Wall clock time and date at job start Mon Mar 30 2020 07:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46792 * 2 1 4 4 C 1.52993 * 109.47176 * 119.99889 * 2 1 3 5 5 H 1.08994 * 109.47357 * 300.00046 * 4 2 1 6 6 C 1.52999 * 109.47176 * 180.02562 * 4 2 1 7 7 C 1.52998 * 109.47169 * 60.00342 * 4 2 1 8 8 N 1.46903 * 109.47399 * 185.00120 * 7 4 2 9 9 C 1.46893 * 111.00065 * 179.97438 * 8 7 4 10 10 C 1.50707 * 109.46955 * 179.97438 * 9 8 7 11 11 C 1.38321 * 119.96235 * 269.72272 * 10 9 8 12 12 C 1.38280 * 120.13700 * 179.76757 * 11 10 9 13 13 C 1.38127 * 120.06774 * 0.50859 * 12 11 10 14 14 C 1.38853 * 119.92806 * 359.74640 * 13 12 11 15 15 O 1.35757 * 120.06919 * 179.97438 * 14 13 12 16 16 C 1.34827 * 116.99849 * 354.48487 * 15 14 13 17 17 H 1.08006 * 120.00052 * 5.06617 * 16 15 14 18 18 C 1.38652 * 120.00267 * 185.05922 * 16 15 14 19 19 N 1.31556 * 119.99911 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00268 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47483 * 89.99813 * 20 18 16 22 22 H 1.48498 * 109.46765 * 210.00050 * 20 18 16 23 23 H 1.48501 * 109.46757 * 329.99451 * 20 18 16 24 24 C 1.38079 * 119.96612 * 90.00049 * 10 9 8 25 25 H 1.09003 * 109.47141 * 300.00049 * 1 2 3 26 26 H 1.08999 * 109.47655 * 59.99985 * 1 2 3 27 27 H 1.09003 * 109.47434 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46786 * 240.00589 * 2 1 3 29 29 H 1.09004 * 109.46907 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47496 * 300.00135 * 3 2 1 31 31 H 1.09003 * 109.47318 * 60.00059 * 3 2 1 32 32 H 1.09003 * 109.47434 * 59.99709 * 6 4 2 33 33 H 1.08999 * 109.47655 * 180.02562 * 6 4 2 34 34 H 1.09003 * 109.47141 * 300.00062 * 6 4 2 35 35 H 1.09000 * 109.47367 * 64.99949 * 7 4 2 36 36 H 1.09000 * 109.47018 * 304.99447 * 7 4 2 37 37 H 1.00899 * 111.00253 * 56.04030 * 8 7 4 38 38 H 1.09000 * 109.47483 * 59.99567 * 9 8 7 39 39 H 1.09001 * 109.47474 * 299.99753 * 9 8 7 40 40 H 1.08002 * 119.93628 * 359.97438 * 11 10 9 41 41 H 1.07998 * 119.96810 * 180.25311 * 12 11 10 42 42 H 1.08000 * 120.03454 * 179.72133 * 13 12 11 43 43 H 0.97001 * 120.00363 * 179.97438 * 19 18 16 44 44 H 1.07995 * 120.03338 * 359.95102 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1391 6 6 3.5700 -0.7206 1.2495 7 6 1.5301 -2.1637 1.2492 8 7 1.9187 -2.8205 2.5044 9 6 1.4443 -4.2103 2.5402 10 6 1.8614 -4.8501 3.8394 11 6 3.0736 -5.5108 3.9262 12 6 3.4620 -6.0950 5.1178 13 6 2.6353 -6.0296 6.2225 14 6 1.4156 -5.3717 6.1369 15 8 0.6006 -5.3060 7.2207 16 6 0.9806 -5.9961 8.3149 17 1 1.9357 -6.5001 8.3308 18 6 0.1452 -6.0588 9.4197 19 7 -1.0184 -5.4454 9.4002 20 14 0.6719 -7.0144 10.9359 21 1 1.4111 -6.1139 11.8566 22 1 -0.5293 -7.5497 11.6256 23 1 1.5525 -8.1394 10.5308 24 6 1.0306 -4.7813 4.9401 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.9330 0.3072 1.2497 33 1 3.9334 -1.2348 2.1392 34 1 3.9337 -1.2342 0.3595 35 1 1.9647 -2.7028 0.4074 36 1 0.4438 -2.1650 1.1597 37 1 1.5819 -2.3032 3.3026 38 1 1.8780 -4.7638 1.7073 39 1 0.3574 -4.2255 2.4598 40 1 3.7195 -5.5675 3.0626 41 1 4.4108 -6.6066 5.1837 42 1 2.9372 -6.4899 7.1516 43 1 -1.6030 -5.4895 10.1730 44 1 0.0826 -4.2685 4.8705 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081046485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:48 Heat of formation + Delta-G solvation = -44.851396 kcal Electronic energy + Delta-G solvation = -20869.371085 eV Core-core repulsion = 17785.640935 eV Total energy + Delta-G solvation = -3083.730150 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.80028 -39.23144 -38.33392 -35.98091 -34.28572 -32.57824 -31.12529 -30.52017 -28.61023 -27.42982 -26.55592 -24.98745 -23.20839 -22.77745 -22.28996 -20.51825 -19.46588 -18.77453 -16.84153 -16.71930 -16.25041 -16.19221 -15.99760 -15.94669 -15.48210 -15.23409 -14.83912 -14.51733 -14.28353 -14.00854 -13.97895 -13.53877 -13.16910 -13.10610 -12.96938 -12.86994 -12.61904 -12.58426 -12.40795 -12.25142 -12.21465 -12.07475 -11.90717 -11.42268 -11.29988 -11.24796 -11.09743 -10.80216 -9.72165 -9.26781 -8.97313 -8.46933 -6.15372 0.52935 0.76791 1.34692 1.44170 1.52300 2.17763 2.79684 3.11076 3.35827 3.55745 3.86814 3.95453 4.01426 4.11374 4.14209 4.27410 4.34060 4.44741 4.61599 4.63792 4.65259 4.70042 4.75084 4.79334 4.81229 4.83950 4.96651 5.05152 5.07252 5.09363 5.13858 5.17610 5.27418 5.31503 5.32400 5.44306 5.59808 5.63374 5.66724 5.74336 5.81193 6.02866 6.08899 6.25737 6.39719 6.98014 7.79369 8.76518 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026341 B = 0.003005 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.714993 B = 9314.028341 C = 9860.239075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 C -0.147 4.147 4 C -0.081 4.081 5 H 0.058 0.942 6 C -0.136 4.136 7 C 0.062 3.938 8 N -0.685 5.685 9 C 0.111 3.889 10 C -0.037 4.037 11 C -0.170 4.170 12 C -0.073 4.073 13 C -0.245 4.245 14 C 0.113 3.887 15 O -0.234 6.234 16 C -0.413 4.413 17 H 0.101 0.899 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.253 1.253 24 C -0.196 4.196 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.337 0.663 38 H 0.097 0.903 39 H 0.035 0.965 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.117 0.883 43 H 0.272 0.728 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.630 7.499 -18.386 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 C -0.204 4.204 4 C -0.100 4.100 5 H 0.076 0.924 6 C -0.193 4.193 7 C -0.066 4.066 8 N -0.316 5.316 9 C -0.017 4.017 10 C -0.037 4.037 11 C -0.189 4.189 12 C -0.091 4.091 13 C -0.265 4.265 14 C 0.063 3.937 15 O -0.141 6.141 16 C -0.489 4.489 17 H 0.118 0.882 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.838 3.162 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.177 1.177 24 C -0.216 4.216 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.155 0.845 38 H 0.115 0.885 39 H 0.053 0.947 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.867 7.482 -18.477 21.431 hybrid contribution -1.195 -0.227 1.324 1.798 sum 6.672 7.255 -17.153 19.783 Atomic orbital electron populations 1.21931 0.95439 1.01754 1.01759 1.21090 0.95514 0.96477 0.97533 1.21876 1.01432 0.95422 1.01716 1.21138 0.96621 0.94166 0.98078 0.92397 1.21730 0.94507 1.01214 1.01870 1.22154 0.97813 0.94676 0.91984 1.60521 1.64124 1.01861 1.05079 1.20777 0.97359 0.89685 0.93900 1.19584 0.93841 0.96502 0.93806 1.20940 0.97021 1.02500 0.98457 1.21160 0.98782 0.97315 0.91831 1.21307 0.96197 1.07866 1.01080 1.19866 0.90843 0.94853 0.88154 1.83937 1.46057 1.64296 1.19833 1.21813 1.05008 1.31000 0.91096 0.88195 1.26586 0.94893 0.98486 1.02118 1.70185 1.10646 1.43236 1.32005 0.84589 0.78212 0.78013 0.75413 1.18786 1.19572 1.17670 1.20232 1.01915 1.07931 0.91528 0.93367 0.92010 0.92664 0.90695 0.92036 0.92134 0.93246 0.92470 0.93120 0.92706 0.90485 0.94846 0.84549 0.88518 0.94732 0.83838 0.83775 0.86477 0.91880 0.87700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.85 71.98 0.64 -1.58 16 2 C -0.09 -1.26 2.51 -10.80 -0.03 -1.29 16 3 C -0.15 -1.95 8.84 71.98 0.64 -1.32 16 4 C -0.08 -1.42 2.12 -10.80 -0.02 -1.45 16 5 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 6 C -0.14 -2.41 8.73 71.98 0.63 -1.78 16 7 C 0.06 1.20 4.86 86.30 0.42 1.62 16 8 N -0.69 -16.68 5.95 -517.93 -3.08 -19.76 16 9 C 0.11 2.92 5.81 85.56 0.50 3.41 16 10 C -0.04 -1.26 5.39 -19.88 -0.11 -1.36 16 11 C -0.17 -5.44 9.70 22.30 0.22 -5.23 16 12 C -0.07 -2.55 10.04 22.25 0.22 -2.33 16 13 C -0.25 -10.91 9.17 22.39 0.21 -10.70 16 14 C 0.11 5.73 6.65 22.58 0.15 5.88 16 15 O -0.23 -14.37 9.76 -22.78 -0.22 -14.59 16 16 C -0.41 -24.45 9.49 67.92 0.64 -23.80 16 17 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 18 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 19 N -0.92 -57.30 13.67 21.61 0.30 -57.01 16 20 Si 1.02 43.36 29.55 68.60 2.03 45.39 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 23 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 24 C -0.20 -8.51 9.65 22.39 0.22 -8.29 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.83 6.32 -2.39 -0.02 0.82 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 0.78 6.43 -2.39 -0.02 0.77 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.91 6.43 -2.39 -0.02 0.89 16 33 H 0.05 1.09 7.75 -2.39 -0.02 1.07 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.03 0.65 6.17 -2.39 -0.01 0.63 16 37 H 0.34 9.04 8.72 -89.69 -0.78 8.26 16 38 H 0.10 2.16 8.08 -2.39 -0.02 2.14 16 39 H 0.03 0.91 8.08 -2.39 -0.02 0.89 16 40 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 41 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 42 H 0.12 5.30 5.64 -2.91 -0.02 5.28 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -68.47 353.98 4.00 -64.48 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: 0.19 Total: 30.59 kcal Atomic # 6 Polarization: -53.89 SS G_CDS: 4.78 Total: -49.10 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -2.78 Total: -76.77 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.22 Total: -14.59 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -68.47 4.00 -64.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081046485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.624 kcal (2) G-P(sol) polarization free energy of solvation -68.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds