Wall clock time and date at job start Mon Mar 30 2020 07:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 116.99896 * 2 1 4 4 C 1.38752 * 120.05602 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94624 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05451 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.11339 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.97682 * 179.70149 * 7 6 5 9 9 H 1.08998 * 109.47474 * 159.99864 * 8 7 6 10 10 C 1.53000 * 109.47100 * 280.00139 * 8 7 6 11 11 N 1.46906 * 109.46913 * 40.00014 * 8 7 6 12 12 C 1.46895 * 111.00122 * 155.00044 * 11 8 7 13 13 C 1.53000 * 109.47163 * 179.97438 * 12 11 8 14 14 C 1.53002 * 109.46870 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.46928 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47063 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99898 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99511 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00538 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99568 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46938 * 89.99658 * 20 18 16 22 22 H 1.48496 * 109.47010 * 210.00188 * 20 18 16 23 23 H 1.48497 * 109.46797 * 329.99856 * 20 18 16 24 24 C 1.38172 * 120.05216 * 359.97438 * 7 6 5 25 25 H 1.09000 * 109.47169 * 299.99969 * 1 2 3 26 26 H 1.09000 * 109.46699 * 60.00470 * 1 2 3 27 27 H 1.08999 * 109.46638 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.02776 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.97450 * 180.02562 * 5 4 3 30 30 H 1.07997 * 119.94796 * 179.97438 * 6 5 4 31 31 H 1.08998 * 109.47182 * 59.99546 * 10 8 7 32 32 H 1.08996 * 109.47059 * 179.97438 * 10 8 7 33 33 H 1.08997 * 109.47297 * 299.99590 * 10 8 7 34 34 H 1.00900 * 110.99633 * 278.95538 * 11 8 7 35 35 H 1.09003 * 109.47264 * 300.00091 * 12 11 8 36 36 H 1.09002 * 109.47026 * 59.99739 * 12 11 8 37 37 H 1.08995 * 109.47182 * 299.99974 * 13 12 11 38 38 H 1.08998 * 109.46943 * 60.00544 * 13 12 11 39 39 H 1.08995 * 109.47111 * 299.99913 * 14 13 12 40 40 H 1.08990 * 109.47314 * 60.00492 * 14 13 12 41 41 H 1.09003 * 109.47038 * 300.00078 * 15 14 13 42 42 H 1.09002 * 109.47372 * 59.99799 * 15 14 13 43 43 H 0.96995 * 120.00404 * 180.02562 * 19 18 16 44 44 H 1.08002 * 120.02512 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 4.0560 2.5172 -0.0021 8 6 5.5608 2.5982 -0.0095 9 1 5.9772 1.6544 0.3425 10 6 6.0498 2.8720 -1.4332 11 7 5.9969 3.6864 0.8758 12 6 7.3612 3.4509 1.3667 13 6 7.7795 4.6027 2.2828 14 6 9.2008 4.3578 2.7935 15 6 9.6189 5.5093 3.7101 16 6 11.0186 5.2677 4.2137 17 1 11.5560 4.3814 3.9107 18 6 11.6130 6.1784 5.0613 19 7 10.9584 7.2575 5.4307 20 14 13.3483 5.8793 5.6850 21 1 14.3237 6.4905 4.7467 22 1 13.5037 6.4915 7.0289 23 1 13.5969 4.4181 5.7750 24 6 3.4311 1.2849 -0.0016 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 0.2128 2.3203 -0.0005 29 1 1.3339 4.5114 -0.0011 30 1 3.7922 4.6381 -0.0024 31 1 5.6333 3.8158 -1.7852 32 1 7.1381 2.9311 -1.4384 33 1 5.7262 2.0647 -2.0901 34 1 5.9287 4.5796 0.4115 35 1 7.3905 2.5143 1.9235 36 1 8.0465 3.3924 0.5211 37 1 7.7504 5.5391 1.7256 38 1 7.0943 4.6616 3.1284 39 1 9.2303 3.4214 3.3506 40 1 9.8858 4.2992 1.9478 41 1 9.5892 6.4460 3.1534 42 1 8.9338 5.5676 4.5560 43 1 11.3767 7.8983 6.0267 44 1 4.0207 0.3800 -0.0024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385248172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:49 Heat of formation + Delta-G solvation = -38.446306 kcal Electronic energy + Delta-G solvation = -20366.312335 eV Core-core repulsion = 17282.859931 eV Total energy + Delta-G solvation = -3083.452404 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.38260 -38.44965 -36.62389 -34.54220 -32.66640 -31.31198 -30.47099 -29.10218 -27.61610 -27.41783 -24.52915 -23.29740 -22.75459 -21.32568 -20.67815 -19.90135 -17.93944 -16.48361 -16.21537 -16.13144 -15.99575 -15.57845 -15.02153 -14.79248 -14.42728 -13.99368 -13.72966 -13.64087 -13.26676 -12.76811 -12.67722 -12.52303 -12.24329 -12.18883 -11.72868 -11.63520 -11.49981 -11.23059 -11.21395 -10.97318 -10.84582 -10.54801 -10.46114 -10.39178 -9.59742 -9.23877 -9.02601 -8.93988 -8.36517 -8.33598 -8.29955 -5.95285 -3.97383 1.16748 1.33240 3.00407 3.34408 3.40409 3.44096 3.59777 4.21479 4.49856 4.57480 4.60419 4.79896 4.82454 4.89195 4.93070 5.07356 5.13123 5.24120 5.32799 5.36546 5.39632 5.41305 5.55374 5.65694 5.68471 5.84640 5.89218 5.98309 6.12251 6.19031 6.26135 6.31650 6.48253 6.54922 6.61269 6.86347 6.99943 7.07467 7.18978 7.26226 7.41798 7.74026 7.90178 8.06044 8.48883 9.10201 9.66283 11.16051 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035957 B = 0.002290 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.518767 B =12225.411829 C =12274.431210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.124 3.876 4 C -0.214 4.214 5 C -0.082 4.082 6 C -0.133 4.133 7 C -0.024 4.024 8 C 0.120 3.880 9 H 0.087 0.913 10 C -0.177 4.177 11 N -0.682 5.682 12 C 0.060 3.940 13 C -0.115 4.115 14 C -0.109 4.109 15 C 0.021 3.979 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.149 4.149 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.340 0.660 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.014 0.986 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.230 -11.445 -15.096 28.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.079 3.921 4 C -0.233 4.233 5 C -0.100 4.100 6 C -0.152 4.152 7 C -0.025 4.025 8 C 0.010 3.990 9 H 0.106 0.894 10 C -0.236 4.236 11 N -0.312 5.312 12 C -0.069 4.069 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.016 4.016 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.168 4.168 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.159 0.841 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.421 -11.753 -14.417 28.369 hybrid contribution 1.153 0.291 -0.356 1.241 sum -20.268 -11.461 -14.773 27.575 Atomic orbital electron populations 1.23028 0.78557 1.03783 1.01293 1.86060 1.21249 1.27142 1.88928 1.18934 0.92209 0.84045 0.96943 1.21177 0.99764 0.92509 1.09873 1.20928 0.94695 0.96859 0.97530 1.20852 0.93293 0.98380 1.02654 1.19593 0.95059 0.92107 0.95711 1.20455 0.90529 0.96531 0.91530 0.89440 1.22477 1.01619 1.02434 0.97097 1.60600 1.25661 1.04343 1.40645 1.22115 0.86911 1.00308 0.97541 1.21633 0.98493 0.96456 0.98740 1.21587 0.93027 1.00790 0.99293 1.19095 0.95894 0.92646 0.93991 1.21293 1.00021 1.06563 1.27901 0.92778 1.25040 0.97837 0.95270 0.96452 1.69963 1.37281 1.11070 1.35246 0.86610 0.84983 0.78346 0.78153 1.20727 1.21247 1.19907 1.20224 0.91272 0.98126 1.07169 0.92667 0.92784 0.88366 0.85842 0.85909 0.85799 0.92142 0.91944 0.91919 0.84110 0.91206 0.95376 0.92771 0.91633 0.93443 0.93693 0.96755 0.96604 0.93067 0.85456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.29 10.50 -19.42 -0.20 -3.50 16 3 C 0.12 1.35 6.69 -39.22 -0.26 1.09 16 4 C -0.21 -2.08 9.04 -39.43 -0.36 -2.43 16 5 C -0.08 -0.79 10.04 -39.60 -0.40 -1.19 16 6 C -0.13 -1.42 9.32 -39.56 -0.37 -1.79 16 7 C -0.02 -0.27 4.95 -104.64 -0.52 -0.78 16 8 C 0.12 1.29 2.79 -68.86 -0.19 1.10 16 9 H 0.09 0.96 7.66 -51.93 -0.40 0.56 16 10 C -0.18 -1.65 9.14 37.16 0.34 -1.31 16 11 N -0.68 -8.42 5.70 -107.95 -0.62 -9.04 16 12 C 0.06 0.84 5.48 -3.83 -0.02 0.81 16 13 C -0.12 -1.97 5.47 -26.73 -0.15 -2.12 16 14 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 20 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.15 -1.68 9.61 -39.43 -0.38 -2.05 16 25 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 26 H 0.05 0.27 7.66 -51.93 -0.40 -0.12 16 27 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.12 0.91 6.30 -52.49 -0.33 0.58 16 29 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.12 1.22 7.24 -52.49 -0.38 0.84 16 31 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 32 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.34 3.88 7.81 -39.29 -0.31 3.57 16 35 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 36 H 0.03 0.38 7.44 -51.93 -0.39 -0.01 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.13 1.31 8.04 -52.49 -0.42 0.89 16 LS Contribution 360.08 15.07 5.43 5.43 Total: -1.00 -31.93 360.08 -9.27 -41.20 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.59 Total: -0.99 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -2.00 Total: -23.36 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.12 Total: -35.77 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: -0.20 Total: -3.50 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.93 -9.27 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385248172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.756 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds