Wall clock time and date at job start Mon Mar 30 2020 07:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50690 * 109.47226 * 2 1 4 4 C 1.38606 * 120.40256 * 124.99996 * 3 2 1 5 5 C 1.38608 * 118.55898 * 180.02562 * 4 3 2 6 6 C 1.50704 * 120.40093 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47061 * 125.02273 * 6 5 4 8 8 N 1.32273 * 119.19912 * 0.02562 * 5 4 3 9 9 C 1.32499 * 120.73804 * 359.97438 * 8 5 4 10 10 N 1.38405 * 119.21460 * 180.02562 * 9 8 5 11 11 C 1.46498 * 120.00241 * 359.72737 * 10 9 8 12 12 C 1.50702 * 109.47425 * 89.99686 * 11 10 9 13 13 H 1.07999 * 119.99972 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99945 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00104 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99887 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46951 * 89.99923 * 16 14 12 18 18 H 1.48499 * 109.47146 * 210.00270 * 16 14 12 19 19 H 1.48504 * 109.46989 * 330.00426 * 16 14 12 20 20 C 1.46499 * 119.99936 * 180.02562 * 10 9 8 21 21 C 1.53004 * 109.47320 * 120.00165 * 20 10 9 22 22 C 1.53010 * 109.47366 * 240.00067 * 20 10 9 23 23 N 1.32277 * 120.40314 * 305.29337 * 3 2 1 24 24 H 1.09002 * 109.46687 * 60.00372 * 1 2 3 25 25 H 1.08996 * 109.47030 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46773 * 300.00200 * 1 2 3 27 27 H 1.09003 * 109.46773 * 239.99800 * 2 1 3 28 28 H 1.09000 * 109.46861 * 120.00383 * 2 1 3 29 29 H 1.08001 * 120.72235 * 0.04258 * 4 3 2 30 30 H 1.08997 * 109.47038 * 245.02513 * 6 5 4 31 31 H 1.09002 * 109.47099 * 5.02441 * 6 5 4 32 32 H 1.09002 * 109.47027 * 60.00124 * 7 6 5 33 33 H 1.08998 * 109.46806 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.46992 * 300.00261 * 7 6 5 35 35 H 1.09002 * 109.47489 * 210.00004 * 11 10 9 36 36 H 1.08996 * 109.47047 * 329.99716 * 11 10 9 37 37 H 0.96996 * 120.00019 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.47376 * 359.97438 * 20 10 9 39 39 H 1.08998 * 109.46756 * 59.99790 * 21 20 10 40 40 H 1.09005 * 109.46997 * 180.02562 * 21 20 10 41 41 H 1.08998 * 109.46853 * 299.99835 * 21 20 10 42 42 H 1.09000 * 109.46705 * 59.99517 * 22 20 10 43 43 H 1.08991 * 109.46973 * 179.97438 * 22 20 10 44 44 H 1.08998 * 109.46636 * 300.00164 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9127 1.8535 0.9793 5 6 3.3500 3.1683 0.9431 6 6 4.3068 3.6828 1.9875 7 6 5.5377 4.2794 1.3019 8 7 2.9165 3.9662 -0.0187 9 6 2.0748 3.5210 -0.9401 10 7 1.6418 4.3831 -1.9325 11 6 2.1095 5.7713 -1.9523 12 6 3.3709 5.8650 -2.7715 13 1 3.7828 4.9791 -3.2318 14 6 3.9985 7.0818 -2.9342 15 7 3.4965 8.1606 -2.3741 16 14 5.5617 7.1980 -3.9503 17 1 5.2117 7.4693 -5.3678 18 1 6.4095 8.3005 -3.4299 19 1 6.3065 5.9163 -3.8611 20 6 0.7108 3.9092 -2.9595 21 6 -0.5737 4.7387 -2.9054 22 6 1.3553 4.0566 -4.3395 23 7 1.6341 2.2716 -0.9312 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.2508 1.1807 1.7536 30 1 3.8149 4.4512 2.5839 31 1 4.6140 2.8615 2.6350 32 1 5.2305 5.1007 0.6544 33 1 6.2295 4.6519 2.0573 34 1 6.0295 3.5109 0.7055 35 1 1.3418 6.4071 -2.3933 36 1 2.3127 6.1007 -0.9334 37 1 3.9378 9.0167 -2.4889 38 1 0.4744 2.8605 -2.7796 39 1 -0.3369 5.7872 -3.0857 40 1 -1.2666 4.3857 -3.6693 41 1 -1.0329 4.6336 -1.9225 42 1 2.2704 3.4657 -4.3780 43 1 0.6627 3.7035 -5.1034 44 1 1.5920 5.1052 -4.5196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310776125.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:17 Heat of formation + Delta-G solvation = 20.335416 kcal Electronic energy + Delta-G solvation = -22539.437230 eV Core-core repulsion = 19490.826544 eV Total energy + Delta-G solvation = -3048.610686 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.84990 -38.73757 -36.41698 -34.95545 -34.79956 -32.61774 -32.01520 -30.78091 -28.85112 -28.02286 -26.30287 -25.08471 -24.27657 -23.52514 -21.44779 -20.64407 -18.58733 -18.28374 -18.14714 -16.59183 -16.20809 -16.18011 -15.59351 -15.46464 -15.04492 -14.93970 -14.82595 -14.55196 -14.26920 -14.01681 -13.51292 -13.33567 -13.21722 -13.01283 -12.90608 -12.78470 -12.55990 -12.47540 -12.34029 -12.25950 -12.16320 -12.08904 -11.93264 -11.67625 -11.52964 -11.38706 -11.02112 -10.66565 -10.57297 -9.69190 -8.61971 -8.08783 -6.25763 0.43944 0.50280 1.34404 1.35631 1.45681 2.05487 2.40362 3.10408 3.13712 3.34586 3.53257 3.81368 4.06803 4.27668 4.28586 4.29914 4.38342 4.45542 4.46681 4.47721 4.54195 4.76185 4.77701 4.80050 4.82472 4.94109 4.96904 4.98634 5.05659 5.11042 5.14044 5.15721 5.21331 5.26362 5.41807 5.44536 5.46293 5.50026 5.68982 5.77947 6.12904 6.25021 6.36464 6.77181 6.90947 7.39364 7.69030 8.91121 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014361 B = 0.006968 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.191023 B = 4017.457319 C = 5330.337969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 C 0.200 3.800 4 C -0.303 4.303 5 C 0.194 3.806 6 C -0.065 4.065 7 C -0.138 4.138 8 N -0.592 5.592 9 C 0.554 3.446 10 N -0.572 5.572 11 C 0.284 3.716 12 C -0.513 4.513 13 H 0.040 0.960 14 C 0.015 3.985 15 N -0.927 5.927 16 Si 0.953 3.047 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.279 1.279 20 C 0.146 3.854 21 C -0.149 4.149 22 C -0.144 4.144 23 N -0.591 5.591 24 H 0.044 0.956 25 H 0.083 0.917 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.172 0.828 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.027 0.973 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.017 0.983 36 H 0.009 0.991 37 H 0.264 0.736 38 H 0.099 0.901 39 H 0.043 0.957 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.032 0.968 43 H 0.086 0.914 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 -15.421 6.210 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 C 0.052 3.948 4 C -0.329 4.329 5 C 0.046 3.954 6 C -0.103 4.103 7 C -0.195 4.195 8 N -0.316 5.316 9 C 0.198 3.802 10 N -0.286 5.286 11 C 0.162 3.838 12 C -0.552 4.552 13 H 0.059 0.941 14 C -0.184 4.184 15 N -0.567 5.567 16 Si 0.779 3.221 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.204 1.204 20 C 0.043 3.957 21 C -0.207 4.207 22 C -0.202 4.202 23 N -0.316 5.316 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.129 0.871 29 H 0.189 0.811 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.047 0.953 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.028 0.972 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.062 0.938 40 H 0.112 0.888 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.105 0.895 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.995 -14.430 5.327 15.892 hybrid contribution 1.235 0.398 -0.063 1.299 sum -2.760 -14.032 5.263 15.239 Atomic orbital electron populations 1.21597 0.93711 1.02649 1.01417 1.20608 0.97192 0.87690 1.04734 1.22076 0.89074 0.96389 0.87294 1.22423 1.07021 0.97864 1.05572 1.22059 0.91604 0.90356 0.91362 1.20590 0.93276 1.02125 0.94264 1.21576 0.97110 1.00236 1.00617 1.67853 1.16746 1.40262 1.06711 1.19545 0.87100 0.86136 0.87391 1.46815 1.46299 1.10354 1.25085 1.18634 0.93121 0.76130 0.95889 1.21507 1.09634 0.93281 1.30753 0.94142 1.25621 1.00331 0.95329 0.97102 1.70035 1.41558 0.99572 1.45554 0.85640 0.79824 0.77393 0.79274 1.19462 1.20467 1.20441 1.21095 0.88354 0.99404 0.86868 1.22070 0.96581 0.99968 1.02078 1.22028 1.00010 1.01882 0.96258 1.67658 1.31713 1.02564 1.29664 0.93657 0.89795 0.93610 0.89395 0.87142 0.81059 0.90036 0.86367 0.95334 0.89884 0.93542 0.96468 0.97250 0.92683 0.88269 0.93803 0.88757 0.93530 0.94882 0.89509 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.78 71.98 0.70 -1.97 16 2 C -0.06 -1.32 6.36 29.85 0.19 -1.13 16 3 C 0.20 6.20 6.21 42.58 0.26 6.47 16 4 C -0.30 -8.90 9.42 22.45 0.21 -8.69 16 5 C 0.19 7.01 6.20 42.58 0.26 7.28 16 6 C -0.06 -1.82 6.36 29.85 0.19 -1.63 16 7 C -0.14 -4.33 9.78 71.98 0.70 -3.62 16 8 N -0.59 -27.42 8.71 -186.03 -1.62 -29.04 16 9 C 0.55 25.40 8.17 261.49 2.14 27.54 16 10 N -0.57 -26.96 2.48 -691.11 -1.72 -28.68 16 11 C 0.28 15.58 4.59 85.63 0.39 15.97 16 12 C -0.51 -29.69 7.85 25.60 0.20 -29.49 16 13 H 0.04 2.41 7.65 -2.91 -0.02 2.39 16 14 C 0.01 0.85 5.46 84.65 0.46 1.31 16 15 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 16 Si 0.95 45.81 29.54 68.60 2.03 47.83 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 20 C 0.15 5.66 3.27 45.00 0.15 5.80 16 21 C -0.15 -5.03 9.17 71.98 0.66 -4.37 16 22 C -0.14 -5.41 8.50 71.99 0.61 -4.80 16 23 N -0.59 -22.97 8.43 -186.04 -1.57 -24.54 16 24 H 0.04 1.08 7.98 -2.39 -0.02 1.06 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.11 1.55 7.94 -2.39 -0.02 1.53 16 29 H 0.17 3.43 7.95 -2.91 -0.02 3.40 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.12 2.26 7.94 -2.39 -0.02 2.24 16 32 H 0.03 1.16 7.98 -2.39 -0.02 1.14 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.02 0.99 6.41 -2.39 -0.02 0.98 16 36 H 0.01 0.58 7.34 -2.39 -0.02 0.56 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.10 3.66 6.76 -2.39 -0.02 3.64 16 39 H 0.04 1.65 6.65 -2.39 -0.02 1.64 16 40 H 0.09 2.46 8.14 -2.38 -0.02 2.45 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.05 2.08 6.94 -2.39 -0.02 2.07 16 Total: -1.00 -71.38 356.18 5.50 -65.89 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.95 Total: 15.55 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 7.14 Total: 8.65 kcal Atomic # 7 Polarization: -133.30 SS G_CDS: -4.62 Total: -137.92 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -71.38 5.50 -65.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310776125.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.221 kcal (2) G-P(sol) polarization free energy of solvation -71.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds