Wall clock time and date at job start Mon Mar 30 2020 07:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47608 * 2 1 4 4 C 1.53006 * 109.47370 * 239.99521 * 2 1 3 5 5 C 1.52999 * 109.46997 * 175.00241 * 4 2 1 6 6 C 1.53006 * 109.46623 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 O 1.42905 * 109.46735 * 179.97438 * 7 6 5 9 9 N 1.46507 * 109.47271 * 119.99615 * 2 1 3 10 10 C 1.39673 * 119.99774 * 275.00383 * 9 2 1 11 11 C 1.38911 * 120.07571 * 359.71551 * 10 9 2 12 12 C 1.38104 * 119.92083 * 179.76779 * 11 10 9 13 13 C 1.38285 * 120.07639 * 0.51473 * 12 11 10 14 14 C 1.50705 * 119.92429 * 179.76095 * 13 12 11 15 15 C 1.50700 * 109.47403 * 269.97917 * 14 13 12 16 16 H 1.07999 * 119.99971 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99944 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00215 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99848 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46913 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46993 * 119.99896 * 19 17 15 22 22 H 1.48496 * 109.47090 * 240.00138 * 19 17 15 23 23 C 1.38279 * 120.15087 * 359.74151 * 13 12 11 24 24 C 1.38105 * 120.07559 * 0.02562 * 23 13 12 25 25 H 1.09000 * 109.46998 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47083 * 300.00419 * 1 2 3 27 27 H 1.08994 * 109.46630 * 60.00427 * 1 2 3 28 28 H 1.09000 * 109.46866 * 55.00029 * 4 2 1 29 29 H 1.09001 * 109.46611 * 295.00146 * 4 2 1 30 30 H 1.09000 * 109.47486 * 60.00167 * 5 4 2 31 31 H 1.09001 * 109.47362 * 299.99445 * 5 4 2 32 32 H 1.08993 * 109.46955 * 300.00075 * 6 5 4 33 33 H 1.09000 * 109.47050 * 59.99904 * 6 5 4 34 34 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 35 35 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 36 36 H 0.96705 * 113.99792 * 180.02562 * 8 7 6 37 37 H 0.96993 * 120.00030 * 94.99690 * 9 2 1 38 38 H 1.07997 * 120.03424 * 0.02562 * 11 10 9 39 39 H 1.08004 * 119.96028 * 180.25203 * 12 11 10 40 40 H 1.08996 * 109.46869 * 29.97909 * 14 13 12 41 41 H 1.08993 * 109.46912 * 149.97710 * 14 13 12 42 42 H 0.96996 * 120.00222 * 180.02562 * 18 17 15 43 43 H 1.07999 * 119.96390 * 179.97438 * 23 13 12 44 44 H 1.08004 * 120.03972 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5649 -0.6134 -1.3135 6 6 4.0750 -1.3354 -2.5624 7 6 5.5997 -1.2269 -2.6271 8 8 6.0762 -1.9016 -3.7933 9 7 2.0184 -0.6906 1.1963 10 6 2.1517 0.0063 2.3994 11 6 1.8273 1.3556 2.4619 12 6 1.9558 2.0404 3.6544 13 6 2.4169 1.3870 4.7825 14 6 2.5608 2.1390 6.0806 15 6 3.9435 2.7322 6.1669 16 1 4.6477 2.5797 5.3624 17 6 4.3094 3.4697 7.2728 18 7 3.4520 3.6551 8.2527 19 14 6.0235 4.2046 7.3801 20 1 6.7901 3.8529 6.1578 21 1 5.9226 5.6819 7.4926 22 1 6.7201 3.6635 8.5746 23 6 2.7457 0.0453 4.7224 24 6 2.6151 -0.6468 3.5345 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.6055 -0.2619 -2.1370 29 1 1.7517 -1.7716 -1.2054 30 1 3.9995 -1.0729 -0.4258 31 1 3.8533 0.4368 -1.3574 32 1 3.7866 -2.3855 -2.5182 33 1 3.6404 -0.8763 -3.4504 34 1 5.8878 -0.1766 -2.6715 35 1 6.0346 -1.6857 -1.7392 36 1 7.0370 -1.8738 -3.8988 37 1 2.2491 -1.6317 1.1528 38 1 1.4711 1.8674 1.5802 39 1 1.6999 3.0884 3.7047 40 1 1.8197 2.9371 6.1222 41 1 2.4060 1.4555 6.9154 42 1 3.7093 4.1742 9.0306 43 1 3.1059 -0.4619 5.6053 44 1 2.8725 -1.6947 3.4881 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903297544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:47 Heat of formation + Delta-G solvation = -57.318544 kcal Electronic energy + Delta-G solvation = -20694.205038 eV Core-core repulsion = 17609.934272 eV Total energy + Delta-G solvation = -3084.270766 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.15605 -37.72747 -36.85229 -34.34236 -33.05266 -31.67434 -30.15590 -29.34660 -28.33161 -26.05820 -23.97369 -22.79373 -22.46657 -21.39316 -20.58009 -19.78193 -17.61255 -17.15192 -16.23557 -16.17095 -15.74501 -14.85169 -14.67138 -14.20949 -14.12352 -13.99927 -13.54861 -13.48846 -12.89855 -12.64106 -12.58907 -12.35602 -12.17122 -12.02583 -11.87452 -11.55007 -11.23786 -11.17412 -11.03986 -10.90779 -10.79386 -10.62548 -10.48528 -10.30276 -10.04345 -9.74226 -9.38000 -8.97135 -8.36318 -8.18984 -6.70950 -5.95844 -4.00350 2.16750 2.41865 3.32457 3.39888 3.45192 3.67846 3.80766 4.45705 4.58962 4.65189 4.67440 4.73258 4.93477 5.03093 5.09841 5.22427 5.36711 5.41953 5.45611 5.50220 5.57540 5.58680 5.60134 5.68901 5.71817 5.86855 5.98239 6.07427 6.11035 6.14435 6.24617 6.37358 6.52006 6.76189 6.91212 7.26160 7.34654 7.34974 7.49642 7.65198 7.90955 7.99700 8.01657 8.12137 8.43468 9.05916 9.63068 11.12422 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016904 B = 0.003283 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.972952 B = 8526.594164 C = 9688.074124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.152 3.848 3 H 0.077 0.923 4 C -0.123 4.123 5 C -0.117 4.117 6 C -0.119 4.119 7 C 0.073 3.927 8 O -0.579 6.579 9 N -0.751 5.751 10 C 0.184 3.816 11 C -0.196 4.196 12 C -0.081 4.081 13 C -0.085 4.085 14 C 0.053 3.947 15 C -0.507 4.507 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.080 4.080 24 C -0.195 4.195 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.379 0.621 37 H 0.391 0.609 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.260 0.740 43 H 0.115 0.885 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 -9.960 -20.831 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.046 3.954 3 H 0.095 0.905 4 C -0.161 4.161 5 C -0.154 4.154 6 C -0.157 4.157 7 C -0.005 4.005 8 O -0.384 6.384 9 N -0.384 5.384 10 C 0.085 3.915 11 C -0.218 4.218 12 C -0.100 4.100 13 C -0.087 4.087 14 C 0.016 3.984 15 C -0.545 4.545 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.099 4.099 24 C -0.217 4.217 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.226 0.774 37 H 0.225 0.775 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.133 0.867 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.070 -9.845 -20.870 23.168 hybrid contribution 1.660 0.238 0.272 1.698 sum -0.410 -9.607 -20.598 22.732 Atomic orbital electron populations 1.22301 0.96393 1.02034 1.02056 1.20791 0.93163 0.96986 0.84479 0.90522 1.21841 0.95479 1.01167 0.97612 1.21497 0.95572 1.00978 0.97395 1.21536 0.93672 1.01644 0.98820 1.22243 0.95389 0.95652 0.87202 1.86459 1.27253 1.78790 1.45911 1.44508 1.75284 1.11648 1.06914 1.17595 0.96699 0.91519 0.85693 1.20535 1.09868 0.93009 0.98400 1.20848 0.98126 0.99135 0.91877 1.20439 0.96908 0.93621 0.97719 1.18247 0.97180 0.94549 0.88449 1.21176 0.97927 1.31730 1.03658 0.92531 1.25023 0.97263 0.96459 0.95761 1.69968 1.34781 1.40677 1.08153 0.86524 0.84620 0.78855 0.77977 1.19731 1.21025 1.21020 1.20818 0.98143 0.94389 0.96522 1.20456 1.09247 0.99232 0.92804 0.92701 0.91932 0.92366 0.90766 0.91576 0.91235 0.91650 0.91407 0.91408 0.93583 0.93551 0.77407 0.77507 0.87313 0.86759 0.95731 0.95736 0.93031 0.86710 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.44 37.16 0.35 -1.27 16 2 C 0.15 1.51 2.27 -67.92 -0.15 1.36 16 3 H 0.08 0.85 6.47 -51.93 -0.34 0.51 16 4 C -0.12 -0.96 4.75 -26.73 -0.13 -1.09 16 5 C -0.12 -0.97 5.10 -26.73 -0.14 -1.11 16 6 C -0.12 -0.97 5.58 -26.73 -0.15 -1.12 16 7 C 0.07 0.59 7.05 37.16 0.26 0.85 16 8 O -0.58 -5.04 13.66 -35.23 -0.48 -5.52 16 9 N -0.75 -8.94 4.70 -52.16 -0.25 -9.19 16 10 C 0.18 2.92 6.64 -83.79 -0.56 2.36 16 11 C -0.20 -3.33 8.86 -39.38 -0.35 -3.68 16 12 C -0.08 -1.63 9.69 -39.61 -0.38 -2.01 16 13 C -0.09 -1.90 5.07 -104.59 -0.53 -2.43 16 14 C 0.05 1.39 5.10 -29.03 -0.15 1.24 16 15 C -0.51 -14.47 9.09 -34.44 -0.31 -14.78 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 19 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 C -0.08 -1.60 9.69 -39.62 -0.38 -1.99 16 24 C -0.20 -3.31 9.90 -39.38 -0.39 -3.70 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.71 7.75 -51.93 -0.40 0.31 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.64 7.75 -51.93 -0.40 0.24 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.38 1.61 9.12 45.56 0.42 2.03 16 37 H 0.39 4.10 8.61 -40.82 -0.35 3.75 16 38 H 0.11 1.61 6.15 -52.49 -0.32 1.29 16 39 H 0.11 2.24 8.06 -52.48 -0.42 1.82 16 40 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 41 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.11 2.25 8.06 -52.49 -0.42 1.82 16 44 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 361.72 15.07 5.45 5.45 Total: -1.00 -31.87 361.72 -9.52 -41.39 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.85 Total: 3.11 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -3.11 Total: -25.86 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.49 Total: -35.36 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.48 Total: -5.52 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.87 -9.52 -41.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.931 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds