Wall clock time and date at job start Mon Mar 30 2020 07:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46858 * 2 1 4 4 H 1.09000 * 109.47073 * 305.00032 * 3 2 1 5 5 C 1.53002 * 109.47223 * 65.00216 * 3 2 1 6 6 N 1.46506 * 109.47042 * 185.00154 * 3 2 1 7 7 C 1.34952 * 126.03500 * 275.00265 * 6 3 2 8 8 C 1.35314 * 107.74458 * 179.97438 * 7 6 3 9 9 C 1.39869 * 107.92174 * 359.97438 * 8 7 6 10 10 C 1.50693 * 125.89998 * 179.97438 * 9 8 7 11 11 N 1.46900 * 109.47289 * 94.99956 * 10 9 8 12 12 C 1.48558 * 110.99883 * 290.13034 * 11 10 9 13 13 C 1.54383 * 104.59525 * 200.95680 * 12 11 10 14 14 C 1.54266 * 105.05702 * 23.84938 * 13 12 11 15 15 H 1.09000 * 110.32221 * 240.99963 * 14 13 12 16 16 C 1.50702 * 110.32399 * 118.89779 * 14 13 12 17 17 H 1.08002 * 120.00299 * 241.45683 * 16 14 13 18 18 C 1.37884 * 119.99942 * 61.17242 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.48559 * 111.00516 * 174.70481 * 11 10 9 25 25 N 1.30841 * 108.20104 * 0.26214 * 9 8 7 26 26 H 1.09000 * 109.47433 * 60.00091 * 1 2 3 27 27 H 1.09008 * 109.46966 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47241 * 299.99680 * 1 2 3 29 29 H 1.09001 * 109.46959 * 239.99858 * 2 1 3 30 30 H 1.09000 * 109.47433 * 119.99909 * 2 1 3 31 31 H 1.08999 * 109.47056 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47076 * 300.00018 * 5 3 2 33 33 H 1.09000 * 109.47246 * 59.99922 * 5 3 2 34 34 H 1.08000 * 126.12377 * 0.03151 * 7 6 3 35 35 H 1.07998 * 126.03944 * 179.97438 * 8 7 6 36 36 H 1.08998 * 109.47251 * 334.99830 * 10 9 8 37 37 H 1.09004 * 109.47506 * 214.99787 * 10 9 8 38 38 H 1.08997 * 110.41717 * 82.17880 * 12 11 10 39 39 H 1.09000 * 110.51207 * 319.78136 * 12 11 10 40 40 H 1.09001 * 110.32373 * 264.95852 * 13 12 11 41 41 H 1.08998 * 110.32216 * 142.74225 * 13 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.09007 * 110.40823 * 40.26337 * 24 11 10 44 44 H 1.08999 * 110.41202 * 277.82557 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3074 6 7 3.5000 1.4443 -0.1204 7 6 4.3805 1.3186 0.8946 8 6 5.6262 1.3689 0.3685 9 6 5.5028 1.5303 -1.0153 10 6 6.6408 1.6350 -1.9977 11 7 6.9203 0.3097 -2.5662 12 6 7.5209 -0.5904 -1.5483 13 6 8.2341 -1.6857 -2.3699 14 6 8.5173 -1.0378 -3.7410 15 1 8.0087 -1.5886 -4.5322 16 6 10.0006 -0.9959 -4.0038 17 1 10.4993 -0.0470 -4.1350 18 6 10.7222 -2.1690 -4.0710 19 7 10.1150 -3.3245 -3.9113 20 14 12.5621 -2.1166 -4.3892 21 1 12.9999 -0.7049 -4.5317 22 1 13.2794 -2.7443 -3.2503 23 1 12.8700 -2.8593 -5.6378 24 6 7.9513 0.3943 -3.6325 25 7 4.2288 1.5810 -1.3089 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.9981 3.1544 1.3072 32 1 0.5489 2.1252 1.3970 33 1 2.0698 1.5875 2.1492 34 1 4.1348 1.1983 1.9393 35 1 6.5521 1.2971 0.9198 36 1 7.5291 2.0058 -1.4864 37 1 6.3681 2.3233 -2.7977 38 1 6.7436 -1.0297 -0.9232 39 1 8.2394 -0.0472 -0.9345 40 1 7.5850 -2.5534 -2.4880 41 1 9.1680 -1.9734 -1.8870 42 1 10.6226 -4.1498 -3.9590 43 1 8.7375 1.0931 -3.3464 44 1 7.4980 0.6966 -4.5765 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397651069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:42 Heat of formation + Delta-G solvation = 51.164426 kcal Electronic energy + Delta-G solvation = -21492.592993 eV Core-core repulsion = 18445.319153 eV Total energy + Delta-G solvation = -3047.273840 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.17820 -39.63773 -37.44856 -35.26537 -33.33760 -31.71355 -30.92079 -29.90534 -29.70243 -27.36141 -25.88087 -25.15823 -22.92386 -21.97157 -21.32291 -20.80695 -20.42247 -18.34680 -17.99027 -16.86128 -16.63305 -16.29622 -15.96141 -15.76155 -15.33944 -14.69019 -14.61163 -14.45485 -14.29088 -13.98829 -13.76538 -13.37565 -13.10960 -12.97006 -12.95593 -12.71425 -12.56530 -12.48468 -12.37357 -12.23062 -12.08319 -11.92954 -11.73926 -11.67654 -11.44157 -11.15903 -10.77219 -10.47796 -10.17599 -9.47552 -9.28395 -8.11478 -6.22807 1.00936 1.41893 1.43374 1.55202 1.62875 1.83735 2.44230 3.19267 3.35644 3.49216 3.76221 3.86510 3.96628 4.08216 4.13736 4.22560 4.27656 4.40718 4.44995 4.53688 4.60572 4.64711 4.66577 4.77984 4.80959 4.87323 4.89585 4.97113 5.01305 5.05664 5.10514 5.15859 5.25231 5.29652 5.34109 5.39385 5.62370 5.69386 5.78756 5.87738 5.98466 6.23034 6.26962 6.42070 6.87573 6.88360 7.44947 8.97886 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036473 B = 0.003229 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.508986 B = 8668.769401 C = 8939.793313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.151 3.849 4 H 0.092 0.908 5 C -0.156 4.156 6 N -0.370 5.370 7 C 0.063 3.937 8 C -0.286 4.286 9 C 0.074 3.926 10 C 0.125 3.875 11 N -0.517 5.517 12 C 0.055 3.945 13 C -0.083 4.083 14 C 0.040 3.960 15 H -0.005 1.005 16 C -0.530 4.530 17 H 0.058 0.942 18 C 0.011 3.989 19 N -0.919 5.919 20 Si 0.958 3.042 21 H -0.264 1.264 22 H -0.280 1.280 23 H -0.282 1.282 24 C 0.054 3.946 25 N -0.323 5.323 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.208 0.792 35 H 0.153 0.847 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.023 0.977 41 H 0.043 0.957 42 H 0.260 0.740 43 H 0.042 0.958 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.294 10.787 14.266 24.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.051 3.949 4 H 0.110 0.890 5 C -0.214 4.214 6 N -0.152 5.152 7 C -0.083 4.083 8 C -0.315 4.315 9 C -0.092 4.092 10 C -0.005 4.005 11 N -0.242 5.242 12 C -0.073 4.073 13 C -0.121 4.121 14 C 0.021 3.979 15 H 0.013 0.987 16 C -0.568 4.568 17 H 0.076 0.924 18 C -0.188 4.188 19 N -0.558 5.558 20 Si 0.783 3.217 21 H -0.189 1.189 22 H -0.206 1.206 23 H -0.208 1.208 24 C -0.074 4.074 25 N -0.146 5.146 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.225 0.775 35 H 0.171 0.829 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.809 10.550 13.150 25.259 hybrid contribution 2.445 -0.342 0.334 2.492 sum -16.364 10.208 13.484 23.533 Atomic orbital electron populations 1.21771 0.92338 1.02943 1.03188 1.21922 0.98327 0.94645 1.02112 1.21596 0.73432 0.98168 1.01733 0.89000 1.22219 1.04383 1.00536 0.94274 1.49146 1.07013 1.55236 1.03853 1.22916 0.88905 1.00245 0.96276 1.21629 0.99057 1.17430 0.93414 1.22140 0.92409 0.99816 0.94882 1.20498 0.93233 0.91506 0.95252 1.65324 1.39708 1.09693 1.09479 1.22946 0.96220 0.94396 0.93763 1.21976 0.97199 0.95666 0.97297 1.19332 0.94459 0.90984 0.93141 0.98703 1.21556 0.93641 0.92701 1.48913 0.92426 1.25798 1.02852 0.95179 0.94984 1.70142 1.37259 0.97831 1.50594 0.85509 0.80161 0.78381 0.77621 1.18859 1.20575 1.20786 1.23064 0.91773 0.98286 0.94254 1.77257 1.04955 1.25517 1.06847 0.92369 0.91865 0.89980 0.94155 0.90819 0.91908 0.87615 0.90299 0.77514 0.82905 0.91824 0.89826 0.91586 0.93697 0.95843 0.93812 0.93073 0.93932 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.67 71.98 0.70 -0.86 16 2 C -0.13 -2.17 5.73 30.59 0.18 -1.99 16 3 C 0.15 2.61 3.40 44.99 0.15 2.76 16 4 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 5 C -0.16 -1.47 8.59 71.98 0.62 -0.85 16 6 N -0.37 -9.28 3.53 -327.47 -1.15 -10.43 16 7 C 0.06 1.37 10.59 83.54 0.88 2.26 16 8 C -0.29 -7.74 10.60 21.99 0.23 -7.51 16 9 C 0.07 2.42 6.25 43.10 0.27 2.69 16 10 C 0.12 4.26 5.38 85.55 0.46 4.72 16 11 N -0.52 -21.14 5.36 -886.07 -4.75 -25.89 16 12 C 0.05 2.26 5.86 86.45 0.51 2.76 16 13 C -0.08 -4.17 5.75 31.49 0.18 -3.99 16 14 C 0.04 2.13 2.99 -10.64 -0.03 2.09 16 15 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 16 C -0.53 -29.78 8.38 25.60 0.21 -29.56 16 17 H 0.06 3.14 7.58 -2.91 -0.02 3.12 16 18 C 0.01 0.60 5.08 84.66 0.43 1.03 16 19 N -0.92 -54.77 12.34 21.45 0.26 -54.51 16 20 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 21 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 C 0.05 2.37 6.01 86.45 0.52 2.89 16 25 N -0.32 -10.90 12.58 -47.39 -0.60 -11.49 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.08 0.52 6.56 -2.39 -0.02 0.50 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.11 0.53 6.56 -2.39 -0.02 0.51 16 33 H 0.08 0.56 7.16 -2.39 -0.02 0.55 16 34 H 0.21 2.59 7.26 -2.91 -0.02 2.57 16 35 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 36 H 0.06 1.99 7.88 -2.39 -0.02 1.98 16 37 H 0.08 2.76 8.13 -2.39 -0.02 2.74 16 38 H 0.07 2.63 8.12 -2.39 -0.02 2.62 16 39 H 0.04 1.74 7.83 -2.39 -0.02 1.72 16 40 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.04 2.37 7.22 -2.39 -0.02 2.35 16 42 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 43 H 0.04 1.82 7.56 -2.38 -0.02 1.80 16 44 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -69.42 350.46 2.05 -67.37 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.95 Total: 12.36 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 5.31 Total: -23.55 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -6.24 Total: -102.32 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -69.42 2.05 -67.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397651069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.532 kcal (2) G-P(sol) polarization free energy of solvation -69.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds