Wall clock time and date at job start Mon Mar 30 2020 08:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47244 * 2 1 4 4 C 1.39165 * 120.00077 * 180.02562 * 3 2 1 5 5 C 1.39499 * 120.86314 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.06409 * 180.02562 * 5 4 3 7 7 N 1.32004 * 120.84910 * 359.97438 * 6 5 4 8 8 C 1.31982 * 121.90779 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.57822 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.47464 * 275.19736 * 9 8 7 11 11 C 1.46899 * 110.99967 * 283.89558 * 10 9 8 12 12 C 1.50698 * 109.47234 * 169.99824 * 11 10 9 13 13 H 1.08008 * 119.99732 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00383 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00003 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00204 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46819 * 60.00439 * 16 14 12 18 18 H 1.48499 * 109.46972 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47318 * 300.00431 * 16 14 12 20 20 C 1.46897 * 110.99793 * 159.94178 * 10 9 8 21 21 C 1.52998 * 109.47332 * 292.99605 * 20 10 9 22 22 C 1.52997 * 109.47643 * 53.00173 * 20 10 9 23 23 C 1.37918 * 120.84427 * 0.28425 * 8 7 6 24 24 H 1.09001 * 109.46698 * 300.00144 * 1 2 3 25 25 H 1.09004 * 109.46599 * 59.99941 * 1 2 3 26 26 H 1.08996 * 109.47265 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46698 * 239.99855 * 2 1 3 28 28 H 1.08997 * 109.47058 * 120.00539 * 2 1 3 29 29 H 0.97001 * 119.99897 * 359.97438 * 3 2 1 30 30 H 1.07994 * 120.46763 * 0.02562 * 5 4 3 31 31 H 1.08005 * 119.57510 * 179.97438 * 6 5 4 32 32 H 1.09011 * 109.47083 * 155.19831 * 9 8 7 33 33 H 1.08997 * 109.47120 * 35.20313 * 9 8 7 34 34 H 1.09002 * 109.47157 * 289.99766 * 11 10 9 35 35 H 1.08997 * 109.47291 * 49.99896 * 11 10 9 36 36 H 0.97002 * 120.00250 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.47145 * 172.99756 * 20 10 9 38 38 H 1.09002 * 109.46883 * 59.99990 * 21 20 10 39 39 H 1.09001 * 109.47502 * 179.97438 * 21 20 10 40 40 H 1.08996 * 109.47682 * 300.00577 * 21 20 10 41 41 H 1.09002 * 109.47147 * 59.99649 * 22 20 10 42 42 H 1.08999 * 109.47767 * 179.97438 * 22 20 10 43 43 H 1.09000 * 109.46959 * 299.99710 * 22 20 10 44 44 H 1.07993 * 120.47089 * 179.71824 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3867 1.6355 -0.0005 5 6 4.3090 0.5889 -0.0005 6 6 5.6560 0.8833 -0.0006 7 7 6.0753 2.1350 -0.0011 8 6 5.2345 3.1523 -0.0011 9 6 5.7709 4.5606 -0.0022 10 7 6.0634 4.9744 1.3766 11 6 4.8282 5.3011 2.1015 12 6 5.1374 5.4809 3.5654 13 1 6.1504 5.3647 3.9216 14 6 4.1274 5.7950 4.4499 15 7 2.8941 5.9370 4.0161 16 14 4.5107 6.0172 6.2646 17 1 5.4901 7.1208 6.4321 18 1 3.2620 6.3475 6.9973 19 1 5.0845 4.7596 6.8070 20 6 7.0016 6.1046 1.3992 21 6 8.3662 5.6451 0.8819 22 6 6.4694 7.2273 0.5065 23 6 3.8713 2.9431 0.0053 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.3881 2.1185 -0.0004 30 1 3.9728 -0.4373 -0.0006 31 1 6.3773 0.0794 -0.0001 32 1 5.0281 5.2320 -0.4333 33 1 6.6846 4.6009 -0.5953 34 1 4.4064 6.2239 1.7032 35 1 4.1098 4.4906 1.9788 36 1 2.1834 6.1576 4.6384 37 1 7.1049 6.4707 2.4207 38 1 8.2630 5.2789 -0.1396 39 1 9.0623 6.4837 0.8982 40 1 8.7455 4.8452 1.5178 41 1 5.4973 7.5547 0.8751 42 1 7.1653 8.0661 0.5236 43 1 6.3662 6.8613 -0.5150 44 1 3.1889 3.7800 0.0098 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092418795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:33 Heat of formation + Delta-G solvation = 12.322151 kcal Electronic energy + Delta-G solvation = -21971.100467 eV Core-core repulsion = 18922.142299 eV Total energy + Delta-G solvation = -3048.958167 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17629 -39.22508 -37.49352 -34.87388 -33.47336 -33.06163 -31.63004 -29.59451 -29.17423 -27.93510 -26.55091 -24.36058 -24.19449 -23.50507 -22.04665 -20.28547 -18.36423 -18.19927 -17.61419 -16.82102 -16.57405 -16.42152 -16.00777 -15.84844 -15.53919 -15.09551 -14.76283 -14.69754 -14.25448 -14.03850 -13.87281 -13.56674 -13.17106 -13.07467 -12.89300 -12.73499 -12.68903 -12.67489 -12.51834 -12.34985 -12.22637 -12.01674 -11.69985 -11.47489 -11.42007 -11.13163 -10.57108 -10.20136 -9.81418 -8.85940 -8.70749 -8.17589 -6.25169 0.36198 0.73239 1.38178 1.41302 1.48754 2.39969 2.41435 2.95923 3.14899 3.53890 3.60613 3.91040 4.10512 4.14362 4.19444 4.21977 4.33478 4.39058 4.46236 4.51838 4.60538 4.60978 4.71246 4.84147 4.88292 4.91803 4.96811 5.03659 5.04706 5.08443 5.15499 5.19998 5.24031 5.30769 5.31507 5.49449 5.59098 5.70343 5.82002 6.12729 6.31158 6.48672 6.65645 6.72252 6.90793 7.38853 7.42922 8.92667 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012157 B = 0.005987 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.600525 B = 4675.654888 C = 6219.185422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 N -0.738 5.738 4 C 0.243 3.757 5 C -0.257 4.257 6 C 0.127 3.873 7 N -0.535 5.535 8 C 0.171 3.829 9 C 0.105 3.895 10 N -0.529 5.529 11 C 0.210 3.790 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.961 3.039 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.274 1.274 20 C 0.076 3.924 21 C -0.127 4.127 22 C -0.171 4.171 23 C -0.253 4.253 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.402 0.598 30 H 0.155 0.845 31 H 0.180 0.820 32 H 0.036 0.964 33 H 0.096 0.904 34 H -0.031 1.031 35 H 0.007 0.993 36 H 0.262 0.738 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.247 -9.948 -10.878 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.008 4.008 3 N -0.368 5.368 4 C 0.130 3.870 5 C -0.282 4.282 6 C -0.030 4.030 7 N -0.248 5.248 8 C 0.035 3.965 9 C -0.023 4.023 10 N -0.253 5.253 11 C 0.084 3.916 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.193 4.193 15 N -0.571 5.571 16 Si 0.786 3.214 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.199 1.199 20 C -0.032 4.032 21 C -0.185 4.185 22 C -0.230 4.230 23 C -0.279 4.279 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.237 0.763 30 H 0.173 0.827 31 H 0.197 0.803 32 H 0.054 0.946 33 H 0.114 0.886 34 H -0.013 1.013 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.049 0.951 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.623 -10.347 -10.579 14.811 hybrid contribution -1.945 1.174 0.791 2.405 sum -1.322 -9.173 -9.788 13.480 Atomic orbital electron populations 1.21950 0.93004 1.04194 1.02496 1.21511 0.95853 0.81753 1.01685 1.44835 1.02314 1.08984 1.80664 1.18137 0.85765 0.92960 0.90151 1.21765 0.93688 0.99393 1.13390 1.22968 0.94366 0.93653 0.91983 1.67491 1.39656 0.99942 1.17726 1.20869 0.89036 0.95195 0.91422 1.20897 1.00064 0.89745 0.91613 1.62115 1.14656 1.36688 1.11872 1.19386 0.86963 0.92714 0.92557 1.21424 0.94435 1.46311 0.93529 0.92660 1.25792 0.94783 0.95327 1.03408 1.70068 1.00809 1.49870 1.36401 0.85570 0.77554 0.78807 0.79499 1.19155 1.20706 1.19924 1.21668 0.93033 0.89204 0.99286 1.21748 0.94719 1.01212 1.00810 1.22339 1.00869 0.99881 0.99923 1.21420 0.96842 0.96166 1.13470 0.92725 0.91630 0.88848 0.90889 0.92294 0.76276 0.82720 0.80275 0.94560 0.88568 1.01317 0.97498 0.92937 0.91780 0.92235 0.90704 0.93335 0.95119 0.90646 0.91956 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 10.03 71.98 0.72 -1.51 16 2 C 0.12 2.10 5.67 86.38 0.49 2.59 16 3 N -0.74 -19.07 5.72 -338.87 -1.94 -21.01 16 4 C 0.24 7.83 6.70 38.58 0.26 8.09 16 5 C -0.26 -7.30 9.38 22.49 0.21 -7.08 16 6 C 0.13 3.88 11.17 84.58 0.94 4.83 16 7 N -0.53 -20.25 10.27 -184.20 -1.89 -22.14 16 8 C 0.17 6.85 5.96 42.46 0.25 7.10 16 9 C 0.11 4.16 3.87 85.56 0.33 4.49 16 10 N -0.53 -24.13 4.36 -880.08 -3.83 -27.96 16 11 C 0.21 11.48 4.43 85.56 0.38 11.86 16 12 C -0.52 -30.42 8.36 25.60 0.21 -30.21 16 13 H 0.06 3.24 7.19 -2.91 -0.02 3.22 16 14 C 0.00 0.28 5.46 84.65 0.46 0.74 16 15 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 16 Si 0.96 45.65 29.54 68.60 2.03 47.68 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 20 C 0.08 3.04 2.77 44.91 0.12 3.16 16 21 C -0.13 -4.05 9.18 71.98 0.66 -3.39 16 22 C -0.17 -6.04 8.52 71.98 0.61 -5.43 16 23 C -0.25 -9.71 8.29 22.49 0.19 -9.53 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 1.15 7.99 -2.39 -0.02 1.13 16 28 H 0.06 1.11 7.99 -2.39 -0.02 1.09 16 29 H 0.40 10.16 8.50 -92.71 -0.79 9.37 16 30 H 0.16 3.29 6.89 -2.91 -0.02 3.27 16 31 H 0.18 4.06 8.06 -2.91 -0.02 4.04 16 32 H 0.04 1.43 7.24 -2.38 -0.02 1.41 16 33 H 0.10 3.43 5.88 -2.39 -0.01 3.41 16 34 H -0.03 -1.79 6.45 -2.39 -0.02 -1.81 16 35 H 0.01 0.41 6.27 -2.39 -0.01 0.40 16 36 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.06 2.89 6.63 -2.39 -0.02 2.87 16 38 H 0.06 1.76 6.29 -2.39 -0.02 1.75 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.03 1.25 6.62 -2.39 -0.02 1.23 16 42 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.06 1.97 6.74 -2.39 -0.02 1.96 16 44 H 0.11 4.48 7.95 -2.91 -0.02 4.45 16 Total: -1.00 -70.12 348.14 0.69 -69.43 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.20 Total: 24.70 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 5.85 Total: -14.30 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -7.38 Total: -127.51 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.12 0.69 -69.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092418795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.752 kcal (2) G-P(sol) polarization free energy of solvation -70.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds