Wall clock time and date at job start Mon Mar 30 2020 07:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46893 * 111.00085 * 2 1 4 4 C 1.50702 * 109.47209 * 179.97438 * 3 2 1 5 5 C 1.38887 * 120.32995 * 90.00302 * 4 3 2 6 6 C 1.38297 * 118.50420 * 180.02562 * 5 4 3 7 7 C 1.39140 * 119.09712 * 359.97438 * 6 5 4 8 8 N 1.39002 * 119.70726 * 180.02562 * 7 6 5 9 9 C 1.46491 * 120.00081 * 185.00358 * 8 7 6 10 10 C 1.50700 * 109.47145 * 266.28410 * 9 8 7 11 11 H 1.07991 * 120.00253 * 4.83507 * 10 9 8 12 12 C 1.37884 * 119.99987 * 184.83526 * 10 9 8 13 13 N 1.31513 * 119.99882 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00163 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46589 * 89.99987 * 14 12 10 16 16 H 1.48491 * 109.47260 * 210.00076 * 14 12 10 17 17 H 1.48502 * 109.46844 * 330.00523 * 14 12 10 18 18 C 1.46506 * 119.99713 * 5.00718 * 8 7 6 19 19 C 1.53007 * 109.46988 * 263.92717 * 18 8 7 20 20 C 1.53001 * 109.46667 * 65.61246 * 19 18 8 21 21 C 1.52999 * 109.46932 * 185.60967 * 19 18 8 22 22 N 1.32397 * 120.58812 * 0.28475 * 7 6 5 23 23 C 1.31972 * 121.61871 * 359.42964 * 22 7 6 24 24 H 1.09002 * 109.47150 * 299.99789 * 1 2 3 25 25 H 1.08994 * 109.47058 * 60.00119 * 1 2 3 26 26 H 1.09001 * 109.47568 * 180.02562 * 1 2 3 27 27 H 1.00903 * 110.99909 * 123.95359 * 2 1 3 28 28 H 1.09004 * 109.47323 * 59.99895 * 3 2 1 29 29 H 1.09000 * 109.47401 * 299.99976 * 3 2 1 30 30 H 1.07997 * 120.74787 * 359.97438 * 5 4 3 31 31 H 1.08001 * 120.45077 * 180.02562 * 6 5 4 32 32 H 1.08994 * 109.47203 * 26.28739 * 9 8 7 33 33 H 1.09012 * 109.46922 * 146.28589 * 9 8 7 34 34 H 0.97000 * 119.99911 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.47104 * 143.93354 * 18 8 7 36 36 H 1.09001 * 109.47586 * 23.92937 * 18 8 7 37 37 H 1.08997 * 109.47047 * 305.61538 * 19 18 8 38 38 H 1.08997 * 109.47240 * 58.45179 * 20 19 18 39 39 H 1.09001 * 109.47298 * 178.44889 * 20 19 18 40 40 H 1.09001 * 109.47307 * 298.45145 * 20 19 18 41 41 H 1.08995 * 109.47211 * 300.00045 * 21 19 18 42 42 H 1.08995 * 109.46949 * 60.00432 * 21 19 18 43 43 H 1.09004 * 109.46724 * 179.97438 * 21 19 18 44 44 H 1.08006 * 119.56913 * 180.29074 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3311 0.0006 5 6 4.2035 1.3123 -1.1978 6 6 5.5852 1.2749 -1.1532 7 6 6.2220 1.2580 0.0838 8 7 7.6103 1.2210 0.1435 9 6 8.2846 1.0924 1.4376 10 6 8.6300 2.4623 1.9623 11 1 8.3045 3.3429 1.4286 12 6 9.3615 2.5913 3.1239 13 7 9.7583 1.5189 3.7737 14 14 9.7902 4.2892 3.7740 15 1 8.7184 4.7531 4.6913 16 1 11.0786 4.2268 4.5097 17 1 9.9142 5.2374 2.6379 18 6 8.3990 1.3106 -1.0879 19 6 8.7694 -0.0970 -1.5599 20 6 7.4999 -0.8505 -1.9619 21 6 9.7081 -0.0005 -2.7641 22 7 5.5173 1.2718 1.2046 23 6 4.1983 1.3129 1.1920 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8306 -0.5261 0.7814 28 1 1.6459 1.8948 0.8900 29 1 1.6460 1.8947 -0.8900 30 1 3.6818 1.3257 -2.1433 31 1 6.1622 1.2598 -2.0661 32 1 7.6239 0.5890 2.1432 33 1 9.1976 0.5094 1.3152 34 1 10.2733 1.6097 4.5907 35 1 9.3082 1.8805 -0.8964 36 1 7.8129 1.8100 -1.8594 37 1 9.2686 -0.6315 -0.7518 38 1 6.9861 -0.3016 -2.7510 39 1 7.7661 -1.8435 -2.3241 40 1 6.8431 -0.9432 -1.0969 41 1 9.2088 0.5340 -3.5722 42 1 10.6125 0.5363 -2.4777 43 1 9.9723 -1.0033 -3.1001 44 1 3.6567 1.3278 2.1263 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723196607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:24 Heat of formation + Delta-G solvation = 35.197838 kcal Electronic energy + Delta-G solvation = -21878.505705 eV Core-core repulsion = 18830.539502 eV Total energy + Delta-G solvation = -3047.966203 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.82790 -37.33474 -35.85698 -34.03455 -32.46911 -31.75953 -30.35450 -27.47987 -26.91808 -26.64172 -24.77869 -23.43995 -23.17642 -21.71647 -20.64816 -19.37529 -16.98023 -16.41839 -16.16477 -15.76259 -14.83866 -14.65484 -14.59682 -14.38454 -14.23283 -13.75958 -13.70104 -13.05893 -12.92697 -12.54536 -12.31531 -12.23102 -12.06124 -11.97216 -11.81157 -11.49803 -11.26302 -11.05823 -10.98669 -10.83633 -10.64868 -10.46383 -10.25319 -10.02807 -9.74005 -9.18427 -8.89198 -8.54029 -8.45939 -8.36901 -6.67387 -5.96200 -4.03119 1.90200 2.05289 3.32331 3.38298 3.41225 3.88277 4.27378 4.47315 4.68966 5.02865 5.13861 5.21308 5.23656 5.26328 5.30087 5.33775 5.37494 5.44273 5.54235 5.65259 5.72584 5.74314 5.82725 5.83556 5.95993 5.97642 6.07037 6.16793 6.31449 6.32482 6.36382 6.55340 6.60229 6.64135 6.81521 6.97694 7.06287 7.27920 7.33058 7.54651 7.89254 8.02975 8.31602 8.40915 8.94327 9.07502 9.60832 11.07973 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013184 B = 0.005458 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.199083 B = 5129.286936 C = 6757.886575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.693 5.693 3 C 0.120 3.880 4 C -0.233 4.233 5 C -0.016 4.016 6 C -0.261 4.261 7 C 0.423 3.577 8 N -0.583 5.583 9 C 0.254 3.746 10 C -0.518 4.518 11 H 0.055 0.945 12 C 0.061 3.939 13 N -0.896 5.896 14 Si 0.894 3.106 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.131 3.869 19 C -0.117 4.117 20 C -0.141 4.141 21 C -0.142 4.142 22 N -0.524 5.524 23 C 0.159 3.841 24 H 0.019 0.981 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.343 0.657 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.045 0.955 33 H 0.029 0.971 34 H 0.262 0.738 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.889 -2.995 -11.338 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.324 5.324 3 C -0.009 4.009 4 C -0.240 4.240 5 C -0.042 4.042 6 C -0.286 4.286 7 C 0.185 3.815 8 N -0.290 5.290 9 C 0.135 3.865 10 C -0.557 4.557 11 H 0.073 0.927 12 C -0.141 4.141 13 N -0.536 5.536 14 Si 0.722 3.278 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.201 1.201 18 C 0.007 3.993 19 C -0.137 4.137 20 C -0.198 4.198 21 C -0.200 4.200 22 N -0.240 5.240 23 C -0.002 4.002 24 H 0.037 0.963 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.161 0.839 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.137 0.863 31 H 0.145 0.855 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.010 -3.140 -11.046 15.234 hybrid contribution -0.349 1.241 0.652 1.444 sum -10.359 -1.900 -10.394 14.797 Atomic orbital electron populations 1.22186 0.88389 1.01566 1.00133 1.60502 1.06922 1.14604 1.50343 1.20566 0.90998 0.89035 1.00340 1.20138 0.95100 1.14294 0.94434 1.20928 0.92998 0.93029 0.97236 1.21497 0.95043 1.14525 0.97581 1.18468 0.85953 0.88519 0.88526 1.47119 1.00536 1.72890 1.08443 1.19243 0.92121 0.96899 0.78239 1.21467 1.33237 0.92744 1.08285 0.92720 1.24906 0.95880 0.96688 0.96580 1.69932 1.38048 1.28021 1.17602 0.86564 0.77674 0.84554 0.78988 1.20676 1.21258 1.20072 1.21446 0.96128 0.95508 0.86233 1.21605 0.96456 0.97625 0.98020 1.21906 0.97545 0.99159 1.01234 1.21758 0.99279 1.01395 0.97561 1.67414 1.07332 1.19733 1.29516 1.22223 0.89219 0.92266 0.96536 0.96251 0.91955 0.91701 0.83950 0.94946 0.91030 0.86267 0.85533 0.93666 0.95348 0.92875 0.90266 0.91634 0.90639 0.92988 0.93555 0.92302 0.92959 0.92541 0.92899 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 60.06 0.64 0.89 16 2 N -0.69 -7.91 6.84 -122.43 -0.84 -8.75 16 3 C 0.12 1.44 5.83 -4.98 -0.03 1.41 16 4 C -0.23 -3.49 5.41 -104.46 -0.57 -4.06 16 5 C -0.02 -0.24 9.85 -39.32 -0.39 -0.62 16 6 C -0.26 -4.37 7.53 -39.22 -0.30 -4.66 16 7 C 0.42 8.62 6.45 -155.02 -1.00 7.62 16 8 N -0.58 -12.42 2.35 -175.20 -0.41 -12.84 16 9 C 0.25 6.58 5.21 -5.20 -0.03 6.56 16 10 C -0.52 -14.59 9.39 -34.44 -0.32 -14.91 16 11 H 0.05 1.57 7.81 -52.49 -0.41 1.16 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 14 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.13 2.28 4.90 -4.03 -0.02 2.26 16 19 C -0.12 -1.76 3.12 -90.62 -0.28 -2.04 16 20 C -0.14 -2.00 7.72 37.16 0.29 -1.71 16 21 C -0.14 -1.71 9.19 37.16 0.34 -1.37 16 22 N -0.52 -11.30 9.10 -12.44 -0.11 -11.41 16 23 C 0.16 2.77 10.85 -17.57 -0.19 2.58 16 24 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.34 3.87 8.81 -39.29 -0.35 3.53 16 28 H 0.03 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.13 1.89 4.39 -52.49 -0.23 1.66 16 32 H 0.05 1.29 7.33 -51.93 -0.38 0.91 16 33 H 0.03 0.77 7.96 -51.92 -0.41 0.36 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 36 H 0.07 1.01 6.05 -51.93 -0.31 0.70 16 37 H 0.08 1.29 8.00 -51.93 -0.42 0.87 16 38 H 0.05 0.66 6.71 -51.93 -0.35 0.31 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.98 6.39 -51.93 -0.33 0.65 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.14 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 353.19 15.07 5.32 5.32 Total: -1.00 -30.64 353.19 -9.66 -40.30 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.39 Total: 2.68 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -1.95 Total: -6.44 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.63 Total: -58.76 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.64 -9.66 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723196607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.497 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds