Wall clock time and date at job start Mon Mar 30 2020 07:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99873 * 2 1 4 4 C 1.53004 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46912 * 304.99774 * 4 3 2 6 6 C 1.53004 * 109.47058 * 64.99585 * 4 3 2 7 7 C 1.52993 * 109.47169 * 184.99581 * 4 3 2 8 8 H 1.09000 * 109.47361 * 299.99918 * 7 4 3 9 9 C 1.53004 * 109.47128 * 60.00047 * 7 4 3 10 10 N 1.46907 * 109.47313 * 179.97438 * 7 4 3 11 11 C 1.46896 * 111.00146 * 154.99880 * 10 7 4 12 12 C 1.50693 * 109.47091 * 180.02562 * 11 10 7 13 13 C 1.38633 * 119.75166 * 269.72685 * 12 11 10 14 14 C 1.37615 * 120.24869 * 179.72103 * 13 12 11 15 15 C 1.40713 * 119.74749 * 0.57080 * 14 13 12 16 16 C 1.41397 * 120.24607 * 179.67856 * 15 14 13 17 17 H 1.07996 * 119.99527 * 155.31287 * 16 15 14 18 18 C 1.39949 * 120.00195 * 335.31984 * 16 15 14 19 19 N 1.30825 * 119.99562 * 342.22909 * 18 16 15 20 20 Si 1.86792 * 120.00049 * 162.23220 * 18 16 15 21 21 H 1.48490 * 109.47455 * 94.66008 * 20 18 16 22 22 H 1.48507 * 109.47069 * 214.66183 * 20 18 16 23 23 H 1.48500 * 109.47236 * 334.65999 * 20 18 16 24 24 C 1.40717 * 119.50851 * 359.70592 * 15 14 13 25 25 C 1.37618 * 119.74703 * 359.97438 * 24 15 14 26 26 H 1.08992 * 109.46683 * 60.00455 * 1 2 3 27 27 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46984 * 300.00346 * 1 2 3 29 29 H 1.09001 * 109.47737 * 59.99582 * 3 2 1 30 30 H 1.09000 * 109.47160 * 299.99455 * 3 2 1 31 31 H 1.09002 * 109.46859 * 59.99829 * 6 4 3 32 32 H 1.08996 * 109.47429 * 180.02562 * 6 4 3 33 33 H 1.08999 * 109.46947 * 300.00454 * 6 4 3 34 34 H 1.09002 * 109.46859 * 60.00192 * 9 7 4 35 35 H 1.09005 * 109.46741 * 179.97438 * 9 7 4 36 36 H 1.08997 * 109.46808 * 299.99584 * 9 7 4 37 37 H 1.00892 * 111.00017 * 278.95994 * 10 7 4 38 38 H 1.08999 * 109.47279 * 300.00408 * 11 10 7 39 39 H 1.09004 * 109.47190 * 60.00292 * 11 10 7 40 40 H 1.08005 * 119.87714 * 359.97438 * 13 12 11 41 41 H 1.08006 * 120.12779 * 180.28198 * 14 13 12 42 42 H 0.97004 * 119.99503 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.12498 * 179.97438 * 24 15 14 44 44 H 1.07994 * 119.87465 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8508 0.5686 0.8427 6 6 3.9963 0.5363 -1.3064 7 6 4.1573 2.5769 0.1263 8 1 3.8420 3.1930 -0.7158 9 6 3.6965 3.2252 1.4333 10 7 5.6218 2.4609 0.1275 11 6 6.2487 3.7038 -0.3416 12 6 7.7474 3.5469 -0.3271 13 6 8.4642 3.8914 0.8084 14 6 9.8325 3.7469 0.8348 15 6 10.5051 3.2587 -0.3007 16 6 11.9114 3.1125 -0.2875 17 1 12.3865 2.4017 -0.9473 18 6 12.6875 3.8887 0.5806 19 7 12.1843 4.9702 1.1180 20 14 14.4419 3.3807 0.9720 21 1 15.3771 4.0883 0.0611 22 1 14.7578 3.7356 2.3790 23 1 14.5856 1.9143 0.7873 24 6 9.7678 2.9178 -1.4498 25 6 8.3994 3.0642 -1.4514 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8465 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.6809 1.1524 -2.1485 32 1 5.0828 0.4498 -1.3058 33 1 3.5532 -0.4555 -1.3959 34 1 4.0119 2.6091 2.2754 35 1 4.1399 4.2170 1.5229 36 1 2.6099 3.3113 1.4328 37 1 5.9635 2.2062 1.0420 38 1 5.9159 3.9178 -1.3572 39 1 5.9627 4.5254 0.3151 40 1 7.9464 4.2707 1.6770 41 1 10.3886 4.0115 1.7221 42 1 12.7224 5.5084 1.7194 43 1 10.2738 2.5426 -2.3269 44 1 7.8316 2.8035 -2.3322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399248313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:15 Heat of formation + Delta-G solvation = -47.006310 kcal Electronic energy + Delta-G solvation = -21014.548243 eV Core-core repulsion = 17930.724649 eV Total energy + Delta-G solvation = -3083.823594 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -38.80503 -37.76680 -36.76191 -34.08444 -32.81237 -30.40803 -29.27607 -28.84551 -27.44334 -26.08845 -25.28224 -23.48786 -22.20606 -20.97329 -20.17649 -19.59891 -17.26374 -16.69520 -16.11801 -15.59141 -15.33625 -14.89552 -14.54546 -14.12540 -13.92817 -13.78178 -13.40398 -13.29938 -12.87812 -12.49908 -12.29541 -12.24467 -11.90950 -11.71998 -11.68170 -11.44866 -11.36653 -11.04554 -10.98653 -10.85108 -10.67053 -10.56006 -10.46865 -10.25770 -9.78051 -9.52579 -9.36790 -9.10232 -7.99003 -7.41529 -7.26219 -6.74660 -4.32441 2.75863 3.07641 3.11034 3.12611 3.19862 3.58110 3.94517 4.49905 4.73946 4.80274 4.97456 5.03074 5.10317 5.20201 5.21812 5.32591 5.37404 5.43096 5.63311 5.72247 5.78547 5.81328 5.86727 5.94855 6.01599 6.16189 6.27467 6.33071 6.38463 6.41901 6.45642 6.64103 6.97479 7.00690 7.09940 7.30680 7.40854 7.45973 7.64707 7.78509 7.92947 8.08554 8.17633 8.33614 8.66863 8.92385 9.00907 10.20042 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.040272 B = 0.002855 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.104809 B = 9804.748117 C =10011.689985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.063 3.937 4 C -0.077 4.077 5 H 0.076 0.924 6 C -0.133 4.133 7 C 0.088 3.912 8 H 0.074 0.926 9 C -0.187 4.187 10 N -0.675 5.675 11 C 0.126 3.874 12 C -0.213 4.213 13 C -0.095 4.095 14 C -0.166 4.166 15 C 0.112 3.888 16 C -0.463 4.463 17 H 0.077 0.923 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.228 4.228 25 C -0.068 4.068 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.341 0.659 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.279 0.721 43 H 0.090 0.910 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.906 -3.755 0.459 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.014 4.014 4 C -0.096 4.096 5 H 0.094 0.906 6 C -0.190 4.190 7 C -0.022 4.022 8 H 0.092 0.908 9 C -0.246 4.246 10 N -0.305 5.305 11 C -0.002 4.002 12 C -0.214 4.214 13 C -0.114 4.114 14 C -0.186 4.186 15 C 0.110 3.890 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.142 4.142 19 N -0.420 5.420 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.248 4.248 25 C -0.087 4.087 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.160 0.840 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.100 0.900 41 H 0.134 0.866 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.697 -4.009 -0.017 17.172 hybrid contribution 0.408 0.824 1.042 1.390 sum -16.289 -3.185 1.025 16.629 Atomic orbital electron populations 1.22711 0.81521 1.02531 0.99739 1.87889 1.19194 1.28302 1.95350 1.22734 0.94499 0.84307 0.99869 1.21055 0.91264 0.96892 1.00372 0.90565 1.21625 1.02759 0.99407 0.95231 1.21485 0.89509 0.94650 0.96606 0.90802 1.22623 1.01436 1.01409 0.99118 1.60641 1.02628 1.34644 1.32602 1.20561 0.92469 0.88728 0.98405 1.18886 0.92278 1.13726 0.96525 1.20512 0.94646 1.00426 0.95810 1.21265 0.92376 1.05831 0.99094 1.17623 0.93122 0.88252 0.90034 1.19594 0.91649 1.19328 1.18688 0.90503 1.25909 1.00784 0.93406 0.94065 1.69836 1.38313 1.10177 1.23659 0.86338 0.81861 0.80383 0.78372 1.19618 1.20081 1.18420 1.20981 0.93548 1.12309 0.97963 1.20327 0.94021 0.98255 0.96093 0.94266 0.89804 0.94336 0.93271 0.93552 0.93800 0.90762 0.93141 0.92321 0.92497 0.92441 0.84034 0.92173 0.96317 0.90002 0.86642 0.90975 0.89147 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.46 10.24 -35.23 -0.36 -4.83 16 3 C 0.06 0.66 5.10 37.16 0.19 0.85 16 4 C -0.08 -0.91 2.40 -90.62 -0.22 -1.13 16 5 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 6 C -0.13 -1.70 8.93 37.16 0.33 -1.37 16 7 C 0.09 1.08 2.17 -67.71 -0.15 0.93 16 8 H 0.07 0.91 7.80 -51.93 -0.41 0.51 16 9 C -0.19 -2.03 8.82 37.16 0.33 -1.70 16 10 N -0.67 -10.23 5.47 -107.99 -0.59 -10.82 16 11 C 0.13 2.16 5.60 -4.98 -0.03 2.13 16 12 C -0.21 -4.54 5.41 -104.33 -0.56 -5.10 16 13 C -0.09 -2.18 9.67 -39.66 -0.38 -2.57 16 14 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 15 C 0.11 3.01 5.57 -106.82 -0.60 2.42 16 16 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16 17 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 18 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 19 N -0.79 -20.65 10.97 55.55 0.61 -20.04 16 20 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 C -0.23 -5.68 9.80 -38.87 -0.38 -6.06 16 25 C -0.07 -1.54 9.67 -39.66 -0.38 -1.92 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.46 6.17 -51.93 -0.32 0.14 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.08 7.61 -51.93 -0.39 0.68 16 33 H 0.05 0.64 7.82 -51.93 -0.41 0.23 16 34 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 35 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 36 H 0.06 0.53 6.32 -51.93 -0.33 0.20 16 37 H 0.34 5.31 8.46 -39.30 -0.33 4.97 16 38 H 0.06 1.01 7.99 -51.93 -0.42 0.59 16 39 H 0.02 0.31 7.37 -51.93 -0.38 -0.07 16 40 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.12 3.10 6.18 -52.48 -0.32 2.78 16 42 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 43 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 44 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 355.17 15.07 5.35 5.35 Total: -1.00 -27.36 355.17 -9.00 -36.36 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.47 Total: 7.95 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: -1.51 Total: -27.72 kcal Atomic # 7 Polarization: -30.88 SS G_CDS: 0.02 Total: -30.86 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.36 Total: -4.83 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.36 -9.00 -36.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399248313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.647 kcal (2) G-P(sol) polarization free energy of solvation -27.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds