Wall clock time and date at job start Mon Mar 30 2020 07:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99873 * 2 1 4 4 C 1.53004 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46912 * 304.99774 * 4 3 2 6 6 C 1.53004 * 109.47058 * 64.99585 * 4 3 2 7 7 C 1.52993 * 109.47169 * 184.99581 * 4 3 2 8 8 H 1.09000 * 109.47361 * 299.99918 * 7 4 3 9 9 C 1.53004 * 109.47128 * 60.00047 * 7 4 3 10 10 N 1.46907 * 109.47313 * 179.97438 * 7 4 3 11 11 C 1.46896 * 111.00146 * 154.99880 * 10 7 4 12 12 C 1.50693 * 109.47091 * 180.02562 * 11 10 7 13 13 C 1.38633 * 119.75166 * 269.72685 * 12 11 10 14 14 C 1.37615 * 120.24869 * 179.72103 * 13 12 11 15 15 C 1.40713 * 119.74749 * 0.57080 * 14 13 12 16 16 C 1.41397 * 120.24607 * 179.67856 * 15 14 13 17 17 H 1.07996 * 119.99527 * 155.31287 * 16 15 14 18 18 C 1.39949 * 120.00195 * 335.31984 * 16 15 14 19 19 N 1.30825 * 119.99562 * 342.22909 * 18 16 15 20 20 Si 1.86792 * 120.00049 * 162.23220 * 18 16 15 21 21 H 1.48490 * 109.47455 * 94.66008 * 20 18 16 22 22 H 1.48507 * 109.47069 * 214.66183 * 20 18 16 23 23 H 1.48500 * 109.47236 * 334.65999 * 20 18 16 24 24 C 1.40717 * 119.50851 * 359.70592 * 15 14 13 25 25 C 1.37618 * 119.74703 * 359.97438 * 24 15 14 26 26 H 1.08992 * 109.46683 * 60.00455 * 1 2 3 27 27 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46984 * 300.00346 * 1 2 3 29 29 H 1.09001 * 109.47737 * 59.99582 * 3 2 1 30 30 H 1.09000 * 109.47160 * 299.99455 * 3 2 1 31 31 H 1.09002 * 109.46859 * 59.99829 * 6 4 3 32 32 H 1.08996 * 109.47429 * 180.02562 * 6 4 3 33 33 H 1.08999 * 109.46947 * 300.00454 * 6 4 3 34 34 H 1.09002 * 109.46859 * 60.00192 * 9 7 4 35 35 H 1.09005 * 109.46741 * 179.97438 * 9 7 4 36 36 H 1.08997 * 109.46808 * 299.99584 * 9 7 4 37 37 H 1.00892 * 111.00017 * 278.95994 * 10 7 4 38 38 H 1.08999 * 109.47279 * 300.00408 * 11 10 7 39 39 H 1.09004 * 109.47190 * 60.00292 * 11 10 7 40 40 H 1.08005 * 119.87714 * 359.97438 * 13 12 11 41 41 H 1.08006 * 120.12779 * 180.28198 * 14 13 12 42 42 H 0.97004 * 119.99503 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.12498 * 179.97438 * 24 15 14 44 44 H 1.07994 * 119.87465 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8508 0.5686 0.8427 6 6 3.9963 0.5363 -1.3064 7 6 4.1573 2.5769 0.1263 8 1 3.8420 3.1930 -0.7158 9 6 3.6965 3.2252 1.4333 10 7 5.6218 2.4609 0.1275 11 6 6.2487 3.7038 -0.3416 12 6 7.7474 3.5469 -0.3271 13 6 8.4642 3.8914 0.8084 14 6 9.8325 3.7469 0.8348 15 6 10.5051 3.2587 -0.3007 16 6 11.9114 3.1125 -0.2875 17 1 12.3865 2.4017 -0.9473 18 6 12.6875 3.8887 0.5806 19 7 12.1843 4.9702 1.1180 20 14 14.4419 3.3807 0.9720 21 1 15.3771 4.0883 0.0611 22 1 14.7578 3.7356 2.3790 23 1 14.5856 1.9143 0.7873 24 6 9.7678 2.9178 -1.4498 25 6 8.3994 3.0642 -1.4514 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8465 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.6809 1.1524 -2.1485 32 1 5.0828 0.4498 -1.3058 33 1 3.5532 -0.4555 -1.3959 34 1 4.0119 2.6091 2.2754 35 1 4.1399 4.2170 1.5229 36 1 2.6099 3.3113 1.4328 37 1 5.9635 2.2062 1.0420 38 1 5.9159 3.9178 -1.3572 39 1 5.9627 4.5254 0.3151 40 1 7.9464 4.2707 1.6770 41 1 10.3886 4.0115 1.7221 42 1 12.7224 5.5084 1.7194 43 1 10.2738 2.5426 -2.3269 44 1 7.8316 2.8035 -2.3322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399248313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:14 Heat of formation + Delta-G solvation = -61.820402 kcal Electronic energy + Delta-G solvation = -21015.190630 eV Core-core repulsion = 17930.724649 eV Total energy + Delta-G solvation = -3084.465981 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.88720 -39.28146 -37.88411 -35.78583 -34.19146 -31.89536 -31.12485 -30.15005 -28.32091 -27.55656 -26.13669 -24.98241 -23.34311 -22.85236 -21.68415 -20.84669 -19.19455 -17.52851 -17.21928 -16.90997 -16.49374 -16.17402 -15.92035 -15.63330 -15.26767 -14.91796 -14.72297 -14.58723 -14.17039 -13.86207 -13.77382 -13.52801 -13.26933 -13.09531 -12.91166 -12.75359 -12.61435 -12.38029 -12.37542 -12.30074 -12.08064 -11.79044 -11.58815 -11.48164 -11.26756 -11.21823 -10.98007 -10.52536 -9.36539 -9.22512 -9.07164 -8.62576 -6.31134 0.96974 1.19018 1.37770 1.48611 1.54365 2.21403 2.67670 2.84515 3.53043 3.81873 3.89610 4.07922 4.20653 4.27374 4.36145 4.42510 4.44414 4.49508 4.56910 4.58475 4.64387 4.68147 4.75476 4.84328 4.87546 4.93850 4.95470 5.02874 5.07896 5.18407 5.22219 5.31265 5.40403 5.41505 5.50975 5.58295 5.74376 5.99236 6.13179 6.24553 6.27364 6.34480 6.43187 6.59165 6.73510 6.96901 7.07306 8.34616 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.040272 B = 0.002855 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.104809 B = 9804.748117 C =10011.689985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.066 3.934 4 C -0.073 4.073 5 H 0.064 0.936 6 C -0.128 4.128 7 C 0.092 3.908 8 H 0.080 0.920 9 C -0.182 4.182 10 N -0.682 5.682 11 C 0.135 3.865 12 C -0.197 4.197 13 C -0.097 4.097 14 C -0.190 4.190 15 C 0.078 3.922 16 C -0.504 4.504 17 H 0.072 0.928 18 C 0.035 3.965 19 N -0.827 5.827 20 Si 0.981 3.019 21 H -0.262 1.262 22 H -0.265 1.265 23 H -0.260 1.260 24 C -0.246 4.246 25 C -0.072 4.072 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.339 0.661 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.287 0.713 43 H 0.092 0.908 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.788 -3.643 0.646 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C -0.010 4.010 4 C -0.092 4.092 5 H 0.083 0.917 6 C -0.185 4.185 7 C -0.018 4.018 8 H 0.098 0.902 9 C -0.241 4.241 10 N -0.312 5.312 11 C 0.007 3.993 12 C -0.198 4.198 13 C -0.116 4.116 14 C -0.210 4.210 15 C 0.076 3.924 16 C -0.533 4.533 17 H 0.090 0.910 18 C -0.180 4.180 19 N -0.453 5.453 20 Si 0.801 3.199 21 H -0.187 1.187 22 H -0.189 1.189 23 H -0.184 1.184 24 C -0.265 4.265 25 C -0.091 4.091 26 H 0.067 0.933 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.157 0.843 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -18.609 -3.897 0.163 19.013 hybrid contribution 0.783 0.763 0.937 1.440 sum -17.826 -3.134 1.100 18.132 Atomic orbital electron populations 1.22901 0.79776 1.03625 1.00754 1.87848 1.21175 1.28861 1.95562 1.22684 0.93092 0.84327 1.00939 1.20986 0.92687 0.96283 0.99263 0.91713 1.21551 1.01262 0.99594 0.96106 1.21490 0.87424 0.95104 0.97732 0.90226 1.22556 1.02715 1.00800 0.97986 1.60536 1.04598 1.33494 1.32605 1.20444 0.89403 0.89973 0.99518 1.19342 0.94815 1.10573 0.95095 1.20770 0.93715 0.99863 0.97257 1.21243 0.93715 1.07512 0.98521 1.17967 0.93839 0.89544 0.91064 1.19820 0.92329 1.20631 1.20551 0.90995 1.26743 1.05064 0.92868 0.93304 1.69883 1.40186 1.10994 1.24244 0.85223 0.76296 0.79779 0.78583 1.18702 1.18943 1.18418 1.21181 0.94822 1.12868 0.97663 1.20635 0.93312 0.97676 0.97455 0.93299 0.88826 0.93210 0.91946 0.92636 0.93246 0.92841 0.93407 0.92471 0.92925 0.90439 0.84330 0.91140 0.95208 0.87823 0.88422 0.90233 0.88959 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -8.67 10.24 -148.98 -1.53 -10.19 16 3 C 0.07 1.21 5.10 71.98 0.37 1.58 16 4 C -0.07 -1.59 2.40 -10.79 -0.03 -1.62 16 5 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 6 C -0.13 -3.10 8.93 71.98 0.64 -2.45 16 7 C 0.09 2.02 2.17 44.91 0.10 2.12 16 8 H 0.08 1.70 7.80 -2.39 -0.02 1.68 16 9 C -0.18 -3.41 8.82 71.98 0.63 -2.77 16 10 N -0.68 -19.28 5.47 -495.58 -2.71 -21.99 16 11 C 0.13 4.28 5.60 85.56 0.48 4.76 16 12 C -0.20 -8.16 5.41 -19.68 -0.11 -8.27 16 13 C -0.10 -4.45 9.67 22.22 0.21 -4.23 16 14 C -0.19 -10.18 8.70 22.73 0.20 -9.98 16 15 C 0.08 4.35 5.57 -21.29 -0.12 4.23 16 16 C -0.50 -28.08 9.05 23.46 0.21 -27.87 16 17 H 0.07 3.90 7.91 -2.91 -0.02 3.87 16 18 C 0.03 1.79 5.14 85.26 0.44 2.23 16 19 N -0.83 -44.17 10.97 21.83 0.24 -43.93 16 20 Si 0.98 39.14 29.59 68.60 2.03 41.17 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 22 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 24 C -0.25 -12.47 9.80 22.73 0.22 -12.25 16 25 C -0.07 -3.20 9.67 22.22 0.21 -2.99 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.97 6.17 -2.39 -0.01 0.95 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.51 7.61 -2.39 -0.02 1.49 16 33 H 0.05 1.16 7.82 -2.39 -0.02 1.14 16 34 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 35 H 0.05 1.05 7.45 -2.38 -0.02 1.03 16 36 H 0.08 1.15 6.32 -2.39 -0.02 1.14 16 37 H 0.34 9.96 8.46 -89.70 -0.76 9.21 16 38 H 0.07 2.13 7.99 -2.39 -0.02 2.11 16 39 H 0.03 0.90 7.37 -2.39 -0.02 0.88 16 40 H 0.10 4.20 8.06 -2.91 -0.02 4.18 16 41 H 0.10 5.48 6.18 -2.91 -0.02 5.46 16 42 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 43 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 44 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -60.33 355.17 2.96 -57.37 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.21 Total: 33.50 kcal Atomic # 6 Polarization: -60.64 SS G_CDS: 4.72 Total: -55.92 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -2.47 Total: -65.92 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -1.53 Total: -10.19 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -60.33 2.96 -57.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399248313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.448 kcal (2) G-P(sol) polarization free energy of solvation -60.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds