Wall clock time and date at job start Mon Mar 30 2020 07:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50690 * 109.47226 * 2 1 4 4 C 1.38606 * 120.40256 * 124.99996 * 3 2 1 5 5 C 1.38608 * 118.55898 * 180.02562 * 4 3 2 6 6 C 1.50704 * 120.40093 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47061 * 125.02273 * 6 5 4 8 8 N 1.32273 * 119.19912 * 0.02562 * 5 4 3 9 9 C 1.32499 * 120.73804 * 359.97438 * 8 5 4 10 10 N 1.38405 * 119.21460 * 180.02562 * 9 8 5 11 11 C 1.46498 * 120.00241 * 359.72737 * 10 9 8 12 12 C 1.50702 * 109.47425 * 89.99686 * 11 10 9 13 13 H 1.07999 * 119.99972 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99945 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00104 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99887 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46951 * 89.99923 * 16 14 12 18 18 H 1.48499 * 109.47146 * 210.00270 * 16 14 12 19 19 H 1.48504 * 109.46989 * 330.00426 * 16 14 12 20 20 C 1.46499 * 119.99936 * 180.02562 * 10 9 8 21 21 C 1.53004 * 109.47320 * 120.00165 * 20 10 9 22 22 C 1.53010 * 109.47366 * 240.00067 * 20 10 9 23 23 N 1.32277 * 120.40314 * 305.29337 * 3 2 1 24 24 H 1.09002 * 109.46687 * 60.00372 * 1 2 3 25 25 H 1.08996 * 109.47030 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46773 * 300.00200 * 1 2 3 27 27 H 1.09003 * 109.46773 * 239.99800 * 2 1 3 28 28 H 1.09000 * 109.46861 * 120.00383 * 2 1 3 29 29 H 1.08001 * 120.72235 * 0.04258 * 4 3 2 30 30 H 1.08997 * 109.47038 * 245.02513 * 6 5 4 31 31 H 1.09002 * 109.47099 * 5.02441 * 6 5 4 32 32 H 1.09002 * 109.47027 * 60.00124 * 7 6 5 33 33 H 1.08998 * 109.46806 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.46992 * 300.00261 * 7 6 5 35 35 H 1.09002 * 109.47489 * 210.00004 * 11 10 9 36 36 H 1.08996 * 109.47047 * 329.99716 * 11 10 9 37 37 H 0.96996 * 120.00019 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.47376 * 359.97438 * 20 10 9 39 39 H 1.08998 * 109.46756 * 59.99790 * 21 20 10 40 40 H 1.09005 * 109.46997 * 180.02562 * 21 20 10 41 41 H 1.08998 * 109.46853 * 299.99835 * 21 20 10 42 42 H 1.09000 * 109.46705 * 59.99517 * 22 20 10 43 43 H 1.08991 * 109.46973 * 179.97438 * 22 20 10 44 44 H 1.08998 * 109.46636 * 300.00164 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9127 1.8535 0.9793 5 6 3.3500 3.1683 0.9431 6 6 4.3068 3.6828 1.9875 7 6 5.5377 4.2794 1.3019 8 7 2.9165 3.9662 -0.0187 9 6 2.0748 3.5210 -0.9401 10 7 1.6418 4.3831 -1.9325 11 6 2.1095 5.7713 -1.9523 12 6 3.3709 5.8650 -2.7715 13 1 3.7828 4.9791 -3.2318 14 6 3.9985 7.0818 -2.9342 15 7 3.4965 8.1606 -2.3741 16 14 5.5617 7.1980 -3.9503 17 1 5.2117 7.4693 -5.3678 18 1 6.4095 8.3005 -3.4299 19 1 6.3065 5.9163 -3.8611 20 6 0.7108 3.9092 -2.9595 21 6 -0.5737 4.7387 -2.9054 22 6 1.3553 4.0566 -4.3395 23 7 1.6341 2.2716 -0.9312 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.2508 1.1807 1.7536 30 1 3.8149 4.4512 2.5839 31 1 4.6140 2.8615 2.6350 32 1 5.2305 5.1007 0.6544 33 1 6.2295 4.6519 2.0573 34 1 6.0295 3.5109 0.7055 35 1 1.3418 6.4071 -2.3933 36 1 2.3127 6.1007 -0.9334 37 1 3.9378 9.0167 -2.4889 38 1 0.4744 2.8605 -2.7796 39 1 -0.3369 5.7872 -3.0857 40 1 -1.2666 4.3857 -3.6693 41 1 -1.0329 4.6336 -1.9225 42 1 2.2704 3.4657 -4.3780 43 1 0.6627 3.7035 -5.1034 44 1 1.5920 5.1052 -4.5196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310776125.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:17 Heat of formation + Delta-G solvation = 34.728980 kcal Electronic energy + Delta-G solvation = -22538.813079 eV Core-core repulsion = 19490.826544 eV Total energy + Delta-G solvation = -3047.986534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.41032 -37.14858 -35.16814 -33.56546 -32.79339 -31.17810 -30.63559 -29.29647 -26.96248 -26.55407 -25.02752 -23.33509 -22.92320 -22.06699 -20.13410 -19.10719 -16.85187 -16.68531 -16.32046 -14.93952 -14.73156 -14.62407 -14.30905 -14.06474 -13.81055 -13.57885 -13.44276 -13.00990 -12.77099 -12.41727 -12.24136 -11.79294 -11.64978 -11.50560 -11.46699 -11.19705 -11.12191 -11.07266 -10.94585 -10.79310 -10.72559 -10.54237 -10.31879 -10.04884 -9.88694 -9.65972 -9.58867 -9.05987 -8.40863 -8.20291 -6.93460 -5.98157 -4.02271 1.83483 1.90948 3.30633 3.37445 3.41314 3.62244 4.45016 4.55181 4.61419 4.76318 5.12953 5.32028 5.34057 5.38832 5.42822 5.52759 5.64204 5.68784 5.74775 5.75990 5.81048 5.89166 5.90888 6.01041 6.12309 6.16019 6.17908 6.23722 6.31470 6.37574 6.42936 6.48255 6.48927 6.73149 6.79774 6.91611 7.11241 7.20748 7.51773 7.75276 7.91226 8.02338 8.30599 8.47487 8.97117 9.20322 9.60936 11.07766 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014361 B = 0.006968 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.191023 B = 4017.457319 C = 5330.337969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.069 4.069 3 C 0.213 3.787 4 C -0.318 4.318 5 C 0.219 3.781 6 C -0.069 4.069 7 C -0.144 4.144 8 N -0.545 5.545 9 C 0.578 3.422 10 N -0.556 5.556 11 C 0.256 3.744 12 C -0.511 4.511 13 H 0.055 0.945 14 C 0.062 3.938 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.149 3.851 21 C -0.159 4.159 22 C -0.154 4.154 23 N -0.586 5.586 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.033 0.967 36 H 0.047 0.953 37 H 0.261 0.739 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 -12.581 5.477 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C 0.064 3.936 4 C -0.345 4.345 5 C 0.068 3.932 6 C -0.107 4.107 7 C -0.201 4.201 8 N -0.267 5.267 9 C 0.223 3.777 10 N -0.267 5.267 11 C 0.137 3.863 12 C -0.550 4.550 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.201 1.201 20 C 0.045 3.955 21 C -0.217 4.217 22 C -0.212 4.212 23 N -0.311 5.311 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.145 0.855 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.242 -11.539 4.563 13.114 hybrid contribution 1.319 -0.356 0.055 1.367 sum -2.924 -11.895 4.618 13.091 Atomic orbital electron populations 1.21628 0.94242 1.01167 1.02738 1.20440 0.96856 0.90690 1.02744 1.21143 0.89466 0.94823 0.88145 1.21935 1.08777 0.98436 1.05371 1.21350 0.91076 0.89315 0.91463 1.20453 0.94700 1.00653 0.94869 1.21659 0.95934 1.01978 1.00574 1.67877 1.15515 1.38133 1.05169 1.19325 0.86199 0.85083 0.87058 1.46959 1.44872 1.11432 1.23483 1.19299 0.94212 0.73954 0.98824 1.21422 1.08945 0.93791 1.30888 0.92671 1.24869 0.97360 0.95671 0.96027 1.69928 1.40147 0.99110 1.44351 0.86612 0.83568 0.77637 0.80279 1.20768 1.21194 1.20111 1.20893 0.88195 0.98811 0.87643 1.22153 0.96937 1.01576 1.01053 1.22128 0.99855 1.04109 0.95121 1.67600 1.31569 1.03400 1.28504 0.91511 0.92707 0.93078 0.90143 0.90533 0.85465 0.90031 0.90797 0.90361 0.92850 0.93260 0.94879 0.93490 0.92896 0.89068 0.91670 0.92331 0.93190 0.93038 0.93333 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.78 37.16 0.36 -1.21 16 2 C -0.07 -0.83 6.36 -27.88 -0.18 -1.01 16 3 C 0.21 3.53 6.21 -82.27 -0.51 3.02 16 4 C -0.32 -5.10 9.42 -39.31 -0.37 -5.47 16 5 C 0.22 4.01 6.20 -82.26 -0.51 3.50 16 6 C -0.07 -1.02 6.36 -27.88 -0.18 -1.19 16 7 C -0.14 -2.27 9.78 37.16 0.36 -1.91 16 8 N -0.54 -12.13 8.71 -10.15 -0.09 -12.22 16 9 C 0.58 12.83 8.17 -322.80 -2.64 10.19 16 10 N -0.56 -12.48 2.48 -169.79 -0.42 -12.90 16 11 C 0.26 6.60 4.59 -5.19 -0.02 6.58 16 12 C -0.51 -14.09 7.85 -34.44 -0.27 -14.36 16 13 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 16 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.15 2.83 3.27 -67.92 -0.22 2.61 16 21 C -0.16 -2.67 9.17 37.16 0.34 -2.33 16 22 C -0.15 -2.86 8.50 37.16 0.32 -2.54 16 23 N -0.59 -11.43 8.43 -10.16 -0.09 -11.51 16 24 H 0.07 0.86 7.98 -51.93 -0.41 0.44 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 0.74 7.94 -51.93 -0.41 0.33 16 29 H 0.13 1.61 7.95 -52.49 -0.42 1.19 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 0.86 7.94 -51.93 -0.41 0.45 16 32 H 0.08 1.53 7.98 -51.93 -0.41 1.12 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.03 0.88 6.41 -51.93 -0.33 0.55 16 36 H 0.05 1.34 7.34 -51.93 -0.38 0.96 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.09 1.68 6.76 -51.93 -0.35 1.33 16 39 H 0.06 1.19 6.65 -51.93 -0.35 0.84 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.61 6.94 -51.93 -0.36 1.25 16 LS Contribution 356.18 15.07 5.37 5.37 Total: -1.00 -30.50 356.18 -10.73 -41.24 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.60 Total: 1.09 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.62 Total: -2.50 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.14 Total: -61.95 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.50 -10.73 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310776125.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.965 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds