Wall clock time and date at job start Mon Mar 30 2020 07:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00360 * 2 1 4 4 C 1.52992 * 109.47296 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47103 * 304.99796 * 4 3 2 6 6 C 1.52997 * 109.47482 * 65.00043 * 4 3 2 7 7 C 1.52999 * 109.46961 * 185.00404 * 4 3 2 8 8 N 1.46904 * 109.47486 * 175.00152 * 7 4 3 9 9 C 1.46894 * 111.00353 * 179.97438 * 8 7 4 10 10 H 1.09001 * 109.47272 * 34.99670 * 9 8 7 11 11 C 1.52999 * 109.47212 * 154.99638 * 9 8 7 12 12 C 1.50708 * 109.47094 * 294.99873 * 11 9 8 13 13 H 1.07997 * 119.99992 * 0.02562 * 12 11 9 14 14 C 1.37871 * 119.99838 * 179.97438 * 12 11 9 15 15 N 1.31519 * 120.00182 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00011 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46987 * 90.00060 * 16 14 12 18 18 H 1.48502 * 109.47408 * 210.00160 * 16 14 12 19 19 H 1.48497 * 109.46961 * 330.00434 * 16 14 12 20 20 C 1.50693 * 109.47066 * 274.99972 * 9 8 7 21 21 C 1.38235 * 119.99961 * 319.72095 * 20 9 8 22 22 C 1.38242 * 120.00178 * 179.81170 * 21 20 9 23 23 C 1.38237 * 119.99677 * 0.40189 * 22 21 20 24 24 C 1.38236 * 120.00251 * 359.85606 * 23 22 21 25 25 C 1.38237 * 120.00048 * 359.95373 * 24 23 22 26 26 H 1.08999 * 109.46958 * 60.00148 * 1 2 3 27 27 H 1.09008 * 109.46949 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47148 * 299.99783 * 1 2 3 29 29 H 1.08996 * 109.46500 * 59.99760 * 3 2 1 30 30 H 1.09001 * 109.46575 * 300.00539 * 3 2 1 31 31 H 1.09002 * 109.47153 * 59.99783 * 6 4 3 32 32 H 1.09001 * 109.46832 * 299.99974 * 6 4 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 6 4 3 34 34 H 1.09006 * 109.47194 * 294.99813 * 7 4 3 35 35 H 1.08997 * 109.47756 * 54.99294 * 7 4 3 36 36 H 1.00906 * 110.99364 * 303.95285 * 8 7 4 37 37 H 1.08997 * 109.46996 * 54.99621 * 11 9 8 38 38 H 1.08997 * 109.47134 * 175.00409 * 11 9 8 39 39 H 0.97003 * 120.00019 * 179.97438 * 15 14 12 40 40 H 1.08006 * 120.00107 * 0.02562 * 21 20 9 41 41 H 1.07995 * 119.99988 * 180.23529 * 22 21 20 42 42 H 1.07996 * 119.99698 * 179.83279 * 23 22 21 43 43 H 1.07996 * 120.00127 * 179.97438 * 24 23 22 44 44 H 1.07992 * 120.00502 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8514 0.5681 0.8410 6 6 3.9952 0.5368 -1.3083 7 6 4.1573 2.5768 0.1252 8 7 5.6162 2.4525 0.2449 9 6 6.2488 3.7726 0.3673 10 1 5.5983 4.4358 0.9375 11 6 7.5905 3.6303 1.0888 12 6 7.3535 3.1690 2.5039 13 1 6.3467 2.9944 2.8534 14 6 8.4221 2.9690 3.3518 15 7 9.6482 3.1811 2.9259 16 14 8.1284 2.3966 5.1055 17 1 8.1350 0.9122 5.1494 18 1 9.2035 2.9226 5.9845 19 1 6.8132 2.8998 5.5767 20 6 6.4756 4.3502 -1.0059 21 6 6.9096 3.5358 -2.0352 22 6 7.1140 4.0648 -3.2959 23 6 6.8923 5.4099 -3.5253 24 6 6.4635 6.2253 -2.4947 25 6 6.2553 5.6956 -1.2350 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.6792 1.1533 -2.1499 32 1 3.5521 -0.4550 -1.3978 33 1 5.0819 0.4512 -1.3089 34 1 3.9143 3.1647 -0.7600 35 1 3.7610 3.0732 1.0109 36 1 5.8659 1.8581 1.0212 37 1 8.2079 2.8992 0.5670 38 1 8.1003 4.5936 1.1013 39 1 10.4000 3.0407 3.5226 40 1 7.0857 2.4855 -1.8552 41 1 7.4494 3.4278 -4.1009 42 1 7.0546 5.8237 -4.5095 43 1 6.2907 7.2762 -2.6739 44 1 5.9199 6.3325 -0.4300 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188161663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:41 Heat of formation + Delta-G solvation = -41.932663 kcal Electronic energy + Delta-G solvation = -21628.018833 eV Core-core repulsion = 18544.415250 eV Total energy + Delta-G solvation = -3083.603584 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.99882 -38.22468 -36.42311 -34.21011 -32.44895 -30.46657 -30.20274 -28.60716 -27.25942 -25.96144 -24.86295 -23.32876 -22.07983 -21.84422 -20.08901 -19.41884 -16.61987 -16.46008 -16.08523 -16.01111 -15.33310 -14.97278 -14.68187 -14.50652 -14.29188 -13.91577 -13.43702 -13.13841 -12.79685 -12.70118 -12.34317 -12.24922 -12.03735 -11.79691 -11.61720 -11.24999 -11.09255 -11.01374 -10.82452 -10.61492 -10.51706 -10.43839 -10.36506 -10.25624 -9.69896 -9.58684 -9.17946 -8.45328 -8.39150 -8.04992 -7.73479 -6.05787 -4.10032 1.88207 1.93712 3.28233 3.35324 3.37168 3.69094 4.31466 4.41610 4.85991 4.99643 5.12775 5.21125 5.25813 5.30344 5.33604 5.35378 5.41973 5.47013 5.51035 5.57412 5.65346 5.75406 5.87325 6.02543 6.05967 6.08909 6.15030 6.31884 6.33706 6.46231 6.51940 6.57477 6.67327 6.74105 6.93447 7.00182 7.11754 7.23072 7.46128 7.55076 7.59566 7.92108 7.99274 8.20975 8.30478 8.95549 9.54592 11.04685 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.006438 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.314078 B = 4348.262443 C = 6927.740684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.067 3.933 4 C -0.087 4.087 5 H 0.078 0.922 6 C -0.131 4.131 7 C 0.068 3.932 8 N -0.676 5.676 9 C 0.128 3.872 10 H 0.040 0.960 11 C 0.029 3.971 12 C -0.526 4.526 13 H 0.053 0.947 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.890 3.110 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.052 4.052 21 C -0.087 4.087 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.128 4.128 25 C -0.125 4.125 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.024 0.976 36 H 0.358 0.642 37 H 0.029 0.971 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.180 -0.663 -9.582 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.010 4.010 4 C -0.106 4.106 5 H 0.096 0.904 6 C -0.188 4.188 7 C -0.062 4.062 8 N -0.309 5.309 9 C 0.018 3.982 10 H 0.058 0.942 11 C -0.008 4.008 12 C -0.564 4.564 13 H 0.071 0.929 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.718 3.282 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.053 4.053 21 C -0.105 4.105 22 C -0.148 4.148 23 C -0.157 4.157 24 C -0.146 4.146 25 C -0.143 4.143 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.180 0.820 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.146 0.854 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.769 -0.880 -10.183 16.356 hybrid contribution -0.549 0.328 1.930 2.034 sum -13.319 -0.552 -8.253 15.678 Atomic orbital electron populations 1.22705 0.81583 1.02443 0.99751 1.87884 1.19164 1.28341 1.95360 1.22592 0.94392 0.84215 0.99811 1.21095 0.91627 0.97570 1.00345 0.90394 1.21626 1.02315 0.99449 0.95416 1.21858 0.89753 0.94804 0.99797 1.60385 1.05768 1.13856 1.50931 1.20630 0.98680 0.88652 0.90228 0.94236 1.19251 0.89638 0.97929 0.94021 1.21116 0.92598 1.46021 0.96673 0.92907 1.24966 0.95153 0.95340 0.98443 1.69966 0.98158 1.48552 1.36007 0.86634 0.77831 0.79015 0.84750 1.20536 1.21230 1.20017 1.20208 0.95992 0.92918 0.96162 1.21051 0.97201 1.00512 0.91713 1.21126 1.01246 0.95199 0.97278 1.20967 1.01904 0.94239 0.98547 1.20963 1.01178 0.99075 0.93414 1.21042 1.01396 0.95245 0.96648 0.94321 0.89868 0.94290 0.93583 0.93460 0.93639 0.93177 0.91161 0.91746 0.95819 0.81997 0.95296 0.95905 0.92876 0.85360 0.86921 0.87159 0.87015 0.86777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -5.06 10.24 -35.23 -0.36 -5.42 16 3 C 0.07 0.83 5.32 37.15 0.20 1.03 16 4 C -0.09 -1.22 2.77 -90.63 -0.25 -1.47 16 5 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 6 C -0.13 -1.79 8.98 37.16 0.33 -1.45 16 7 C 0.07 1.04 4.87 -3.82 -0.02 1.02 16 8 N -0.68 -12.18 5.01 -107.96 -0.54 -12.72 16 9 C 0.13 2.56 2.19 -68.87 -0.15 2.41 16 10 H 0.04 0.82 7.66 -51.93 -0.40 0.42 16 11 C 0.03 0.72 4.55 -27.88 -0.13 0.59 16 12 C -0.53 -13.99 8.12 -34.44 -0.28 -14.27 16 13 H 0.05 1.36 7.49 -52.49 -0.39 0.97 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 16 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.05 -0.96 4.71 -104.62 -0.49 -1.45 16 21 C -0.09 -1.51 9.32 -39.58 -0.37 -1.88 16 22 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 23 C -0.14 -1.99 10.05 -39.58 -0.40 -2.39 16 24 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 25 C -0.12 -2.11 9.67 -39.58 -0.38 -2.49 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.67 7.82 -51.93 -0.41 0.26 16 33 H 0.07 1.03 7.75 -51.93 -0.40 0.63 16 34 H 0.06 0.99 8.00 -51.93 -0.42 0.57 16 35 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 36 H 0.36 7.05 7.21 -39.29 -0.28 6.77 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.13 2.28 7.73 -52.48 -0.41 1.88 16 41 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 42 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.11 1.82 8.04 -52.49 -0.42 1.40 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -28.86 362.01 -9.20 -38.07 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -7.75 Total: 5.82 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -1.72 Total: -22.00 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.20 Total: -37.99 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.36 Total: -5.42 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.86 -9.20 -38.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188161663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.867 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds