Wall clock time and date at job start Mon Mar 30 2020 07:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47106 * 2 1 4 4 H 1.09005 * 109.47101 * 56.51634 * 3 2 1 5 5 C 1.53004 * 109.47091 * 176.51098 * 3 2 1 6 6 N 1.46493 * 109.47205 * 175.54403 * 5 3 2 7 7 C 1.39855 * 120.00261 * 184.29935 * 6 5 3 8 8 C 1.39606 * 119.83568 * 0.29433 * 7 6 5 9 9 C 1.38057 * 120.54658 * 180.26274 * 8 7 6 10 10 C 1.38730 * 120.22010 * 359.43974 * 9 8 7 11 11 N 1.38871 * 120.16433 * 180.25938 * 10 9 8 12 12 C 1.41559 * 119.67614 * 0.28412 * 10 9 8 13 13 C 1.41023 * 120.26899 * 180.02562 * 12 10 9 14 14 H 1.07999 * 120.00286 * 330.44358 * 13 12 10 15 15 C 1.39888 * 119.99994 * 150.44894 * 13 12 10 16 16 N 1.30898 * 120.00356 * 344.70471 * 15 13 12 17 17 Si 1.86803 * 119.99979 * 164.71157 * 15 13 12 18 18 H 1.48498 * 109.47036 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47083 * 119.99475 * 17 15 13 20 20 H 1.48497 * 109.47091 * 239.99813 * 17 15 13 21 21 C 1.38000 * 119.84211 * 180.02562 * 7 6 5 22 22 N 1.46903 * 109.47350 * 296.51164 * 3 2 1 23 23 C 1.46896 * 111.00149 * 320.44361 * 22 3 2 24 24 C 1.46904 * 110.99946 * 84.40006 * 22 3 2 25 25 H 1.09003 * 109.46529 * 315.08213 * 1 2 3 26 26 H 1.08995 * 109.47655 * 75.07988 * 1 2 3 27 27 H 1.09001 * 109.46802 * 195.08365 * 1 2 3 28 28 H 1.09002 * 109.46803 * 240.00533 * 2 1 3 29 29 H 1.08994 * 109.47165 * 120.00238 * 2 1 3 30 30 H 1.08997 * 109.46869 * 55.54413 * 5 3 2 31 31 H 1.08997 * 109.46800 * 295.54805 * 5 3 2 32 32 H 0.97006 * 120.00353 * 4.29701 * 6 5 3 33 33 H 1.07998 * 119.72802 * 0.02562 * 8 7 6 34 34 H 1.08003 * 119.88976 * 179.72333 * 9 8 7 35 35 H 0.97001 * 119.99793 * 359.97438 * 11 10 9 36 36 H 0.96998 * 120.00414 * 180.02562 * 11 10 9 37 37 H 0.96995 * 120.00102 * 179.97438 * 16 15 13 38 38 H 1.08001 * 120.11572 * 359.97438 * 21 7 6 39 39 H 1.09007 * 109.46836 * 66.53740 * 23 22 3 40 40 H 1.09000 * 109.47110 * 186.53812 * 23 22 3 41 41 H 1.09004 * 109.47085 * 306.54611 * 23 22 3 42 42 H 1.08997 * 109.47276 * 63.04345 * 24 22 3 43 43 H 1.08994 * 109.47186 * 183.05196 * 24 22 3 44 44 H 1.09005 * 109.46577 * 303.05298 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6266 1.9740 0.8572 5 6 3.5676 1.4434 0.0878 6 7 4.0621 2.8182 -0.0192 7 6 5.4381 3.0656 -0.0558 8 6 6.3373 1.9993 0.0036 9 6 7.6986 2.2271 -0.0260 10 6 8.1880 3.5213 -0.1271 11 7 9.5576 3.7486 -0.1622 12 6 7.2846 4.6090 -0.1938 13 6 7.7684 5.9296 -0.2973 14 1 8.7243 6.1898 0.1327 15 6 7.0101 6.9026 -0.9569 16 7 6.0147 6.5451 -1.7281 17 14 7.4180 8.7123 -0.7371 18 1 8.5786 8.8503 0.1789 19 1 7.7538 9.3076 -2.0555 20 1 6.2457 9.4174 -0.1597 21 6 5.9003 4.3620 -0.1562 22 7 1.6204 2.1103 -1.2394 23 6 1.7262 1.2017 -2.3888 24 6 0.2577 2.6444 -1.1141 25 1 -0.3632 0.7278 0.7257 26 1 -0.3634 0.2646 -0.9929 27 1 -0.3633 -0.9923 0.2674 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.9785 0.8451 -0.7254 31 1 3.8768 1.0193 1.0431 32 1 3.4351 3.5570 -0.0647 33 1 5.9650 0.9882 0.0772 34 1 8.3848 1.3946 0.0252 35 1 10.1745 3.0016 -0.1156 36 1 9.8972 4.6545 -0.2325 37 1 5.4887 7.2199 -2.1851 38 1 5.2016 5.1840 -0.2067 39 1 1.0027 0.3935 -2.2808 40 1 1.5217 1.7522 -3.3071 41 1 2.7326 0.7851 -2.4312 42 1 0.2362 3.4064 -0.3351 43 1 -0.0482 3.0856 -2.0627 44 1 -0.4262 1.8372 -0.8516 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388977932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:59 Heat of formation + Delta-G solvation = 16.037988 kcal Electronic energy + Delta-G solvation = -21873.898130 eV Core-core repulsion = 18825.101093 eV Total energy + Delta-G solvation = -3048.797037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.24015 -39.42389 -36.56011 -35.25423 -33.59834 -32.96033 -31.27385 -30.24012 -28.58683 -27.65409 -26.47829 -24.83044 -23.54745 -22.87436 -21.33186 -20.71158 -18.83072 -17.81077 -17.38654 -17.20435 -16.69362 -16.45009 -16.07640 -15.98072 -15.29139 -14.81210 -14.43974 -14.24673 -14.12271 -13.71553 -13.57948 -13.51104 -13.19190 -13.11189 -12.92502 -12.78110 -12.67154 -12.59370 -12.45318 -12.23529 -12.06295 -11.82013 -11.67699 -11.52859 -11.30160 -11.09132 -10.90886 -9.32295 -9.05927 -8.98656 -8.45276 -7.19894 -5.97993 1.15296 1.42151 1.53082 1.55885 1.69620 2.30074 2.90439 2.99446 3.22710 3.80025 3.87119 3.99650 4.03400 4.14953 4.34569 4.39858 4.51940 4.54815 4.63448 4.67240 4.76268 4.82140 4.84246 4.90609 4.98590 5.01872 5.06703 5.13971 5.21681 5.28286 5.37768 5.38796 5.46961 5.73105 5.94151 6.09604 6.17794 6.22706 6.23975 6.36478 6.61880 7.03085 7.11892 7.21285 7.38571 7.53532 7.70723 8.57069 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019265 B = 0.004580 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.028141 B = 6112.259629 C = 7225.079447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.148 4.148 3 C 0.081 3.919 4 H 0.081 0.919 5 C 0.151 3.849 6 N -0.744 5.744 7 C 0.177 3.823 8 C -0.258 4.258 9 C -0.158 4.158 10 C 0.068 3.932 11 N -0.879 5.879 12 C 0.063 3.937 13 C -0.496 4.496 14 H 0.073 0.927 15 C 0.034 3.966 16 N -0.837 5.837 17 Si 0.973 3.027 18 H -0.258 1.258 19 H -0.272 1.272 20 H -0.272 1.272 21 C -0.221 4.221 22 N -0.554 5.554 23 C 0.026 3.974 24 C 0.007 3.993 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.390 0.610 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.390 0.610 36 H 0.390 0.610 37 H 0.277 0.723 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.444 -9.750 1.774 14.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C -0.028 4.028 4 H 0.099 0.901 5 C 0.026 3.974 6 N -0.377 5.377 7 C 0.076 3.924 8 C -0.282 4.282 9 C -0.182 4.182 10 C -0.034 4.034 11 N -0.423 5.423 12 C 0.058 3.942 13 C -0.528 4.528 14 H 0.091 0.909 15 C -0.178 4.178 16 N -0.465 5.465 17 Si 0.795 3.205 18 H -0.182 1.182 19 H -0.197 1.197 20 H -0.198 1.198 21 C -0.246 4.246 22 N -0.277 5.277 23 C -0.122 4.122 24 C -0.140 4.140 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.223 0.777 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.217 0.783 36 H 0.217 0.783 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.396 -9.472 1.548 14.149 hybrid contribution -0.144 0.642 -0.125 0.670 sum -10.540 -8.830 1.423 13.823 Atomic orbital electron populations 1.22033 0.94541 1.02441 1.01899 1.22106 0.97168 0.96076 1.03427 1.21940 0.93697 0.94491 0.92694 0.90064 1.21113 0.93141 0.84102 0.99062 1.44200 1.02272 1.06827 1.84412 1.17651 0.84183 0.93075 0.97467 1.19902 0.92302 0.96057 1.19977 1.20050 0.95061 0.93897 1.09183 1.18043 0.85209 0.93042 1.07069 1.41669 1.02659 1.09760 1.88249 1.17342 0.91196 0.92391 0.93276 1.19370 1.05360 0.94298 1.33751 0.90940 1.26541 0.93985 1.04826 0.92488 1.69983 1.17688 1.36650 1.22170 0.85304 0.79098 0.77357 0.78708 1.18163 1.19739 1.19765 1.20348 0.95313 0.93590 1.15301 1.61981 1.25267 1.37006 1.03495 1.22400 1.01106 0.95530 0.93171 1.22811 0.88669 1.00226 1.02332 0.92251 0.92011 0.91544 0.91056 0.90553 0.94419 0.93342 0.77683 0.87667 0.87186 0.78257 0.78257 0.91259 0.89352 0.93192 0.92113 0.92811 0.92113 0.91793 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.06 71.98 0.58 -1.64 16 2 C -0.15 -2.71 4.88 30.60 0.15 -2.56 16 3 C 0.08 1.95 2.06 44.92 0.09 2.04 16 4 H 0.08 1.95 7.80 -2.38 -0.02 1.93 16 5 C 0.15 4.73 4.43 86.38 0.38 5.12 16 6 N -0.74 -29.98 5.54 -339.44 -1.88 -31.86 16 7 C 0.18 8.65 6.64 38.13 0.25 8.90 16 8 C -0.26 -11.90 9.29 22.56 0.21 -11.69 16 9 C -0.16 -7.29 9.86 22.34 0.22 -7.07 16 10 C 0.07 3.41 6.79 38.96 0.26 3.68 16 11 N -0.88 -36.68 8.98 -50.31 -0.45 -37.13 16 12 C 0.06 3.53 5.53 -21.18 -0.12 3.41 16 13 C -0.50 -27.41 8.40 23.35 0.20 -27.22 16 14 H 0.07 3.81 6.82 -2.91 -0.02 3.79 16 15 C 0.03 1.79 5.15 85.23 0.44 2.23 16 16 N -0.84 -46.72 11.15 21.82 0.24 -46.47 16 17 Si 0.97 40.53 29.59 68.60 2.03 42.56 16 18 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 21 C -0.22 -12.23 8.47 22.81 0.19 -12.04 16 22 N -0.55 -14.13 4.40 -923.25 -4.06 -18.20 16 23 C 0.03 0.60 8.16 127.69 1.04 1.64 16 24 C 0.01 0.15 9.11 127.69 1.16 1.31 16 25 H 0.06 0.86 7.53 -2.39 -0.02 0.84 16 26 H 0.06 0.90 4.87 -2.39 -0.01 0.89 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 1.33 6.22 -2.39 -0.01 1.31 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 1.24 6.77 -2.39 -0.02 1.23 16 31 H 0.05 1.48 8.11 -2.39 -0.02 1.46 16 32 H 0.39 15.94 8.24 -92.70 -0.76 15.18 16 33 H 0.11 4.29 6.68 -2.91 -0.02 4.27 16 34 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 35 H 0.39 13.41 8.83 -92.71 -0.82 12.59 16 36 H 0.39 16.12 7.11 -92.71 -0.66 15.46 16 37 H 0.28 14.24 8.30 -92.71 -0.77 13.47 16 38 H 0.09 5.21 6.45 -2.91 -0.02 5.19 16 39 H 0.05 0.93 5.15 -2.38 -0.01 0.92 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.05 1.41 6.95 -2.38 -0.02 1.39 16 42 H 0.06 1.29 8.12 -2.39 -0.02 1.27 16 43 H 0.06 1.30 8.11 -2.39 -0.02 1.28 16 44 H 0.06 1.03 3.90 -2.38 -0.01 1.02 16 Total: -1.00 -63.69 336.27 -0.26 -63.95 By element: Atomic # 1 Polarization: 62.24 SS G_CDS: -1.21 Total: 61.03 kcal Atomic # 6 Polarization: -38.96 SS G_CDS: 5.07 Total: -33.89 kcal Atomic # 7 Polarization: -127.50 SS G_CDS: -6.15 Total: -133.65 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -63.69 -0.26 -63.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388977932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.989 kcal (2) G-P(sol) polarization free energy of solvation -63.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds