Wall clock time and date at job start Mon Mar 30 2020 08:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47244 * 2 1 4 4 C 1.39165 * 120.00077 * 180.02562 * 3 2 1 5 5 C 1.39499 * 120.86314 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.06409 * 180.02562 * 5 4 3 7 7 N 1.32004 * 120.84910 * 359.97438 * 6 5 4 8 8 C 1.31982 * 121.90779 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.57822 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.47464 * 275.19736 * 9 8 7 11 11 C 1.46899 * 110.99967 * 283.89558 * 10 9 8 12 12 C 1.50698 * 109.47234 * 169.99824 * 11 10 9 13 13 H 1.08008 * 119.99732 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00383 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00003 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00204 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46819 * 60.00439 * 16 14 12 18 18 H 1.48499 * 109.46972 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47318 * 300.00431 * 16 14 12 20 20 C 1.46897 * 110.99793 * 159.94178 * 10 9 8 21 21 C 1.52998 * 109.47332 * 292.99605 * 20 10 9 22 22 C 1.52997 * 109.47643 * 53.00173 * 20 10 9 23 23 C 1.37918 * 120.84427 * 0.28425 * 8 7 6 24 24 H 1.09001 * 109.46698 * 300.00144 * 1 2 3 25 25 H 1.09004 * 109.46599 * 59.99941 * 1 2 3 26 26 H 1.08996 * 109.47265 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46698 * 239.99855 * 2 1 3 28 28 H 1.08997 * 109.47058 * 120.00539 * 2 1 3 29 29 H 0.97001 * 119.99897 * 359.97438 * 3 2 1 30 30 H 1.07994 * 120.46763 * 0.02562 * 5 4 3 31 31 H 1.08005 * 119.57510 * 179.97438 * 6 5 4 32 32 H 1.09011 * 109.47083 * 155.19831 * 9 8 7 33 33 H 1.08997 * 109.47120 * 35.20313 * 9 8 7 34 34 H 1.09002 * 109.47157 * 289.99766 * 11 10 9 35 35 H 1.08997 * 109.47291 * 49.99896 * 11 10 9 36 36 H 0.97002 * 120.00250 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.47145 * 172.99756 * 20 10 9 38 38 H 1.09002 * 109.46883 * 59.99990 * 21 20 10 39 39 H 1.09001 * 109.47502 * 179.97438 * 21 20 10 40 40 H 1.08996 * 109.47682 * 300.00577 * 21 20 10 41 41 H 1.09002 * 109.47147 * 59.99649 * 22 20 10 42 42 H 1.08999 * 109.47767 * 179.97438 * 22 20 10 43 43 H 1.09000 * 109.46959 * 299.99710 * 22 20 10 44 44 H 1.07993 * 120.47089 * 179.71824 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3867 1.6355 -0.0005 5 6 4.3090 0.5889 -0.0005 6 6 5.6560 0.8833 -0.0006 7 7 6.0753 2.1350 -0.0011 8 6 5.2345 3.1523 -0.0011 9 6 5.7709 4.5606 -0.0022 10 7 6.0634 4.9744 1.3766 11 6 4.8282 5.3011 2.1015 12 6 5.1374 5.4809 3.5654 13 1 6.1504 5.3647 3.9216 14 6 4.1274 5.7950 4.4499 15 7 2.8941 5.9370 4.0161 16 14 4.5107 6.0172 6.2646 17 1 5.4901 7.1208 6.4321 18 1 3.2620 6.3475 6.9973 19 1 5.0845 4.7596 6.8070 20 6 7.0016 6.1046 1.3992 21 6 8.3662 5.6451 0.8819 22 6 6.4694 7.2273 0.5065 23 6 3.8713 2.9431 0.0053 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.3881 2.1185 -0.0004 30 1 3.9728 -0.4373 -0.0006 31 1 6.3773 0.0794 -0.0001 32 1 5.0281 5.2320 -0.4333 33 1 6.6846 4.6009 -0.5953 34 1 4.4064 6.2239 1.7032 35 1 4.1098 4.4906 1.9788 36 1 2.1834 6.1576 4.6384 37 1 7.1049 6.4707 2.4207 38 1 8.2630 5.2789 -0.1396 39 1 9.0623 6.4837 0.8982 40 1 8.7455 4.8452 1.5178 41 1 5.4973 7.5547 0.8751 42 1 7.1653 8.0661 0.5236 43 1 6.3662 6.8613 -0.5150 44 1 3.1889 3.7800 0.0098 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092418795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:33 Heat of formation + Delta-G solvation = 33.472443 kcal Electronic energy + Delta-G solvation = -21970.183321 eV Core-core repulsion = 18922.142299 eV Total energy + Delta-G solvation = -3048.041022 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.85834 -37.63753 -36.37249 -32.73273 -32.09203 -31.98800 -29.96696 -28.52071 -27.39402 -26.48629 -24.85573 -23.21189 -22.72450 -21.91278 -20.77077 -18.68788 -16.96132 -16.45912 -16.09697 -15.30719 -15.16830 -15.10427 -14.67727 -14.42703 -14.11456 -13.63476 -13.30885 -13.28170 -12.71043 -12.49912 -12.42596 -12.25040 -11.99682 -11.91956 -11.78463 -11.34982 -11.20571 -11.04387 -10.80216 -10.68055 -10.52187 -10.44657 -10.31494 -9.91976 -9.68629 -9.10131 -8.84135 -8.46499 -8.36770 -7.54215 -7.08435 -5.97566 -3.96730 1.69023 2.03455 3.36514 3.39752 3.43875 3.45823 4.31695 4.49245 4.82766 4.89263 4.93834 5.08919 5.16796 5.30118 5.38788 5.41312 5.56046 5.64407 5.74434 5.75643 5.79323 5.85473 5.91408 5.97728 6.09597 6.15834 6.20237 6.24933 6.37274 6.41406 6.43984 6.53880 6.65794 6.90290 6.98528 7.06767 7.42182 7.46411 7.47600 7.76816 7.87606 8.19160 8.33098 8.63833 8.73499 9.10418 9.66333 11.13270 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012157 B = 0.005987 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.600525 B = 4675.654888 C = 6219.185422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.121 3.879 3 N -0.741 5.741 4 C 0.247 3.753 5 C -0.262 4.262 6 C 0.133 3.867 7 N -0.509 5.509 8 C 0.193 3.807 9 C 0.099 3.901 10 N -0.519 5.519 11 C 0.188 3.812 12 C -0.501 4.501 13 H 0.061 0.939 14 C 0.055 3.945 15 N -0.900 5.900 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.277 1.277 20 C 0.083 3.917 21 C -0.140 4.140 22 C -0.182 4.182 23 C -0.229 4.229 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.402 0.598 30 H 0.122 0.878 31 H 0.146 0.854 32 H 0.039 0.961 33 H 0.081 0.919 34 H -0.006 1.006 35 H 0.034 0.966 36 H 0.259 0.741 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.046 0.954 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.915 -8.551 -10.674 13.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.003 4.003 3 N -0.372 5.372 4 C 0.136 3.864 5 C -0.287 4.287 6 C -0.024 4.024 7 N -0.221 5.221 8 C 0.056 3.944 9 C -0.030 4.030 10 N -0.243 5.243 11 C 0.063 3.937 12 C -0.540 4.540 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.540 5.540 16 Si 0.722 3.278 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.203 1.203 20 C -0.026 4.026 21 C -0.197 4.197 22 C -0.240 4.240 23 C -0.255 4.255 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.237 0.763 30 H 0.140 0.860 31 H 0.163 0.837 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.012 0.988 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.038 -8.939 -10.360 13.684 hybrid contribution -1.688 0.817 0.777 2.030 sum -1.726 -8.122 -9.583 12.680 Atomic orbital electron populations 1.21974 0.94660 1.02854 1.02749 1.21259 0.94432 0.83606 1.01052 1.44587 1.03354 1.07376 1.81922 1.17959 0.84161 0.93469 0.90821 1.21444 0.94273 0.98247 1.14778 1.22353 0.92988 0.93879 0.93214 1.67506 1.39324 0.98945 1.16364 1.20869 0.88495 0.95008 0.90013 1.20919 0.99458 0.89376 0.93199 1.62198 1.16304 1.35638 1.10198 1.19828 0.85807 0.95066 0.92967 1.21137 0.94618 1.46127 0.92091 0.92039 1.24943 0.95010 0.95795 0.98782 1.69943 0.99941 1.49301 1.34838 0.86619 0.77377 0.78627 0.85144 1.20273 1.21480 1.20279 1.21590 0.91742 0.89140 1.00102 1.21858 0.96517 1.00536 1.00836 1.22461 1.02081 0.99693 0.99813 1.21437 0.97108 0.95269 1.11650 0.91762 0.92070 0.91030 0.92435 0.92265 0.76318 0.85984 0.83655 0.94257 0.90123 0.98841 0.94830 0.93111 0.88932 0.93309 0.93525 0.92195 0.92004 0.93277 0.93533 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 10.03 37.16 0.37 -0.95 16 2 C 0.12 1.23 5.67 -4.04 -0.02 1.20 16 3 N -0.74 -9.79 5.72 -58.46 -0.33 -10.13 16 4 C 0.25 4.01 6.70 -83.61 -0.56 3.45 16 5 C -0.26 -3.95 9.38 -39.24 -0.37 -4.32 16 6 C 0.13 2.14 11.17 -17.61 -0.20 1.95 16 7 N -0.51 -9.71 10.27 -9.57 -0.10 -9.81 16 8 C 0.19 3.77 5.96 -82.65 -0.49 3.28 16 9 C 0.10 1.92 3.87 -4.98 -0.02 1.90 16 10 N -0.52 -11.48 4.36 -229.52 -1.00 -12.48 16 11 C 0.19 4.90 4.43 -4.98 -0.02 4.88 16 12 C -0.50 -14.23 8.36 -34.44 -0.29 -14.52 16 13 H 0.06 1.75 7.19 -52.48 -0.38 1.37 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 16 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C 0.08 1.63 2.77 -67.72 -0.19 1.45 16 21 C -0.14 -2.32 9.18 37.16 0.34 -1.98 16 22 C -0.18 -3.21 8.52 37.16 0.32 -2.89 16 23 C -0.23 -4.23 8.29 -39.24 -0.33 -4.55 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.54 7.99 -51.93 -0.42 0.12 16 28 H 0.06 0.62 7.99 -51.93 -0.42 0.21 16 29 H 0.40 5.02 8.50 -40.82 -0.35 4.67 16 30 H 0.12 1.50 6.89 -52.49 -0.36 1.14 16 31 H 0.15 1.86 8.06 -52.48 -0.42 1.43 16 32 H 0.04 0.74 7.24 -51.92 -0.38 0.36 16 33 H 0.08 1.45 5.88 -51.93 -0.31 1.14 16 34 H -0.01 -0.17 6.45 -51.93 -0.33 -0.50 16 35 H 0.03 0.94 6.27 -51.93 -0.33 0.62 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.09 2.03 6.63 -51.93 -0.34 1.68 16 38 H 0.05 0.77 6.29 -51.93 -0.33 0.44 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.23 6.62 -51.93 -0.34 0.88 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.75 6.74 -51.93 -0.35 0.40 16 44 H 0.13 2.34 7.95 -52.49 -0.42 1.93 16 LS Contribution 348.14 15.07 5.25 5.25 Total: -1.00 -31.62 348.14 -9.15 -40.77 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.13 Total: 4.99 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -1.55 Total: -9.63 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.70 Total: -58.39 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.62 -9.15 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092418795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.247 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds