Wall clock time and date at job start Mon Mar 30 2020 08:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47304 * 2 1 4 4 N 1.40081 * 126.03935 * 84.73080 * 3 2 1 5 5 C 1.30839 * 108.21182 * 180.02562 * 4 3 2 6 6 C 1.50693 * 125.90315 * 180.02562 * 5 4 3 7 7 C 1.39871 * 108.19829 * 359.97438 * 5 4 3 8 8 C 1.34950 * 126.03847 * 265.01989 * 3 2 1 9 9 C 1.50698 * 126.12577 * 359.97438 * 8 3 2 10 10 N 1.46904 * 109.47255 * 84.83940 * 9 8 3 11 11 C 1.46848 * 111.00023 * 75.73912 * 10 9 8 12 12 C 1.53041 * 109.51998 * 185.84235 * 11 10 9 13 13 C 1.53115 * 109.27851 * 300.81692 * 12 11 10 14 14 C 1.53122 * 109.16163 * 57.65621 * 13 12 11 15 15 H 1.08998 * 109.50160 * 62.32061 * 14 13 12 16 16 C 1.50698 * 109.50481 * 182.40476 * 14 13 12 17 17 H 1.08006 * 119.99874 * 120.00168 * 16 14 13 18 18 C 1.37870 * 119.99939 * 300.00125 * 16 14 13 19 19 N 1.31511 * 120.00310 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99910 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47214 * 90.00165 * 20 18 16 22 22 H 1.48499 * 109.46759 * 209.99806 * 20 18 16 23 23 H 1.48497 * 109.47111 * 329.99698 * 20 18 16 24 24 C 1.46844 * 110.99817 * 199.95090 * 10 9 8 25 25 H 1.09007 * 109.46809 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47158 * 299.99594 * 1 2 3 27 27 H 1.09000 * 109.47153 * 60.00039 * 1 2 3 28 28 H 1.09001 * 109.47015 * 239.99910 * 2 1 3 29 29 H 1.08996 * 109.47775 * 120.00336 * 2 1 3 30 30 H 1.09006 * 109.47243 * 269.97356 * 6 5 4 31 31 H 1.09002 * 109.47149 * 29.96846 * 6 5 4 32 32 H 1.08999 * 109.47551 * 149.97226 * 6 5 4 33 33 H 1.07996 * 126.04049 * 179.97438 * 7 5 4 34 34 H 1.09008 * 109.46839 * 204.83812 * 9 8 3 35 35 H 1.09001 * 109.47206 * 324.83503 * 9 8 3 36 36 H 1.09000 * 109.46152 * 305.85553 * 11 10 9 37 37 H 1.08996 * 109.46559 * 65.82509 * 11 10 9 38 38 H 1.08998 * 109.50389 * 60.76185 * 12 11 10 39 39 H 1.09001 * 109.49816 * 180.87448 * 12 11 10 40 40 H 1.08995 * 109.52413 * 177.56111 * 13 12 11 41 41 H 1.08998 * 109.52131 * 297.68984 * 13 12 11 42 42 H 0.97001 * 120.00229 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.46247 * 294.17182 * 24 10 9 44 44 H 1.08993 * 109.46999 * 54.14163 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1950 2.1928 1.1279 5 6 2.6444 3.3551 0.7290 6 6 2.9725 4.5277 1.6167 7 6 2.7687 3.3207 -0.6637 8 6 2.3723 2.0981 -1.0871 9 6 2.3364 1.6213 -2.5162 10 7 0.9863 1.8132 -3.0627 11 6 0.7420 3.2266 -3.3774 12 6 -0.7158 3.4107 -3.8051 13 6 -0.9965 2.5393 -5.0324 14 6 -0.6880 1.0784 -4.6928 15 1 -1.3469 0.7442 -3.8914 16 6 -0.9052 0.2215 -5.9132 17 1 -0.0869 -0.3521 -6.3229 18 6 -2.1486 0.1696 -6.5067 19 7 -3.1452 0.8675 -6.0075 20 14 -2.4180 -0.8933 -8.0191 21 1 -2.8361 -2.2550 -7.5991 22 1 -3.4778 -0.2893 -8.8660 23 1 -1.1545 -0.9804 -8.7943 24 6 0.7690 0.9619 -4.2393 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.0868 5.1517 1.7367 31 1 3.2965 4.1654 2.5924 32 1 3.7715 5.1144 1.1634 33 1 3.1150 4.1289 -1.2909 34 1 3.0524 2.1920 -3.1078 35 1 2.5962 0.5633 -2.5529 36 1 0.9413 3.8348 -2.4951 37 1 1.4005 3.5371 -4.1886 38 1 -1.3747 3.1134 -2.9892 39 1 -0.8927 4.4572 -4.0535 40 1 -2.0451 2.6341 -5.3143 41 1 -0.3660 2.8627 -5.8606 42 1 -4.0201 0.8307 -6.4248 43 1 1.4273 1.2831 -5.0465 44 1 0.9878 -0.0747 -3.9831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397684904.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:13 Heat of formation + Delta-G solvation = 61.879071 kcal Electronic energy + Delta-G solvation = -22371.304888 eV Core-core repulsion = 19324.495670 eV Total energy + Delta-G solvation = -3046.809218 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.13155 -38.15568 -34.72016 -33.94628 -32.12863 -31.02322 -30.09533 -29.48916 -27.37664 -25.84022 -24.95460 -22.95784 -22.10457 -21.42935 -20.19222 -18.85719 -18.62400 -16.57374 -16.36663 -15.40537 -14.86453 -14.59523 -14.49650 -14.07993 -14.00032 -13.42836 -13.34039 -13.05021 -13.01060 -12.69135 -12.53614 -12.26383 -12.01765 -11.96285 -11.75701 -11.61152 -11.28070 -11.00841 -10.98014 -10.72008 -10.66813 -10.33551 -10.12181 -9.86226 -9.51117 -9.16602 -8.85303 -8.73916 -8.34445 -8.28321 -7.76828 -6.00120 -4.06820 2.05300 2.69594 2.93218 3.28541 3.35775 3.38176 4.36424 4.53196 4.61478 4.82517 5.06400 5.13008 5.21592 5.30068 5.33129 5.41452 5.58711 5.61028 5.71232 5.75638 5.79272 5.83359 5.88418 5.96686 6.05129 6.09316 6.24019 6.31876 6.40990 6.45126 6.47001 6.70458 6.72508 6.88077 6.90941 7.17657 7.24897 7.34905 7.59734 7.69074 7.74781 7.96814 8.04070 8.14689 8.44212 8.97176 9.57850 11.05643 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027879 B = 0.004335 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.094342 B = 6457.365940 C = 6854.676926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.135 3.865 3 N -0.355 5.355 4 N -0.304 5.304 5 C 0.066 3.934 6 C -0.068 4.068 7 C -0.277 4.277 8 C 0.115 3.885 9 C 0.110 3.890 10 N -0.532 5.532 11 C 0.063 3.937 12 C -0.116 4.116 13 C -0.111 4.111 14 C 0.057 3.943 15 H 0.033 0.967 16 C -0.516 4.516 17 H 0.053 0.947 18 C 0.064 3.936 19 N -0.887 5.887 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.068 3.932 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.140 0.860 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.025 0.975 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.030 0.970 42 H 0.260 0.740 43 H 0.021 0.979 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.608 3.588 10.508 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 N -0.137 5.137 4 N -0.127 5.127 5 C -0.100 4.100 6 C -0.127 4.127 7 C -0.307 4.307 8 C -0.014 4.014 9 C -0.020 4.020 10 N -0.257 5.257 11 C -0.065 4.065 12 C -0.154 4.154 13 C -0.149 4.149 14 C 0.038 3.962 15 H 0.051 0.949 16 C -0.555 4.555 17 H 0.071 0.929 18 C -0.137 4.137 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.058 4.058 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.158 0.842 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.681 2.608 11.823 15.502 hybrid contribution 0.551 0.121 -2.225 2.295 sum 10.231 2.729 9.598 14.292 Atomic orbital electron populations 1.22166 0.93647 1.02906 1.04071 1.21603 0.96068 0.77587 1.03351 1.48527 1.49928 1.11834 1.03432 1.77216 1.23993 1.02961 1.08504 1.22180 0.99198 0.94505 0.94100 1.20109 1.01846 0.93031 0.97711 1.21031 1.16950 0.98277 0.94468 1.21012 0.97630 0.92410 0.90382 1.20633 0.92314 1.00876 0.88167 1.61947 1.22815 1.07629 1.33280 1.22084 0.97802 0.88293 0.98339 1.21658 0.94528 0.98894 1.00285 1.21657 1.03643 0.95999 0.93590 1.18644 0.88888 0.92770 0.95857 0.94851 1.21130 0.95583 1.26796 1.11981 0.92859 1.24922 0.96085 0.95555 0.97181 1.69888 1.01436 1.40746 1.40513 0.86641 0.77859 0.80625 0.83122 1.20722 1.21269 1.20014 1.22366 1.00811 0.94613 0.88057 0.91015 0.92403 0.89905 0.89050 0.89775 0.90836 0.91352 0.90782 0.84247 0.92511 0.90188 0.91905 0.95728 0.92302 0.93515 0.89133 0.95129 0.93036 0.96028 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.13 1.71 7.02 -4.05 -0.03 1.68 16 3 N -0.36 -5.38 3.61 -57.15 -0.21 -5.59 16 4 N -0.30 -4.85 12.57 33.67 0.42 -4.43 16 5 C 0.07 0.94 7.22 -82.41 -0.59 0.34 16 6 C -0.07 -0.69 10.45 36.00 0.38 -0.31 16 7 C -0.28 -3.98 9.75 -40.01 -0.39 -4.37 16 8 C 0.11 1.72 5.98 -82.26 -0.49 1.23 16 9 C 0.11 1.60 5.16 -4.97 -0.03 1.58 16 10 N -0.53 -9.27 4.57 -236.11 -1.08 -10.35 16 11 C 0.06 1.09 5.29 -3.83 -0.02 1.07 16 12 C -0.12 -2.25 6.09 -26.65 -0.16 -2.42 16 13 C -0.11 -2.57 5.02 -26.61 -0.13 -2.70 16 14 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 15 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 16 C -0.52 -13.72 8.56 -34.44 -0.29 -14.02 16 17 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -24.89 11.35 55.43 0.63 -24.26 16 20 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.07 1.36 4.65 -3.83 -0.02 1.34 16 25 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.09 1.05 7.01 -51.93 -0.36 0.68 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.06 0.78 8.00 -51.92 -0.42 0.36 16 35 H 0.08 1.08 6.84 -51.93 -0.36 0.72 16 36 H 0.06 1.03 6.78 -51.93 -0.35 0.68 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.09 2.37 6.15 -51.93 -0.32 2.05 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -29.23 348.63 -9.38 -38.62 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.68 Total: 0.59 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -1.71 Total: -15.68 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.23 Total: -44.63 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.23 -9.38 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397684904.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.497 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds