Wall clock time and date at job start Mon Mar 30 2020 07:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47106 * 2 1 4 4 H 1.09005 * 109.47101 * 56.51634 * 3 2 1 5 5 C 1.53004 * 109.47091 * 176.51098 * 3 2 1 6 6 N 1.46493 * 109.47205 * 175.54403 * 5 3 2 7 7 C 1.39855 * 120.00261 * 184.29935 * 6 5 3 8 8 C 1.39606 * 119.83568 * 0.29433 * 7 6 5 9 9 C 1.38057 * 120.54658 * 180.26274 * 8 7 6 10 10 C 1.38730 * 120.22010 * 359.43974 * 9 8 7 11 11 N 1.38871 * 120.16433 * 180.25938 * 10 9 8 12 12 C 1.41559 * 119.67614 * 0.28412 * 10 9 8 13 13 C 1.41023 * 120.26899 * 180.02562 * 12 10 9 14 14 H 1.07999 * 120.00286 * 330.44358 * 13 12 10 15 15 C 1.39888 * 119.99994 * 150.44894 * 13 12 10 16 16 N 1.30898 * 120.00356 * 344.70471 * 15 13 12 17 17 Si 1.86803 * 119.99979 * 164.71157 * 15 13 12 18 18 H 1.48498 * 109.47036 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47083 * 119.99475 * 17 15 13 20 20 H 1.48497 * 109.47091 * 239.99813 * 17 15 13 21 21 C 1.38000 * 119.84211 * 180.02562 * 7 6 5 22 22 N 1.46903 * 109.47350 * 296.51164 * 3 2 1 23 23 C 1.46896 * 111.00149 * 320.44361 * 22 3 2 24 24 C 1.46904 * 110.99946 * 84.40006 * 22 3 2 25 25 H 1.09003 * 109.46529 * 315.08213 * 1 2 3 26 26 H 1.08995 * 109.47655 * 75.07988 * 1 2 3 27 27 H 1.09001 * 109.46802 * 195.08365 * 1 2 3 28 28 H 1.09002 * 109.46803 * 240.00533 * 2 1 3 29 29 H 1.08994 * 109.47165 * 120.00238 * 2 1 3 30 30 H 1.08997 * 109.46869 * 55.54413 * 5 3 2 31 31 H 1.08997 * 109.46800 * 295.54805 * 5 3 2 32 32 H 0.97006 * 120.00353 * 4.29701 * 6 5 3 33 33 H 1.07998 * 119.72802 * 0.02562 * 8 7 6 34 34 H 1.08003 * 119.88976 * 179.72333 * 9 8 7 35 35 H 0.97001 * 119.99793 * 359.97438 * 11 10 9 36 36 H 0.96998 * 120.00414 * 180.02562 * 11 10 9 37 37 H 0.96995 * 120.00102 * 179.97438 * 16 15 13 38 38 H 1.08001 * 120.11572 * 359.97438 * 21 7 6 39 39 H 1.09007 * 109.46836 * 66.53740 * 23 22 3 40 40 H 1.09000 * 109.47110 * 186.53812 * 23 22 3 41 41 H 1.09004 * 109.47085 * 306.54611 * 23 22 3 42 42 H 1.08997 * 109.47276 * 63.04345 * 24 22 3 43 43 H 1.08994 * 109.47186 * 183.05196 * 24 22 3 44 44 H 1.09005 * 109.46577 * 303.05298 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6266 1.9740 0.8572 5 6 3.5676 1.4434 0.0878 6 7 4.0621 2.8182 -0.0192 7 6 5.4381 3.0656 -0.0558 8 6 6.3373 1.9993 0.0036 9 6 7.6986 2.2271 -0.0260 10 6 8.1880 3.5213 -0.1271 11 7 9.5576 3.7486 -0.1622 12 6 7.2846 4.6090 -0.1938 13 6 7.7684 5.9296 -0.2973 14 1 8.7243 6.1898 0.1327 15 6 7.0101 6.9026 -0.9569 16 7 6.0147 6.5451 -1.7281 17 14 7.4180 8.7123 -0.7371 18 1 8.5786 8.8503 0.1789 19 1 7.7538 9.3076 -2.0555 20 1 6.2457 9.4174 -0.1597 21 6 5.9003 4.3620 -0.1562 22 7 1.6204 2.1103 -1.2394 23 6 1.7262 1.2017 -2.3888 24 6 0.2577 2.6444 -1.1141 25 1 -0.3632 0.7278 0.7257 26 1 -0.3634 0.2646 -0.9929 27 1 -0.3633 -0.9923 0.2674 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.9785 0.8451 -0.7254 31 1 3.8768 1.0193 1.0431 32 1 3.4351 3.5570 -0.0647 33 1 5.9650 0.9882 0.0772 34 1 8.3848 1.3946 0.0252 35 1 10.1745 3.0016 -0.1156 36 1 9.8972 4.6545 -0.2325 37 1 5.4887 7.2199 -2.1851 38 1 5.2016 5.1840 -0.2067 39 1 1.0027 0.3935 -2.2808 40 1 1.5217 1.7522 -3.3071 41 1 2.7326 0.7851 -2.4312 42 1 0.2362 3.4064 -0.3351 43 1 -0.0482 3.0856 -2.0627 44 1 -0.4262 1.8372 -0.8516 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388977932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:00 Heat of formation + Delta-G solvation = 35.452629 kcal Electronic energy + Delta-G solvation = -21873.056248 eV Core-core repulsion = 18825.101093 eV Total energy + Delta-G solvation = -3047.955155 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.13107 -37.66999 -34.91302 -33.32169 -32.38970 -31.67443 -29.33649 -28.91896 -27.61457 -26.01561 -24.61998 -23.55540 -22.59822 -21.05389 -19.65198 -19.48348 -16.93764 -16.48007 -16.03899 -15.37493 -15.34032 -14.95190 -14.73732 -14.52377 -13.99642 -13.55202 -13.06483 -12.80019 -12.64834 -12.34996 -12.30639 -12.10458 -11.77638 -11.67205 -11.61596 -11.46456 -11.36051 -11.24367 -10.99074 -10.93346 -10.81179 -10.57541 -10.29381 -9.77807 -9.59737 -9.19781 -8.96790 -8.05087 -7.60938 -7.08701 -6.50609 -5.37951 -3.98039 2.98004 3.19872 3.24296 3.38346 3.59024 4.00704 4.11943 4.48521 4.89447 4.92386 4.92536 5.04105 5.25478 5.31009 5.40861 5.44404 5.50971 5.57278 5.66146 5.75131 5.81600 5.89055 5.93931 5.98565 6.01053 6.09371 6.18968 6.31993 6.45624 6.71972 7.14457 7.18133 7.23890 7.27374 7.41703 7.61963 7.82792 7.98043 8.11299 8.25376 8.56937 8.88890 9.03348 9.11063 9.12249 9.35286 9.44865 10.49709 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019265 B = 0.004580 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.028141 B = 6112.259629 C = 7225.079447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.154 4.154 3 C 0.072 3.928 4 H 0.080 0.920 5 C 0.153 3.847 6 N -0.749 5.749 7 C 0.182 3.818 8 C -0.256 4.256 9 C -0.153 4.153 10 C 0.084 3.916 11 N -0.889 5.889 12 C 0.097 3.903 13 C -0.469 4.469 14 H 0.070 0.930 15 C 0.078 3.922 16 N -0.801 5.801 17 Si 0.899 3.101 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.276 1.276 21 C -0.196 4.196 22 N -0.527 5.527 23 C 0.023 3.977 24 C 0.005 3.995 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.392 0.608 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.373 0.627 36 H 0.388 0.612 37 H 0.273 0.727 38 H 0.112 0.888 39 H 0.028 0.972 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.864 -8.775 1.396 13.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.194 4.194 3 C -0.037 4.037 4 H 0.098 0.902 5 C 0.026 3.974 6 N -0.383 5.383 7 C 0.083 3.917 8 C -0.280 4.280 9 C -0.178 4.178 10 C -0.017 4.017 11 N -0.432 5.432 12 C 0.092 3.908 13 C -0.501 4.501 14 H 0.088 0.912 15 C -0.138 4.138 16 N -0.428 5.428 17 Si 0.724 3.276 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.201 1.201 21 C -0.220 4.220 22 N -0.250 5.250 23 C -0.125 4.125 24 C -0.143 4.143 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.226 0.774 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.198 0.802 36 H 0.216 0.784 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.815 -8.459 1.165 13.010 hybrid contribution -0.298 0.453 -0.011 0.542 sum -10.113 -8.006 1.154 12.950 Atomic orbital electron populations 1.22086 0.96016 1.01492 1.01760 1.22168 0.95990 0.98135 1.03082 1.22068 0.96248 0.92643 0.92733 0.90158 1.20923 0.90629 0.86582 0.99247 1.44107 1.03765 1.05082 1.85348 1.17527 0.82195 0.93736 0.98279 1.19597 0.92248 0.95257 1.20902 1.19696 0.94367 0.93526 1.10187 1.17873 0.83952 0.92984 1.06885 1.41799 1.03678 1.08942 1.88785 1.16958 0.90382 0.91259 0.92184 1.19117 1.04682 0.93497 1.32769 0.91207 1.25713 0.94331 1.00453 0.93292 1.69891 1.16547 1.35090 1.21288 0.86435 0.79271 0.83273 0.78615 1.18819 1.20441 1.20122 1.20404 0.95434 0.93026 1.13182 1.62049 1.23657 1.36225 1.03112 1.22447 1.01459 0.95096 0.93547 1.22803 0.89417 0.99746 1.02322 0.92455 0.92093 0.92917 0.90996 0.91268 0.93729 0.93868 0.77392 0.89923 0.89965 0.80223 0.78367 0.91614 0.86996 0.95364 0.91827 0.91206 0.91696 0.91884 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 8.06 37.16 0.30 -1.07 16 2 C -0.15 -1.59 4.88 -26.73 -0.13 -1.72 16 3 C 0.07 0.92 2.06 -67.71 -0.14 0.78 16 4 H 0.08 1.02 7.80 -51.93 -0.41 0.61 16 5 C 0.15 2.45 4.43 -4.04 -0.02 2.44 16 6 N -0.75 -14.96 5.54 -58.64 -0.33 -15.28 16 7 C 0.18 4.37 6.64 -83.77 -0.56 3.82 16 8 C -0.26 -5.99 9.29 -39.14 -0.36 -6.36 16 9 C -0.15 -3.63 9.86 -39.47 -0.39 -4.02 16 10 C 0.08 2.10 6.79 -83.23 -0.56 1.53 16 11 N -0.89 -18.84 8.98 32.75 0.29 -18.54 16 12 C 0.10 2.66 5.53 -106.66 -0.59 2.07 16 13 C -0.47 -12.66 8.40 -37.91 -0.32 -12.98 16 14 H 0.07 1.80 6.82 -52.49 -0.36 1.44 16 15 C 0.08 2.02 5.15 -17.33 -0.09 1.93 16 16 N -0.80 -21.69 11.15 55.55 0.62 -21.07 16 17 Si 0.90 19.47 29.59 -169.99 -5.03 14.44 16 18 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 C -0.20 -5.24 8.47 -38.75 -0.33 -5.57 16 22 N -0.53 -6.97 4.40 -243.17 -1.07 -8.04 16 23 C 0.02 0.27 8.16 60.06 0.49 0.76 16 24 C 0.01 0.06 9.11 60.07 0.55 0.60 16 25 H 0.06 0.50 7.53 -51.93 -0.39 0.11 16 26 H 0.06 0.54 4.87 -51.93 -0.25 0.28 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.75 6.22 -51.93 -0.32 0.43 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.76 6.77 -51.93 -0.35 0.40 16 31 H 0.04 0.69 8.11 -51.93 -0.42 0.27 16 32 H 0.39 7.84 8.24 -40.82 -0.34 7.50 16 33 H 0.08 1.76 6.68 -52.49 -0.35 1.41 16 34 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 35 H 0.37 6.70 8.83 -40.82 -0.36 6.34 16 36 H 0.39 8.08 7.11 -40.82 -0.29 7.79 16 37 H 0.27 6.82 8.30 -40.82 -0.34 6.48 16 38 H 0.11 3.13 6.45 -52.49 -0.34 2.79 16 39 H 0.03 0.29 5.15 -51.93 -0.27 0.02 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.93 6.95 -51.93 -0.36 0.57 16 42 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 43 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 44 H 0.04 0.40 3.90 -51.93 -0.20 0.20 16 LS Contribution 336.27 15.07 5.07 5.07 Total: -1.00 -29.17 336.27 -9.27 -38.45 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -6.68 Total: 22.77 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -2.15 Total: -17.80 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -0.48 Total: -62.93 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.17 -9.27 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388977932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.899 kcal (2) G-P(sol) polarization free energy of solvation -29.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds