Wall clock time and date at job start Mon Mar 30 2020 08:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38345 * 120.45092 * 2 1 4 4 C 1.38840 * 118.50524 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.33476 * 180.25146 * 4 3 2 6 6 N 1.46900 * 109.47461 * 269.72325 * 5 4 3 7 7 C 1.46895 * 111.00309 * 180.02562 * 6 5 4 8 8 C 1.52993 * 109.47272 * 154.99918 * 7 6 5 9 9 C 1.53002 * 109.46591 * 275.00032 * 7 6 5 10 10 C 1.38063 * 119.33000 * 359.97438 * 4 3 2 11 11 N 1.31945 * 120.85512 * 359.97438 * 10 4 3 12 12 C 1.32427 * 121.62330 * 0.02771 * 11 10 4 13 13 N 1.39001 * 119.70415 * 179.97438 * 12 11 10 14 14 C 1.46896 * 111.00060 * 65.14629 * 13 12 11 15 15 C 1.46893 * 111.00035 * 301.18654 * 13 12 11 16 16 C 1.50711 * 109.47209 * 190.00086 * 15 13 12 17 17 H 1.07997 * 119.99423 * 0.02562 * 16 15 13 18 18 C 1.37873 * 120.00055 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00016 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99812 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47228 * 60.00143 * 20 18 16 22 22 H 1.48503 * 109.47225 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47517 * 300.00237 * 20 18 16 24 24 H 1.09005 * 109.46685 * 270.02025 * 1 2 3 25 25 H 1.08993 * 109.47648 * 30.01991 * 1 2 3 26 26 H 1.08998 * 109.47232 * 150.02434 * 1 2 3 27 27 H 1.08000 * 120.74510 * 0.04212 * 3 2 1 28 28 H 1.09002 * 109.47081 * 29.72086 * 5 4 3 29 29 H 1.08999 * 109.47079 * 149.71701 * 5 4 3 30 30 H 1.00904 * 110.99640 * 303.95445 * 6 5 4 31 31 H 1.08999 * 109.47282 * 34.99160 * 7 6 5 32 32 H 1.09001 * 109.47507 * 59.99960 * 8 7 6 33 33 H 1.08999 * 109.46912 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.47095 * 299.99816 * 8 7 6 35 35 H 1.09001 * 109.47069 * 299.99355 * 9 7 6 36 36 H 1.08998 * 109.47404 * 60.00204 * 9 7 6 37 37 H 1.09005 * 109.47193 * 179.97438 * 9 7 6 38 38 H 1.08000 * 119.57413 * 180.02562 * 10 4 3 39 39 H 1.08999 * 109.47257 * 54.23223 * 14 13 12 40 40 H 1.09002 * 109.47720 * 174.23763 * 14 13 12 41 41 H 1.09007 * 109.47033 * 294.23450 * 14 13 12 42 42 H 1.08997 * 109.47247 * 310.00404 * 15 13 12 43 43 H 1.09004 * 109.47057 * 70.00665 * 15 13 12 44 44 H 0.97006 * 119.99983 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2081 1.1926 0.0000 4 6 3.5957 1.1455 -0.0005 5 6 4.4005 2.4196 0.0051 6 7 4.6674 2.8364 -1.3780 7 6 5.4523 4.0777 -1.4116 8 6 6.2263 4.1561 -2.7290 9 6 4.5114 5.2791 -1.3005 10 6 4.2307 -0.0804 -0.0005 11 7 3.5362 -1.2023 0.0005 12 6 2.2119 -1.1991 0.0010 13 7 1.5202 -2.4048 0.0016 14 6 1.7587 -3.1480 1.2460 15 6 1.8738 -3.2151 -1.1716 16 6 0.9365 -4.3910 -1.2709 17 1 0.1559 -4.5229 -0.5363 18 6 1.0754 -5.2984 -2.2997 19 7 2.0262 -5.1380 -3.1939 20 14 -0.0860 -6.7562 -2.4224 21 1 -1.4813 -6.2673 -2.5613 22 1 0.2714 -7.5753 -3.6084 23 1 0.0282 -7.5848 -1.1953 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6877 2.1390 0.0007 28 1 3.8401 3.2010 0.5184 29 1 5.3449 2.2504 0.5224 30 1 5.1295 2.1027 -1.8940 31 1 6.1534 4.0869 -0.5771 32 1 5.5252 4.1469 -3.5635 33 1 6.8083 5.0773 -2.7541 34 1 6.8965 3.3002 -2.8081 35 1 3.8103 5.2699 -2.1350 36 1 3.9601 5.2232 -0.3619 37 1 5.0938 6.2002 -1.3250 38 1 5.3099 -0.1217 -0.0005 39 1 1.5192 -2.5138 2.0995 40 1 1.1279 -4.0367 1.2652 41 1 2.8063 -3.4450 1.2968 42 1 1.7901 -2.6066 -2.0720 43 1 2.8979 -3.5744 -1.0697 44 1 2.1238 -5.7762 -3.9180 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723019363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:11:45 Heat of formation + Delta-G solvation = 13.776613 kcal Electronic energy + Delta-G solvation = -21415.896200 eV Core-core repulsion = 18367.001103 eV Total energy + Delta-G solvation = -3048.895097 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.55879 -38.64562 -37.54439 -34.83216 -34.47124 -33.68237 -30.74671 -29.33590 -28.16882 -28.09475 -27.09588 -25.49178 -24.42203 -22.65303 -21.53445 -21.39657 -18.71064 -17.93180 -17.64466 -16.77635 -16.68345 -16.35050 -15.81590 -15.61092 -15.07601 -14.94035 -14.68965 -14.44908 -14.00173 -13.90909 -13.62979 -13.51522 -13.37160 -13.22603 -13.08452 -12.91250 -12.85970 -12.75697 -12.57219 -12.41675 -12.29931 -12.04729 -11.97747 -11.69182 -11.45492 -10.64382 -10.49284 -10.42486 -9.58787 -9.37294 -9.31133 -8.21646 -6.33858 0.11535 0.41336 1.41290 1.45819 1.53573 2.39436 2.72424 3.05200 3.12585 3.34973 3.61792 3.79426 3.99346 4.07651 4.09339 4.21265 4.27630 4.41467 4.47503 4.54641 4.66077 4.67316 4.70380 4.84433 4.88246 4.92730 4.96574 4.99311 5.01362 5.05606 5.14647 5.17515 5.27865 5.29670 5.34167 5.46365 5.47868 5.61294 5.77738 6.02344 6.08243 6.13017 6.39701 6.71096 6.80428 7.11021 7.35921 8.90119 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.003598 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.143696 B = 7780.482031 C = 8245.365271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.120 4.120 3 C -0.052 4.052 4 C -0.135 4.135 5 C 0.117 3.883 6 N -0.694 5.694 7 C 0.077 3.923 8 C -0.153 4.153 9 C -0.138 4.138 10 C 0.092 3.908 11 N -0.545 5.545 12 C 0.269 3.731 13 N -0.491 5.491 14 C 0.053 3.947 15 C 0.229 3.771 16 C -0.527 4.527 17 H 0.071 0.929 18 C 0.000 4.000 19 N -0.936 5.936 20 Si 0.977 3.023 21 H -0.264 1.264 22 H -0.284 1.284 23 H -0.265 1.265 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.164 0.836 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.340 0.660 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.161 0.839 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.010 0.990 42 H -0.013 1.013 43 H -0.034 1.034 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 20.522 7.170 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.079 4.079 4 C -0.137 4.137 5 C -0.012 4.012 6 N -0.326 5.326 7 C -0.032 4.032 8 C -0.211 4.211 9 C -0.196 4.196 10 C -0.067 4.067 11 N -0.256 5.256 12 C 0.041 3.959 13 N -0.213 5.213 14 C -0.094 4.094 15 C 0.104 3.896 16 C -0.565 4.565 17 H 0.089 0.911 18 C -0.198 4.198 19 N -0.577 5.577 20 Si 0.800 3.200 21 H -0.189 1.189 22 H -0.209 1.209 23 H -0.190 1.190 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.075 0.925 27 H 0.182 0.818 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.159 0.841 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.178 0.822 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.029 0.971 42 H 0.005 0.995 43 H -0.016 1.016 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.888 20.062 6.923 21.576 hybrid contribution 1.156 -1.004 -0.252 1.552 sum 5.044 19.057 6.671 20.812 Atomic orbital electron populations 1.20566 0.88596 1.02959 1.02979 1.20898 0.98978 0.91728 1.00725 1.21573 0.93382 0.97877 0.95044 1.20889 0.94851 0.96026 1.01925 1.20747 0.97759 0.92374 0.90282 1.60597 1.52123 1.06819 1.13068 1.21591 0.93684 0.90103 0.97847 1.21961 0.99804 1.02566 0.96736 1.21789 0.99366 0.96537 1.01882 1.22745 1.00334 0.87164 0.96465 1.67787 1.10093 1.33753 1.13997 1.20324 0.86946 0.92749 0.95884 1.60318 1.52882 1.03527 1.04613 1.22104 0.98834 0.98377 0.90069 1.19191 0.93434 0.90971 0.86040 1.21428 1.15435 1.08116 1.11559 0.91062 1.26011 0.97404 1.01441 0.94929 1.70127 1.34109 1.38197 1.15221 0.85330 0.78869 0.78005 0.77765 1.18888 1.20934 1.18957 0.89969 0.89853 0.92470 0.81829 0.88710 0.93015 0.84138 0.93170 0.92576 0.90574 0.92793 0.92998 0.92772 0.91342 0.82175 0.90953 0.90812 0.97078 0.99501 1.01606 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.78 9.79 71.23 0.70 -2.08 16 2 C -0.12 -4.09 5.92 -19.63 -0.12 -4.21 16 3 C -0.05 -1.41 9.53 22.44 0.21 -1.20 16 4 C -0.13 -3.48 5.41 -19.76 -0.11 -3.59 16 5 C 0.12 2.14 5.63 85.56 0.48 2.62 16 6 N -0.69 -13.08 6.30 -495.59 -3.12 -16.20 16 7 C 0.08 1.12 3.22 44.91 0.14 1.27 16 8 C -0.15 -2.07 9.18 71.98 0.66 -1.41 16 9 C -0.14 -1.86 9.41 71.98 0.68 -1.18 16 10 C 0.09 2.96 10.85 84.63 0.92 3.88 16 11 N -0.54 -23.06 9.80 -193.26 -1.89 -24.95 16 12 C 0.27 11.45 5.25 133.05 0.70 12.15 16 13 N -0.49 -23.29 3.69 -731.09 -2.70 -25.99 16 14 C 0.05 2.27 9.17 127.69 1.17 3.44 16 15 C 0.23 13.29 4.44 85.56 0.38 13.67 16 16 C -0.53 -30.99 8.54 25.60 0.22 -30.77 16 17 H 0.07 3.99 7.10 -2.91 -0.02 3.97 16 18 C 0.00 0.01 5.46 84.65 0.46 0.47 16 19 N -0.94 -58.83 13.29 21.44 0.28 -58.55 16 20 Si 0.98 45.11 29.54 68.60 2.03 47.13 16 21 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 24 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 25 H 0.08 1.97 8.09 -2.39 -0.02 1.95 16 26 H 0.06 2.07 7.48 -2.39 -0.02 2.05 16 27 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.09 1.48 7.39 -2.39 -0.02 1.46 16 29 H 0.05 0.83 8.00 -2.39 -0.02 0.81 16 30 H 0.34 6.93 8.34 -89.69 -0.75 6.18 16 31 H 0.05 0.67 7.80 -2.39 -0.02 0.65 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 0.74 8.12 -2.39 -0.02 0.72 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.72 7.45 -2.39 -0.02 0.70 16 37 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 39 H 0.07 2.60 8.11 -2.39 -0.02 2.58 16 40 H 0.07 3.16 6.91 -2.39 -0.02 3.14 16 41 H 0.01 0.48 8.06 -2.38 -0.02 0.46 16 42 H -0.01 -0.85 8.06 -2.39 -0.02 -0.87 16 43 H -0.03 -2.20 8.05 -2.38 -0.02 -2.22 16 44 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 Total: -1.00 -71.70 359.84 1.32 -70.38 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.21 Total: 15.10 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 6.50 Total: -6.93 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -7.43 Total: -125.69 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -71.70 1.32 -70.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723019363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.156 kcal (2) G-P(sol) polarization free energy of solvation -71.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds