030 -5.4895 10.1730 44 1 0.0826 -4.2685 4.8705 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081046485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:49 Heat of formation + Delta-G solvation = -27.676835 kcal Electronic energy + Delta-G solvation = -20868.626340 eV Core-core repulsion = 17785.640935 eV Total energy + Delta-G solvation = -3082.985405 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.09778 -38.28454 -36.75197 -34.84872 -32.27249 -31.42323 -29.91891 -28.97062 -27.80461 -25.80429 -25.16633 -23.90169 -22.01797 -21.52092 -20.68768 -19.71022 -17.62351 -16.97703 -15.64699 -15.34246 -15.21352 -15.00817 -14.44930 -14.38107 -14.22418 -13.75266 -13.58222 -13.41572 -13.22047 -12.61737 -12.50833 -12.43387 -12.09951 -11.93139 -11.87159 -11.77765 -11.55658 -11.25490 -11.18362 -10.83868 -10.73574 -10.67495 -10.60651 -10.54752 -10.45418 -10.28075 -9.31710 -8.82093 -8.33337 -8.00986 -7.19813 -6.42694 -4.01931 2.13737 2.42398 3.13918 3.14800 3.19562 3.98244 4.21517 4.61691 4.67865 4.69761 4.88702 4.98993 5.09728 5.21547 5.30975 5.36780 5.42008 5.43395 5.48208 5.59073 5.63386 5.65903 5.75334 5.77241 5.81645 5.90208 5.90843 5.94878 6.00456 6.03099 6.14842 6.22831 6.31967 6.35961 6.41355 6.69053 6.93978 7.09709 7.12752 7.31375 7.41939 7.46072 7.52640 7.85826 8.02440 9.03271 9.73968 10.75609 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026341 B = 0.003005 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.714993 B = 9314.028341 C = 9860.239075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.085 4.085 5 H 0.068 0.932 6 C -0.140 4.140 7 C 0.060 3.940 8 N -0.682 5.682 9 C 0.106 3.894 10 C -0.046 4.046 11 C -0.189 4.189 12 C -0.078 4.078 13 C -0.231 4.231 14 C 0.153 3.847 15 O -0.181 6.181 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.185 4.185 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.031 0.969 37 H 0.344 0.656 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.269 0.731 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.487 7.870 -16.252 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.103 4.103 5 H 0.087 0.913 6 C -0.198 4.198 7 C -0.069 4.069 8 N -0.313 5.313 9 C -0.022 4.022 10 C -0.047 4.047 11 C -0.208 4.208 12 C -0.096 4.096 13 C -0.251 4.251 14 C 0.099 3.901 15 O -0.084 6.084 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.205 4.205 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.162 0.838 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.688 7.847 -16.285 18.950 hybrid contribution -0.660 -0.413 0.985 1.255 sum 5.027 7.434 -15.300 17.737 Atomic orbital electron populations 1.21935 0.95486 1.01904 1.01589 1.21122 0.95528 0.96186 0.98191 1.21885 1.01271 0.95895 1.01486 1.21170 0.96676 0.94782 0.97710 0.91316 1.21780 0.94557 1.00831 1.02584 1.22104 0.97531 0.94213 0.93092 1.60491 1.64163 1.02404 1.04255 1.20779 0.97007 0.88896 0.95517 1.19174 0.94452 0.97587 0.93488 1.20414 0.97374 1.05242 0.97774 1.20747 0.98068 0.97942 0.92825 1.21189 0.96305 1.07670 0.99937 1.19303 0.89861 0.92889 0.88002 1.83976 1.43911 1.62119 1.18442 1.21311 1.04286 1.30618 0.90525 0.89140 1.25271 0.95036 0.97502 0.98718 1.70037 1.08854 1.40554 1.30576 0.85724 0.78250 0.79308 0.80218 1.19902 1.20287 1.19225 1.20028 1.01304 1.07895 0.91264 0.92699 0.92973 0.92365 0.91345 0.92306 0.93043 0.92749 0.93287 0.91271 0.93296 0.91355 0.95086 0.83813 0.90768 0.94841 0.87653 0.87528 0.85680 0.92093 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.85 37.16 0.33 -0.91 16 2 C -0.09 -0.76 2.51 -90.62 -0.23 -0.98 16 3 C -0.15 -1.13 8.84 37.16 0.33 -0.80 16 4 C -0.08 -0.81 2.12 -90.62 -0.19 -1.01 16 5 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 6 C -0.14 -1.38 8.73 37.16 0.32 -1.06 16 7 C 0.06 0.64 4.86 -3.82 -0.02 0.62 16 8 N -0.68 -8.98 5.95 -115.06 -0.68 -9.66 16 9 C 0.11 1.53 5.81 -4.98 -0.03 1.50 16 10 C -0.05 -0.84 5.39 -104.65 -0.56 -1.40 16 11 C -0.19 -3.36 9.70 -39.54 -0.38 -3.74 16 12 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 13 C -0.23 -5.13 9.17 -39.39 -0.36 -5.49 16 14 C 0.15 3.73 6.65 -39.11 -0.26 3.47 16 15 O -0.18 -5.21 9.76 0.04 0.00 -5.21 16 16 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16 17 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.55 13.67 55.48 0.76 -24.80 16 20 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.18 -3.93 9.65 -39.40 -0.38 -4.31 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.49 6.32 -51.93 -0.33 0.16 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.44 6.43 -51.93 -0.33 0.10 16 33 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.03 0.33 6.17 -51.93 -0.32 0.01 16 37 H 0.34 4.74 8.72 -39.29 -0.34 4.40 16 38 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 39 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 40 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -29.78 353.98 -8.50 -38.28 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.26 Total: 6.10 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -1.63 Total: -25.73 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.07 Total: -34.46 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: 0.00 Total: -5.21 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.78 -8.50 -38.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081046485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.608 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds