Wall clock time and date at job start Mon Mar 30 2020 08:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47304 * 2 1 4 4 N 1.40081 * 126.03935 * 84.73080 * 3 2 1 5 5 C 1.30839 * 108.21182 * 180.02562 * 4 3 2 6 6 C 1.50693 * 125.90315 * 180.02562 * 5 4 3 7 7 C 1.39871 * 108.19829 * 359.97438 * 5 4 3 8 8 C 1.34950 * 126.03847 * 265.01989 * 3 2 1 9 9 C 1.50698 * 126.12577 * 359.97438 * 8 3 2 10 10 N 1.46904 * 109.47255 * 84.83940 * 9 8 3 11 11 C 1.46848 * 111.00023 * 75.73912 * 10 9 8 12 12 C 1.53041 * 109.51998 * 185.84235 * 11 10 9 13 13 C 1.53115 * 109.27851 * 300.81692 * 12 11 10 14 14 C 1.53122 * 109.16163 * 57.65621 * 13 12 11 15 15 H 1.08998 * 109.50160 * 62.32061 * 14 13 12 16 16 C 1.50698 * 109.50481 * 182.40476 * 14 13 12 17 17 H 1.08006 * 119.99874 * 120.00168 * 16 14 13 18 18 C 1.37870 * 119.99939 * 300.00125 * 16 14 13 19 19 N 1.31511 * 120.00310 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99910 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47214 * 90.00165 * 20 18 16 22 22 H 1.48499 * 109.46759 * 209.99806 * 20 18 16 23 23 H 1.48497 * 109.47111 * 329.99698 * 20 18 16 24 24 C 1.46844 * 110.99817 * 199.95090 * 10 9 8 25 25 H 1.09007 * 109.46809 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47158 * 299.99594 * 1 2 3 27 27 H 1.09000 * 109.47153 * 60.00039 * 1 2 3 28 28 H 1.09001 * 109.47015 * 239.99910 * 2 1 3 29 29 H 1.08996 * 109.47775 * 120.00336 * 2 1 3 30 30 H 1.09006 * 109.47243 * 269.97356 * 6 5 4 31 31 H 1.09002 * 109.47149 * 29.96846 * 6 5 4 32 32 H 1.08999 * 109.47551 * 149.97226 * 6 5 4 33 33 H 1.07996 * 126.04049 * 179.97438 * 7 5 4 34 34 H 1.09008 * 109.46839 * 204.83812 * 9 8 3 35 35 H 1.09001 * 109.47206 * 324.83503 * 9 8 3 36 36 H 1.09000 * 109.46152 * 305.85553 * 11 10 9 37 37 H 1.08996 * 109.46559 * 65.82509 * 11 10 9 38 38 H 1.08998 * 109.50389 * 60.76185 * 12 11 10 39 39 H 1.09001 * 109.49816 * 180.87448 * 12 11 10 40 40 H 1.08995 * 109.52413 * 177.56111 * 13 12 11 41 41 H 1.08998 * 109.52131 * 297.68984 * 13 12 11 42 42 H 0.97001 * 120.00229 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.46247 * 294.17182 * 24 10 9 44 44 H 1.08993 * 109.46999 * 54.14163 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1950 2.1928 1.1279 5 6 2.6444 3.3551 0.7290 6 6 2.9725 4.5277 1.6167 7 6 2.7687 3.3207 -0.6637 8 6 2.3723 2.0981 -1.0871 9 6 2.3364 1.6213 -2.5162 10 7 0.9863 1.8132 -3.0627 11 6 0.7420 3.2266 -3.3774 12 6 -0.7158 3.4107 -3.8051 13 6 -0.9965 2.5393 -5.0324 14 6 -0.6880 1.0784 -4.6928 15 1 -1.3469 0.7442 -3.8914 16 6 -0.9052 0.2215 -5.9132 17 1 -0.0869 -0.3521 -6.3229 18 6 -2.1486 0.1696 -6.5067 19 7 -3.1452 0.8675 -6.0075 20 14 -2.4180 -0.8933 -8.0191 21 1 -2.8361 -2.2550 -7.5991 22 1 -3.4778 -0.2893 -8.8660 23 1 -1.1545 -0.9804 -8.7943 24 6 0.7690 0.9619 -4.2393 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.0868 5.1517 1.7367 31 1 3.2965 4.1654 2.5924 32 1 3.7715 5.1144 1.1634 33 1 3.1150 4.1289 -1.2909 34 1 3.0524 2.1920 -3.1078 35 1 2.5962 0.5633 -2.5529 36 1 0.9413 3.8348 -2.4951 37 1 1.4005 3.5371 -4.1886 38 1 -1.3747 3.1134 -2.9892 39 1 -0.8927 4.4572 -4.0535 40 1 -2.0451 2.6341 -5.3143 41 1 -0.3660 2.8627 -5.8606 42 1 -4.0201 0.8307 -6.4248 43 1 1.4273 1.2831 -5.0465 44 1 0.9878 -0.0747 -3.9831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397684904.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:13 Heat of formation + Delta-G solvation = 45.198289 kcal Electronic energy + Delta-G solvation = -22372.028221 eV Core-core repulsion = 19324.495670 eV Total energy + Delta-G solvation = -3047.532551 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.21797 -39.69431 -35.94999 -35.48344 -33.80823 -32.14329 -31.67674 -30.84554 -28.35174 -27.13904 -26.89164 -24.01450 -23.63955 -23.11745 -21.26550 -20.34662 -19.95661 -18.40855 -17.58839 -16.87955 -16.45788 -15.96764 -15.72835 -15.39895 -15.29936 -14.93138 -14.47125 -14.43218 -14.22398 -14.05435 -13.79689 -13.72605 -13.39080 -13.03349 -12.92984 -12.84801 -12.76371 -12.67728 -12.55050 -12.32719 -12.06175 -11.83990 -11.69912 -11.42616 -11.36082 -10.89797 -10.64976 -10.36808 -10.00212 -9.39286 -9.15045 -8.06229 -6.20286 0.93515 1.42336 1.43582 1.52961 1.67342 1.86986 2.44240 3.15253 3.21396 3.63821 3.68692 4.02542 4.13236 4.17340 4.19882 4.28495 4.36050 4.41797 4.50998 4.58844 4.64050 4.72076 4.76798 4.81329 4.85913 4.88498 4.91130 4.98612 5.04191 5.10662 5.12962 5.18966 5.30265 5.34725 5.40569 5.53829 5.65454 5.88003 5.95999 6.11065 6.17996 6.23682 6.27696 6.46704 6.88800 6.93236 7.48035 8.98184 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027879 B = 0.004335 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.094342 B = 6457.365940 C = 6854.676926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 N -0.364 5.364 4 N -0.334 5.334 5 C 0.059 3.941 6 C -0.067 4.067 7 C -0.283 4.283 8 C 0.103 3.897 9 C 0.115 3.885 10 N -0.540 5.540 11 C 0.070 3.930 12 C -0.108 4.108 13 C -0.103 4.103 14 C 0.056 3.944 15 H -0.005 1.005 16 C -0.533 4.533 17 H 0.055 0.945 18 C 0.015 3.985 19 N -0.916 5.916 20 Si 0.952 3.048 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.267 1.267 24 C 0.084 3.916 25 H 0.089 0.911 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.157 0.843 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.035 0.965 38 H 0.041 0.959 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.025 0.975 42 H 0.259 0.741 43 H 0.023 0.977 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.491 3.860 10.640 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 N -0.146 5.146 4 N -0.157 5.157 5 C -0.106 4.106 6 C -0.125 4.125 7 C -0.313 4.313 8 C -0.026 4.026 9 C -0.014 4.014 10 N -0.265 5.265 11 C -0.058 4.058 12 C -0.146 4.146 13 C -0.142 4.142 14 C 0.037 3.963 15 H 0.013 0.987 16 C -0.572 4.572 17 H 0.073 0.927 18 C -0.184 4.184 19 N -0.556 5.556 20 Si 0.778 3.222 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.191 1.191 24 C -0.043 4.043 25 H 0.108 0.892 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.175 0.825 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.041 0.959 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.580 2.878 11.966 16.899 hybrid contribution -0.054 0.053 -2.217 2.218 sum 11.526 2.931 9.749 15.378 Atomic orbital electron populations 1.22056 0.94533 1.03420 1.01835 1.21761 0.95217 0.77150 1.04786 1.48735 1.50083 1.12442 1.03370 1.77183 1.25183 1.03974 1.09383 1.22834 0.98070 0.94916 0.94815 1.20247 1.02918 0.91900 0.97456 1.21350 1.16591 0.98475 0.94854 1.21141 0.98179 0.92927 0.90398 1.20644 0.90692 1.02058 0.88023 1.61810 1.25310 1.07336 1.31998 1.22005 0.96016 0.88501 0.99251 1.21550 0.96086 0.99126 0.97852 1.21461 1.01229 0.96399 0.95073 1.18552 0.91045 0.92811 0.93909 0.98706 1.21528 0.95737 1.27087 1.12806 0.92716 1.25695 0.95975 0.96769 0.99975 1.70043 1.01708 1.42025 1.41802 0.85656 0.77872 0.78948 0.79761 1.20266 1.21228 1.19141 1.22015 0.97697 0.95569 0.89033 0.89200 0.93358 0.93170 0.87824 0.88107 0.90060 0.90843 0.88604 0.82493 0.90817 0.89035 0.90387 0.94686 0.94047 0.91544 0.92669 0.95567 0.93213 0.95913 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.28 10.24 71.98 0.74 -3.54 16 2 C 0.13 3.17 7.02 86.38 0.61 3.78 16 3 N -0.36 -10.55 3.61 -334.71 -1.21 -11.76 16 4 N -0.33 -10.24 12.57 -47.39 -0.60 -10.83 16 5 C 0.06 1.56 7.22 43.10 0.31 1.87 16 6 C -0.07 -1.18 10.45 71.23 0.74 -0.44 16 7 C -0.28 -7.42 9.75 21.99 0.21 -7.21 16 8 C 0.10 2.87 5.98 41.41 0.25 3.12 16 9 C 0.11 3.08 5.16 85.56 0.44 3.53 16 10 N -0.54 -18.13 4.57 -900.91 -4.12 -22.25 16 11 C 0.07 2.30 5.29 86.33 0.46 2.76 16 12 C -0.11 -4.19 6.09 30.65 0.19 -4.00 16 13 C -0.10 -4.88 5.02 30.67 0.15 -4.73 16 14 C 0.06 2.74 2.26 -11.49 -0.03 2.71 16 15 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 16 C -0.53 -28.68 8.56 25.60 0.22 -28.46 16 17 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 18 C 0.01 0.80 5.30 84.65 0.45 1.25 16 19 N -0.92 -52.87 11.35 21.44 0.24 -52.63 16 20 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 C 0.08 3.29 4.65 86.33 0.40 3.69 16 25 H 0.09 2.00 8.14 -2.38 -0.02 1.99 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.10 2.21 7.01 -2.39 -0.02 2.20 16 29 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 34 H 0.07 1.77 8.00 -2.38 -0.02 1.75 16 35 H 0.09 2.24 6.84 -2.39 -0.02 2.23 16 36 H 0.08 2.37 6.78 -2.39 -0.02 2.36 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.05 2.99 6.15 -2.39 -0.01 2.98 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 Total: -1.00 -63.91 348.63 2.44 -61.47 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.95 Total: 16.63 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 5.14 Total: -25.68 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -5.68 Total: -97.47 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -63.91 2.44 -61.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397684904.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.670 kcal (2) G-P(sol) polarization free energy of solvation -63.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds