Wall clock time and date at job start Mon Mar 30 2020 07:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46858 * 2 1 4 4 H 1.09000 * 109.47073 * 305.00032 * 3 2 1 5 5 C 1.53002 * 109.47223 * 65.00216 * 3 2 1 6 6 N 1.46506 * 109.47042 * 185.00154 * 3 2 1 7 7 C 1.34952 * 126.03500 * 275.00265 * 6 3 2 8 8 C 1.35314 * 107.74458 * 179.97438 * 7 6 3 9 9 C 1.39869 * 107.92174 * 359.97438 * 8 7 6 10 10 C 1.50693 * 125.89998 * 179.97438 * 9 8 7 11 11 N 1.46900 * 109.47289 * 94.99956 * 10 9 8 12 12 C 1.48558 * 110.99883 * 290.13034 * 11 10 9 13 13 C 1.54383 * 104.59525 * 200.95680 * 12 11 10 14 14 C 1.54266 * 105.05702 * 23.84938 * 13 12 11 15 15 H 1.09000 * 110.32221 * 240.99963 * 14 13 12 16 16 C 1.50702 * 110.32399 * 118.89779 * 14 13 12 17 17 H 1.08002 * 120.00299 * 241.45683 * 16 14 13 18 18 C 1.37884 * 119.99942 * 61.17242 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.48559 * 111.00516 * 174.70481 * 11 10 9 25 25 N 1.30841 * 108.20104 * 0.26214 * 9 8 7 26 26 H 1.09000 * 109.47433 * 60.00091 * 1 2 3 27 27 H 1.09008 * 109.46966 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47241 * 299.99680 * 1 2 3 29 29 H 1.09001 * 109.46959 * 239.99858 * 2 1 3 30 30 H 1.09000 * 109.47433 * 119.99909 * 2 1 3 31 31 H 1.08999 * 109.47056 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47076 * 300.00018 * 5 3 2 33 33 H 1.09000 * 109.47246 * 59.99922 * 5 3 2 34 34 H 1.08000 * 126.12377 * 0.03151 * 7 6 3 35 35 H 1.07998 * 126.03944 * 179.97438 * 8 7 6 36 36 H 1.08998 * 109.47251 * 334.99830 * 10 9 8 37 37 H 1.09004 * 109.47506 * 214.99787 * 10 9 8 38 38 H 1.08997 * 110.41717 * 82.17880 * 12 11 10 39 39 H 1.09000 * 110.51207 * 319.78136 * 12 11 10 40 40 H 1.09001 * 110.32373 * 264.95852 * 13 12 11 41 41 H 1.08998 * 110.32216 * 142.74225 * 13 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.09007 * 110.40823 * 40.26337 * 24 11 10 44 44 H 1.08999 * 110.41202 * 277.82557 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3074 6 7 3.5000 1.4443 -0.1204 7 6 4.3805 1.3186 0.8946 8 6 5.6262 1.3689 0.3685 9 6 5.5028 1.5303 -1.0153 10 6 6.6408 1.6350 -1.9977 11 7 6.9203 0.3097 -2.5662 12 6 7.5209 -0.5904 -1.5483 13 6 8.2341 -1.6857 -2.3699 14 6 8.5173 -1.0378 -3.7410 15 1 8.0087 -1.5886 -4.5322 16 6 10.0006 -0.9959 -4.0038 17 1 10.4993 -0.0470 -4.1350 18 6 10.7222 -2.1690 -4.0710 19 7 10.1150 -3.3245 -3.9113 20 14 12.5621 -2.1166 -4.3892 21 1 12.9999 -0.7049 -4.5317 22 1 13.2794 -2.7443 -3.2503 23 1 12.8700 -2.8593 -5.6378 24 6 7.9513 0.3943 -3.6325 25 7 4.2288 1.5810 -1.3089 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.9981 3.1544 1.3072 32 1 0.5489 2.1252 1.3970 33 1 2.0698 1.5875 2.1492 34 1 4.1348 1.1983 1.9393 35 1 6.5521 1.2971 0.9198 36 1 7.5291 2.0058 -1.4864 37 1 6.3681 2.3233 -2.7977 38 1 6.7436 -1.0297 -0.9232 39 1 8.2394 -0.0472 -0.9345 40 1 7.5850 -2.5534 -2.4880 41 1 9.1680 -1.9734 -1.8870 42 1 10.6226 -4.1498 -3.9590 43 1 8.7375 1.0931 -3.3464 44 1 7.4980 0.6966 -4.5765 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397651069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:43 Heat of formation + Delta-G solvation = 70.441490 kcal Electronic energy + Delta-G solvation = -21491.757076 eV Core-core repulsion = 18445.319153 eV Total energy + Delta-G solvation = -3046.437924 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.12044 -37.93760 -36.61467 -33.40624 -31.90898 -30.42870 -29.84599 -28.74433 -28.03329 -25.94866 -24.60918 -23.67654 -22.01754 -20.37681 -19.89170 -19.52409 -19.00686 -17.16861 -16.20156 -15.55149 -15.22440 -14.85319 -14.67941 -14.23466 -14.12056 -13.69431 -13.53250 -13.25225 -12.92841 -12.78204 -12.56924 -12.20807 -12.14384 -11.87763 -11.81017 -11.28918 -11.14103 -11.03968 -10.99847 -10.78803 -10.60530 -10.45377 -10.25549 -10.18684 -9.66848 -9.24948 -9.01715 -8.65553 -8.40063 -8.32214 -7.69547 -5.96708 -4.00363 2.05127 2.54113 2.99668 3.32051 3.40174 3.43922 4.25648 4.46219 4.47653 4.72776 4.77321 4.85089 4.90473 4.99506 5.06362 5.14192 5.35921 5.37147 5.47520 5.50591 5.54033 5.70818 5.74380 5.82407 5.88809 5.96773 5.99803 6.04114 6.19802 6.29976 6.40375 6.48962 6.64704 6.84481 6.96317 7.17130 7.21898 7.28924 7.64132 7.75774 7.80548 7.95512 8.00000 8.06862 8.52568 9.03044 9.63312 11.12472 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036473 B = 0.003229 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.508986 B = 8668.769401 C = 8939.793313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.161 3.839 4 H 0.099 0.901 5 C -0.164 4.164 6 N -0.373 5.373 7 C 0.047 3.953 8 C -0.265 4.265 9 C 0.094 3.906 10 C 0.122 3.878 11 N -0.508 5.508 12 C 0.036 3.964 13 C -0.091 4.091 14 C 0.048 3.952 15 H 0.033 0.967 16 C -0.514 4.514 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.887 5.887 20 Si 0.889 3.111 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.041 3.959 25 N -0.280 5.280 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.166 0.834 35 H 0.142 0.858 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.032 0.968 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.259 0.741 43 H 0.036 0.964 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.625 9.474 12.134 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.059 3.941 4 H 0.118 0.882 5 C -0.223 4.223 6 N -0.156 5.156 7 C -0.098 4.098 8 C -0.294 4.294 9 C -0.073 4.073 10 C -0.009 4.009 11 N -0.233 5.233 12 C -0.091 4.091 13 C -0.130 4.130 14 C 0.029 3.971 15 H 0.051 0.949 16 C -0.552 4.552 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.525 5.525 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.086 4.086 25 N -0.102 5.102 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.183 0.817 35 H 0.160 0.840 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.124 9.218 11.024 23.130 hybrid contribution 2.362 0.081 0.991 2.563 sum -15.762 9.300 12.015 21.893 Atomic orbital electron populations 1.21785 0.94443 1.02429 1.02087 1.21976 0.96567 0.95392 1.03596 1.21228 0.75393 0.97535 0.99979 0.88249 1.22226 1.02802 1.01124 0.96100 1.48809 1.05668 1.56516 1.04593 1.22307 0.89883 1.02805 0.94820 1.21402 0.97528 1.16250 0.94259 1.22193 0.92654 0.98488 0.93977 1.20517 0.92157 0.93451 0.94730 1.65383 1.40601 1.07642 1.09635 1.23166 0.96196 0.95513 0.94253 1.22188 0.98338 0.95114 0.97323 1.19365 0.95151 0.88803 0.93763 0.94908 1.21253 0.92655 0.92468 1.48873 0.92642 1.24976 0.98162 0.95597 0.95296 1.70009 1.35455 0.97205 1.49825 0.86589 0.85901 0.78033 0.77784 1.19828 1.21122 1.21069 1.23300 0.91275 1.00861 0.93171 1.77362 1.04386 1.24091 1.04357 0.92284 0.92038 0.92286 0.90680 0.91369 0.91612 0.89971 0.91609 0.81699 0.83984 0.93106 0.90090 0.92343 0.95017 0.93831 0.91543 0.93149 0.94546 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.67 37.16 0.36 -0.61 16 2 C -0.14 -1.22 5.73 -26.73 -0.15 -1.37 16 3 C 0.16 1.53 3.40 -67.93 -0.23 1.30 16 4 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 5 C -0.16 -1.06 8.59 37.16 0.32 -0.74 16 6 N -0.37 -4.96 3.53 -54.86 -0.19 -5.15 16 7 C 0.05 0.58 10.59 -17.22 -0.18 0.40 16 8 C -0.26 -3.83 10.60 -40.01 -0.42 -4.25 16 9 C 0.09 1.58 6.25 -82.41 -0.51 1.07 16 10 C 0.12 2.12 5.38 -4.98 -0.03 2.09 16 11 N -0.51 -10.39 5.36 -231.42 -1.24 -11.63 16 12 C 0.04 0.76 5.86 -2.18 -0.01 0.74 16 13 C -0.09 -2.23 5.75 -25.34 -0.15 -2.37 16 14 C 0.05 1.24 2.99 -90.39 -0.27 0.97 16 15 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 16 C -0.51 -14.22 8.38 -34.44 -0.29 -14.51 16 17 H 0.06 1.51 7.58 -52.49 -0.40 1.11 16 18 C 0.06 1.72 5.08 -17.82 -0.09 1.63 16 19 N -0.89 -25.78 12.34 55.43 0.68 -25.10 16 20 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.04 0.90 6.01 -2.19 -0.01 0.89 16 25 N -0.28 -4.77 12.58 33.67 0.42 -4.35 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.06 0.29 6.56 -51.93 -0.34 -0.05 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.38 6.56 -51.93 -0.34 0.04 16 33 H 0.06 0.38 7.16 -51.93 -0.37 0.01 16 34 H 0.17 1.40 7.26 -52.49 -0.38 1.02 16 35 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.05 0.83 7.88 -51.93 -0.41 0.42 16 37 H 0.08 1.35 8.13 -51.93 -0.42 0.93 16 38 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 39 H 0.03 0.63 7.83 -51.93 -0.41 0.22 16 40 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.07 1.75 7.22 -51.93 -0.38 1.37 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.04 0.79 7.56 -51.92 -0.39 0.39 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 350.46 15.07 5.28 5.28 Total: -1.00 -31.26 350.46 -9.36 -40.63 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.62 Total: -1.28 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -1.67 Total: -14.77 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.33 Total: -46.23 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.26 -9.36 -40.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397651069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.067 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds