Wall clock time and date at job start Mon Mar 30 2020 07:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 116.99896 * 2 1 4 4 C 1.38752 * 120.05602 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94624 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05451 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.11339 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.97682 * 179.70149 * 7 6 5 9 9 H 1.08998 * 109.47474 * 159.99864 * 8 7 6 10 10 C 1.53000 * 109.47100 * 280.00139 * 8 7 6 11 11 N 1.46906 * 109.46913 * 40.00014 * 8 7 6 12 12 C 1.46895 * 111.00122 * 155.00044 * 11 8 7 13 13 C 1.53000 * 109.47163 * 179.97438 * 12 11 8 14 14 C 1.53002 * 109.46870 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.46928 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47063 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99898 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99511 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00538 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99568 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46938 * 89.99658 * 20 18 16 22 22 H 1.48496 * 109.47010 * 210.00188 * 20 18 16 23 23 H 1.48497 * 109.46797 * 329.99856 * 20 18 16 24 24 C 1.38172 * 120.05216 * 359.97438 * 7 6 5 25 25 H 1.09000 * 109.47169 * 299.99969 * 1 2 3 26 26 H 1.09000 * 109.46699 * 60.00470 * 1 2 3 27 27 H 1.08999 * 109.46638 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.02776 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.97450 * 180.02562 * 5 4 3 30 30 H 1.07997 * 119.94796 * 179.97438 * 6 5 4 31 31 H 1.08998 * 109.47182 * 59.99546 * 10 8 7 32 32 H 1.08996 * 109.47059 * 179.97438 * 10 8 7 33 33 H 1.08997 * 109.47297 * 299.99590 * 10 8 7 34 34 H 1.00900 * 110.99633 * 278.95538 * 11 8 7 35 35 H 1.09003 * 109.47264 * 300.00091 * 12 11 8 36 36 H 1.09002 * 109.47026 * 59.99739 * 12 11 8 37 37 H 1.08995 * 109.47182 * 299.99974 * 13 12 11 38 38 H 1.08998 * 109.46943 * 60.00544 * 13 12 11 39 39 H 1.08995 * 109.47111 * 299.99913 * 14 13 12 40 40 H 1.08990 * 109.47314 * 60.00492 * 14 13 12 41 41 H 1.09003 * 109.47038 * 300.00078 * 15 14 13 42 42 H 1.09002 * 109.47372 * 59.99799 * 15 14 13 43 43 H 0.96995 * 120.00404 * 180.02562 * 19 18 16 44 44 H 1.08002 * 120.02512 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 4.0560 2.5172 -0.0021 8 6 5.5608 2.5982 -0.0095 9 1 5.9772 1.6544 0.3425 10 6 6.0498 2.8720 -1.4332 11 7 5.9969 3.6864 0.8758 12 6 7.3612 3.4509 1.3667 13 6 7.7795 4.6027 2.2828 14 6 9.2008 4.3578 2.7935 15 6 9.6189 5.5093 3.7101 16 6 11.0186 5.2677 4.2137 17 1 11.5560 4.3814 3.9107 18 6 11.6130 6.1784 5.0613 19 7 10.9584 7.2575 5.4307 20 14 13.3483 5.8793 5.6850 21 1 14.3237 6.4905 4.7467 22 1 13.5037 6.4915 7.0289 23 1 13.5969 4.4181 5.7750 24 6 3.4311 1.2849 -0.0016 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 0.2128 2.3203 -0.0005 29 1 1.3339 4.5114 -0.0011 30 1 3.7922 4.6381 -0.0024 31 1 5.6333 3.8158 -1.7852 32 1 7.1381 2.9311 -1.4384 33 1 5.7262 2.0647 -2.0901 34 1 5.9287 4.5796 0.4115 35 1 7.3905 2.5143 1.9235 36 1 8.0465 3.3924 0.5211 37 1 7.7504 5.5391 1.7256 38 1 7.0943 4.6616 3.1284 39 1 9.2303 3.4214 3.3506 40 1 9.8858 4.2992 1.9478 41 1 9.5892 6.4460 3.1534 42 1 8.9338 5.5676 4.5560 43 1 11.3767 7.8983 6.0267 44 1 4.0207 0.3800 -0.0024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385248172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:48 Heat of formation + Delta-G solvation = -56.891005 kcal Electronic energy + Delta-G solvation = -20367.112157 eV Core-core repulsion = 17282.859931 eV Total energy + Delta-G solvation = -3084.252226 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.11692 -39.26327 -37.64361 -36.14902 -34.45012 -32.49761 -31.42706 -30.06371 -28.97545 -28.08543 -26.17581 -24.29905 -23.60887 -22.74489 -21.87447 -21.21306 -18.73195 -18.37668 -17.21484 -16.96526 -16.69767 -16.60766 -16.50572 -16.06288 -15.65766 -15.14797 -14.57852 -14.49780 -14.41354 -14.04474 -13.95628 -13.62896 -13.30140 -13.22731 -13.10422 -12.83766 -12.81226 -12.40407 -12.26854 -12.20345 -12.12531 -12.06891 -11.86954 -11.61090 -11.35925 -11.28940 -10.97132 -10.54717 -9.78190 -9.32328 -9.09835 -8.19169 -6.30555 0.39579 0.55109 1.39690 1.41541 1.52710 2.37364 2.41418 2.81203 3.13349 3.25809 3.80249 3.91840 4.06586 4.17396 4.20289 4.23811 4.32833 4.37011 4.40204 4.47218 4.55390 4.59779 4.63705 4.66110 4.74127 4.82552 4.90745 4.93244 4.98460 5.09925 5.20778 5.27413 5.29242 5.37218 5.38469 5.55352 5.56536 5.66448 5.79782 5.87235 5.88199 6.13303 6.26900 6.47816 6.49476 6.87134 7.38584 8.92660 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035957 B = 0.002290 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.518767 B =12225.411829 C =12274.431210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.112 3.888 4 C -0.216 4.216 5 C -0.085 4.085 6 C -0.146 4.146 7 C -0.033 4.033 8 C 0.123 3.877 9 H 0.084 0.916 10 C -0.171 4.171 11 N -0.688 5.688 12 C 0.072 3.928 13 C -0.105 4.105 14 C -0.097 4.097 15 C 0.022 3.978 16 C -0.544 4.544 17 H 0.060 0.940 18 C -0.004 4.004 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.263 1.263 24 C -0.167 4.167 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.129 0.871 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.346 0.654 35 H 0.068 0.932 36 H 0.039 0.961 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.052 0.948 41 H -0.010 1.010 42 H -0.012 1.012 43 H 0.263 0.737 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.494 -12.258 -15.891 29.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.067 3.933 4 C -0.235 4.235 5 C -0.103 4.103 6 C -0.165 4.165 7 C -0.034 4.034 8 C 0.013 3.987 9 H 0.102 0.898 10 C -0.230 4.230 11 N -0.319 5.319 12 C -0.056 4.056 13 C -0.143 4.143 14 C -0.135 4.135 15 C -0.015 4.015 16 C -0.582 4.582 17 H 0.078 0.922 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.187 1.187 24 C -0.186 4.186 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.135 0.865 28 H 0.164 0.836 29 H 0.163 0.837 30 H 0.147 0.853 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.165 0.835 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.009 0.991 42 H 0.006 0.994 43 H 0.072 0.928 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.700 -12.579 -15.229 29.344 hybrid contribution 1.129 0.545 -0.107 1.258 sum -20.571 -12.034 -15.335 28.340 Atomic orbital electron populations 1.23315 0.76558 1.05438 1.02176 1.86033 1.23411 1.27057 1.88880 1.19123 0.92373 0.84798 0.97017 1.21459 1.00956 0.92042 1.09048 1.21238 0.94591 0.97834 0.96661 1.21026 0.93972 0.98421 1.03076 1.19644 0.95142 0.92350 0.96248 1.20432 0.90540 0.95684 0.92026 0.89768 1.22407 1.01469 1.02940 0.96157 1.60514 1.24462 1.05234 1.41690 1.21867 0.88112 0.98492 0.97178 1.21450 0.95841 0.98025 0.98944 1.21397 0.95424 0.98336 0.98358 1.19029 0.94790 0.93846 0.93805 1.21749 1.01211 1.06922 1.28322 0.92188 1.26035 1.02683 0.94878 0.96589 1.70100 1.39415 1.12062 1.35882 0.85427 0.79110 0.78781 0.77606 1.19654 1.20729 1.18738 1.20366 0.91903 0.98304 1.08022 0.91974 0.91614 0.86484 0.83630 0.83726 0.85328 0.91686 0.91994 0.91231 0.83459 0.91346 0.94320 0.92639 0.92888 0.93245 0.92950 0.99128 0.99384 0.92792 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.70 10.50 -92.40 -0.97 -7.67 16 3 C 0.11 2.37 6.69 22.51 0.15 2.52 16 4 C -0.22 -3.85 9.04 22.37 0.20 -3.65 16 5 C -0.09 -1.52 10.04 22.25 0.22 -1.29 16 6 C -0.15 -2.97 9.32 22.28 0.21 -2.76 16 7 C -0.03 -0.71 4.95 -19.88 -0.10 -0.81 16 8 C 0.12 2.54 2.79 44.17 0.12 2.66 16 9 H 0.08 1.78 7.66 -2.39 -0.02 1.76 16 10 C -0.17 -2.94 9.14 71.98 0.66 -2.28 16 11 N -0.69 -16.31 5.70 -495.45 -2.83 -19.13 16 12 C 0.07 1.94 5.48 86.30 0.47 2.42 16 13 C -0.10 -3.56 5.47 30.59 0.17 -3.39 16 14 C -0.10 -4.04 5.15 30.60 0.16 -3.89 16 15 C 0.02 1.22 4.97 29.85 0.15 1.37 16 16 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 17 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 18 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 19 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 20 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 24 C -0.17 -3.71 9.61 22.37 0.21 -3.49 16 25 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 26 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 27 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.15 1.82 6.30 -2.91 -0.02 1.80 16 29 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.13 2.39 7.24 -2.91 -0.02 2.37 16 31 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 32 H 0.06 1.07 7.45 -2.39 -0.02 1.05 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.35 7.50 7.81 -89.69 -0.70 6.80 16 35 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 36 H 0.04 0.97 7.44 -2.39 -0.02 0.95 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 42 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 44 H 0.13 2.67 8.04 -2.91 -0.02 2.65 16 Total: -1.00 -68.69 360.08 3.21 -65.48 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.26 Total: 14.80 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 4.44 Total: -42.67 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -2.54 Total: -77.02 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.97 Total: -7.67 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -68.69 3.21 -65.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385248172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.592 kcal (2) G-P(sol) polarization free energy of solvation -68.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds