Wall clock time and date at job start Mon Mar 30 2020 07:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00360 * 2 1 4 4 C 1.52992 * 109.47296 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47103 * 304.99796 * 4 3 2 6 6 C 1.52997 * 109.47482 * 65.00043 * 4 3 2 7 7 C 1.52999 * 109.46961 * 185.00404 * 4 3 2 8 8 N 1.46904 * 109.47486 * 175.00152 * 7 4 3 9 9 C 1.46894 * 111.00353 * 179.97438 * 8 7 4 10 10 H 1.09001 * 109.47272 * 34.99670 * 9 8 7 11 11 C 1.52999 * 109.47212 * 154.99638 * 9 8 7 12 12 C 1.50708 * 109.47094 * 294.99873 * 11 9 8 13 13 H 1.07997 * 119.99992 * 0.02562 * 12 11 9 14 14 C 1.37871 * 119.99838 * 179.97438 * 12 11 9 15 15 N 1.31519 * 120.00182 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00011 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46987 * 90.00060 * 16 14 12 18 18 H 1.48502 * 109.47408 * 210.00160 * 16 14 12 19 19 H 1.48497 * 109.46961 * 330.00434 * 16 14 12 20 20 C 1.50693 * 109.47066 * 274.99972 * 9 8 7 21 21 C 1.38235 * 119.99961 * 319.72095 * 20 9 8 22 22 C 1.38242 * 120.00178 * 179.81170 * 21 20 9 23 23 C 1.38237 * 119.99677 * 0.40189 * 22 21 20 24 24 C 1.38236 * 120.00251 * 359.85606 * 23 22 21 25 25 C 1.38237 * 120.00048 * 359.95373 * 24 23 22 26 26 H 1.08999 * 109.46958 * 60.00148 * 1 2 3 27 27 H 1.09008 * 109.46949 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47148 * 299.99783 * 1 2 3 29 29 H 1.08996 * 109.46500 * 59.99760 * 3 2 1 30 30 H 1.09001 * 109.46575 * 300.00539 * 3 2 1 31 31 H 1.09002 * 109.47153 * 59.99783 * 6 4 3 32 32 H 1.09001 * 109.46832 * 299.99974 * 6 4 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 6 4 3 34 34 H 1.09006 * 109.47194 * 294.99813 * 7 4 3 35 35 H 1.08997 * 109.47756 * 54.99294 * 7 4 3 36 36 H 1.00906 * 110.99364 * 303.95285 * 8 7 4 37 37 H 1.08997 * 109.46996 * 54.99621 * 11 9 8 38 38 H 1.08997 * 109.47134 * 175.00409 * 11 9 8 39 39 H 0.97003 * 120.00019 * 179.97438 * 15 14 12 40 40 H 1.08006 * 120.00107 * 0.02562 * 21 20 9 41 41 H 1.07995 * 119.99988 * 180.23529 * 22 21 20 42 42 H 1.07996 * 119.99698 * 179.83279 * 23 22 21 43 43 H 1.07996 * 120.00127 * 179.97438 * 24 23 22 44 44 H 1.07992 * 120.00502 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8514 0.5681 0.8410 6 6 3.9952 0.5368 -1.3083 7 6 4.1573 2.5768 0.1252 8 7 5.6162 2.4525 0.2449 9 6 6.2488 3.7726 0.3673 10 1 5.5983 4.4358 0.9375 11 6 7.5905 3.6303 1.0888 12 6 7.3535 3.1690 2.5039 13 1 6.3467 2.9944 2.8534 14 6 8.4221 2.9690 3.3518 15 7 9.6482 3.1811 2.9259 16 14 8.1284 2.3966 5.1055 17 1 8.1350 0.9122 5.1494 18 1 9.2035 2.9226 5.9845 19 1 6.8132 2.8998 5.5767 20 6 6.4756 4.3502 -1.0059 21 6 6.9096 3.5358 -2.0352 22 6 7.1140 4.0648 -3.2959 23 6 6.8923 5.4099 -3.5253 24 6 6.4635 6.2253 -2.4947 25 6 6.2553 5.6956 -1.2350 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.6792 1.1533 -2.1499 32 1 3.5521 -0.4550 -1.3978 33 1 5.0819 0.4512 -1.3089 34 1 3.9143 3.1647 -0.7600 35 1 3.7610 3.0732 1.0109 36 1 5.8659 1.8581 1.0212 37 1 8.2079 2.8992 0.5670 38 1 8.1003 4.5936 1.1013 39 1 10.4000 3.0407 3.5226 40 1 7.0857 2.4855 -1.8552 41 1 7.4494 3.4278 -4.1009 42 1 7.0546 5.8237 -4.5095 43 1 6.2907 7.2762 -2.6739 44 1 5.9199 6.3325 -0.4300 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188161663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:40 Heat of formation + Delta-G solvation = -57.800964 kcal Electronic energy + Delta-G solvation = -21628.706935 eV Core-core repulsion = 18544.415250 eV Total energy + Delta-G solvation = -3084.291685 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.32894 -39.22733 -37.74581 -35.70192 -34.32480 -31.72865 -31.47075 -30.39441 -28.16823 -27.15719 -26.39687 -24.64361 -23.67163 -23.18108 -21.30483 -20.86112 -18.58668 -17.46560 -17.42609 -17.04367 -16.65249 -16.43645 -16.20251 -15.68458 -15.61592 -15.23326 -14.77164 -14.55219 -14.14026 -14.01897 -13.72766 -13.52320 -13.33738 -13.22408 -13.03759 -12.81621 -12.52055 -12.47155 -12.34807 -12.14945 -11.90006 -11.78727 -11.63604 -11.56362 -11.36875 -11.12619 -10.59492 -10.58142 -9.66472 -9.40616 -9.21825 -8.19384 -6.30806 0.61361 0.67798 1.40058 1.40534 1.50594 2.39705 2.74246 3.05416 3.13346 3.55068 3.92037 4.07619 4.08205 4.16313 4.24818 4.31642 4.43268 4.46017 4.51319 4.52274 4.56589 4.65199 4.71360 4.80597 4.81495 4.85295 4.87008 4.93362 5.01391 5.18905 5.24198 5.32345 5.33708 5.44407 5.52348 5.52977 5.69830 5.75209 5.81842 5.90482 6.17231 6.24749 6.28755 6.41464 6.62942 6.83842 7.38283 8.91847 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.006438 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.314078 B = 4348.262443 C = 6927.740684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.072 3.928 4 C -0.083 4.083 5 H 0.064 0.936 6 C -0.122 4.122 7 C 0.075 3.925 8 N -0.673 5.673 9 C 0.143 3.857 10 H 0.031 0.969 11 C 0.041 3.959 12 C -0.533 4.533 13 H 0.059 0.941 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.960 3.040 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.266 1.266 20 C -0.077 4.077 21 C -0.103 4.103 22 C -0.131 4.131 23 C -0.132 4.132 24 C -0.126 4.126 25 C -0.140 4.140 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.346 0.654 37 H -0.001 1.001 38 H -0.011 1.011 39 H 0.263 0.737 40 H 0.115 0.885 41 H 0.138 0.862 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.920 -0.287 -10.577 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.005 4.005 4 C -0.102 4.102 5 H 0.082 0.918 6 C -0.180 4.180 7 C -0.054 4.054 8 N -0.305 5.305 9 C 0.033 3.967 10 H 0.049 0.951 11 C 0.004 3.996 12 C -0.571 4.571 13 H 0.077 0.923 14 C -0.191 4.191 15 N -0.569 5.569 16 Si 0.785 3.215 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.077 4.077 21 C -0.121 4.121 22 C -0.149 4.149 23 C -0.150 4.150 24 C -0.144 4.144 25 C -0.158 4.158 26 H 0.069 0.931 27 H 0.115 0.885 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.166 0.834 37 H 0.017 0.983 38 H 0.008 0.992 39 H 0.072 0.928 40 H 0.133 0.867 41 H 0.156 0.844 42 H 0.164 0.836 43 H 0.160 0.840 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.539 -0.503 -11.191 18.354 hybrid contribution -0.022 0.235 2.150 2.163 sum -14.561 -0.268 -9.041 17.142 Atomic orbital electron populations 1.22919 0.79656 1.03754 1.00746 1.87840 1.21307 1.28470 1.95556 1.22489 0.92893 0.84442 1.00684 1.21008 0.93129 0.96139 0.99920 0.91770 1.21531 1.01221 0.99728 0.95494 1.21835 0.87866 0.95945 0.99804 1.60406 1.07611 1.12481 1.50024 1.20283 0.95821 0.89500 0.91122 0.95137 1.19010 0.91674 0.94952 0.93952 1.21464 0.92865 1.45286 0.97485 0.92263 1.25852 0.94842 0.95485 1.02881 1.70105 0.99135 1.49982 1.37647 0.85533 0.77949 0.78682 0.79376 1.19786 1.21078 1.18988 1.20098 0.98317 0.93983 0.95343 1.21046 0.98290 0.99968 0.92840 1.21429 1.00411 0.96281 0.96789 1.21408 0.99956 0.93623 0.99973 1.21330 0.99875 1.00723 0.92428 1.21208 1.01982 0.94605 0.98049 0.93092 0.88512 0.93487 0.93038 0.92222 0.92971 0.92857 0.92727 0.91306 0.95989 0.83391 0.98289 0.99234 0.92831 0.86738 0.84439 0.83564 0.83969 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -10.12 10.24 -148.98 -1.53 -11.65 16 3 C 0.07 1.69 5.32 71.98 0.38 2.07 16 4 C -0.08 -2.29 2.77 -10.80 -0.03 -2.31 16 5 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 6 C -0.12 -3.30 8.98 71.98 0.65 -2.65 16 7 C 0.08 2.31 4.87 86.30 0.42 2.73 16 8 N -0.67 -25.13 5.01 -495.46 -2.48 -27.61 16 9 C 0.14 5.95 2.19 44.17 0.10 6.05 16 10 H 0.03 1.31 7.66 -2.39 -0.02 1.29 16 11 C 0.04 2.17 4.55 29.85 0.14 2.31 16 12 C -0.53 -29.24 8.12 25.60 0.21 -29.03 16 13 H 0.06 3.11 7.49 -2.91 -0.02 3.08 16 14 C 0.01 0.45 5.46 84.65 0.46 0.91 16 15 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 16 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 20 C -0.08 -2.88 4.71 -19.87 -0.09 -2.98 16 21 C -0.10 -3.63 9.32 22.27 0.21 -3.43 16 22 C -0.13 -3.77 10.05 22.27 0.22 -3.55 16 23 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 24 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 25 C -0.14 -4.67 9.67 22.27 0.22 -4.46 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.10 1.31 8.14 -2.38 -0.02 1.30 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.39 7.82 -2.39 -0.02 1.37 16 33 H 0.05 1.63 7.75 -2.38 -0.02 1.61 16 34 H 0.07 2.07 8.00 -2.38 -0.02 2.05 16 35 H 0.02 0.69 8.06 -2.39 -0.02 0.67 16 36 H 0.35 14.22 7.21 -89.69 -0.65 13.57 16 37 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 40 H 0.11 4.25 7.73 -2.91 -0.02 4.23 16 41 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 42 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 43 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 44 H 0.12 3.71 8.04 -2.91 -0.02 3.69 16 Total: -1.00 -63.76 362.01 3.17 -60.59 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.30 Total: 27.68 kcal Atomic # 6 Polarization: -43.61 SS G_CDS: 4.57 Total: -39.04 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -2.20 Total: -83.42 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.53 Total: -11.65 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -63.76 3.17 -60.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188161663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.794 kcal (2) G-P(sol) polarization free energy of solvation -63.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds