Wall clock time and date at job start Mon Mar 30 2020 07:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 C 1.52995 * 109.47012 * 119.99516 * 2 1 3 5 5 N 1.46900 * 109.47530 * 176.98708 * 4 2 1 6 6 C 1.46899 * 110.99887 * 291.59354 * 5 4 2 7 7 C 1.50699 * 109.47125 * 160.49142 * 6 5 4 8 8 H 1.08001 * 119.99932 * 4.63594 * 7 6 5 9 9 C 1.37881 * 120.00092 * 184.62742 * 7 6 5 10 10 N 1.31513 * 120.00015 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00023 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47243 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47264 * 120.00023 * 11 9 7 14 14 H 1.48501 * 109.46886 * 239.99985 * 11 9 7 15 15 C 1.46892 * 111.00640 * 167.63528 * 5 4 2 16 16 C 1.50705 * 109.47287 * 293.95791 * 15 5 4 17 17 C 1.39781 * 126.05047 * 260.02368 * 16 15 5 18 18 N 1.30709 * 108.20925 * 179.97438 * 17 16 15 19 19 N 1.40414 * 108.34584 * 359.93146 * 18 17 16 20 20 C 1.34912 * 107.69509 * 0.16734 * 19 18 17 21 21 C 1.51423 * 110.16919 * 179.81800 * 20 19 18 22 22 C 1.54554 * 104.19957 * 343.47960 * 21 20 19 23 23 C 1.47141 * 141.40482 * 180.35800 * 19 18 17 24 24 H 1.08994 * 109.47373 * 300.00366 * 1 2 3 25 25 H 1.08999 * 109.47345 * 60.00732 * 1 2 3 26 26 H 1.09005 * 109.47297 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47373 * 239.99633 * 2 1 3 28 28 H 1.08994 * 109.47325 * 59.99605 * 3 2 1 29 29 H 1.09000 * 109.47179 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46652 * 300.00053 * 3 2 1 31 31 H 1.08999 * 109.47098 * 56.98976 * 4 2 1 32 32 H 1.09000 * 109.47447 * 296.98741 * 4 2 1 33 33 H 1.08991 * 109.47429 * 280.49495 * 6 5 4 34 34 H 1.09003 * 109.47049 * 40.49701 * 6 5 4 35 35 H 0.96994 * 120.00347 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.47634 * 173.95597 * 15 5 4 37 37 H 1.09002 * 109.46833 * 53.95618 * 15 5 4 38 38 H 1.07999 * 125.89805 * 359.89405 * 17 16 15 39 39 H 1.09001 * 110.48535 * 224.79695 * 21 20 19 40 40 H 1.09004 * 110.48667 * 102.15909 * 21 20 19 41 41 H 1.08998 * 110.97019 * 267.02285 * 22 21 20 42 42 H 1.09003 * 111.00198 * 143.27531 * 22 21 20 43 43 H 1.08998 * 110.23272 * 77.88307 * 23 19 18 44 44 H 1.09003 * 110.22395 * 316.01707 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.5071 -0.7846 1.2135 6 6 3.9695 -1.6767 0.1420 7 6 5.4071 -1.3651 -0.1857 8 1 5.9481 -0.6351 0.3982 9 6 6.0318 -2.0122 -1.2308 10 7 5.3730 -2.9008 -1.9420 11 14 7.8139 -1.6265 -1.6365 12 1 8.3248 -0.5983 -0.6946 13 1 8.6287 -2.8616 -1.5112 14 1 7.9050 -1.1124 -3.0267 15 6 4.0481 -1.2000 2.5145 16 6 3.7601 -0.1352 3.5415 17 6 4.6589 0.8343 3.9954 18 7 4.0469 1.5761 4.8806 19 7 2.7320 1.1035 5.0201 20 6 2.5841 0.0513 4.1888 21 6 1.1808 -0.5071 4.2980 22 6 0.6370 0.0893 5.6160 23 6 1.4856 1.3713 5.7548 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6332 -1.7320 1.2767 32 1 1.7214 -0.1770 2.1384 33 1 3.8882 -2.7125 0.4712 34 1 3.3542 -1.5280 -0.7454 35 1 5.8123 -3.3558 -2.6774 36 1 5.1255 -1.3426 2.4313 37 1 3.5802 -2.1358 2.8204 38 1 5.6828 0.9498 3.6717 39 1 1.2066 -1.5954 4.3537 40 1 0.5739 -0.1818 3.4530 41 1 0.8128 -0.5874 6.4522 42 1 -0.4224 0.3302 5.5279 43 1 0.9624 2.2193 5.3131 44 1 1.7020 1.5681 6.8049 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824503484.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:52 Heat of formation + Delta-G solvation = 84.938311 kcal Electronic energy + Delta-G solvation = -22615.087812 eV Core-core repulsion = 19569.278518 eV Total energy + Delta-G solvation = -3045.809294 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50731 -37.40300 -36.22360 -34.00149 -32.52956 -30.83690 -29.16490 -27.94552 -27.07783 -26.59973 -24.86156 -23.32254 -22.15836 -21.04173 -20.48171 -19.14075 -18.64048 -16.69611 -16.28051 -15.50581 -14.78584 -14.55994 -14.41081 -14.06665 -13.84168 -13.78929 -13.57368 -13.38454 -12.88343 -12.55285 -12.25010 -11.99463 -11.86545 -11.80029 -11.76435 -11.47185 -11.17887 -11.13856 -10.88309 -10.72791 -10.52924 -10.36187 -10.24426 -10.02516 -10.00314 -9.44623 -9.11763 -8.93395 -8.34156 -7.97869 -7.05008 -5.94771 -3.94727 2.12002 2.51907 3.14542 3.36018 3.43710 3.48860 4.04963 4.46719 4.50005 4.54747 4.79703 5.08968 5.12168 5.27827 5.39960 5.41276 5.43701 5.46720 5.53281 5.65763 5.70273 5.74855 5.84456 5.92420 5.97715 6.13041 6.25119 6.27598 6.30628 6.36685 6.49832 6.57404 6.64851 6.74481 6.96947 7.05312 7.09264 7.09960 7.37117 7.45114 7.92575 8.09065 8.23636 8.36241 8.67063 9.13868 9.69095 11.15861 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.005585 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.624592 B = 5011.782128 C = 5910.256372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.129 4.129 4 C 0.054 3.946 5 N -0.526 5.526 6 C 0.190 3.810 7 C -0.498 4.498 8 H 0.063 0.937 9 C 0.054 3.946 10 N -0.901 5.901 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.286 1.286 15 C 0.137 3.863 16 C -0.189 4.189 17 C 0.067 3.933 18 N -0.285 5.285 19 N -0.401 5.401 20 C 0.056 3.944 21 C -0.069 4.069 22 C -0.132 4.132 23 C 0.134 3.866 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.015 0.985 32 H 0.068 0.932 33 H -0.014 1.014 34 H 0.037 0.963 35 H 0.259 0.741 36 H 0.087 0.913 37 H 0.021 0.979 38 H 0.188 0.812 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.662 5.340 12.776 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.186 4.186 4 C -0.074 4.074 5 N -0.250 5.250 6 C 0.065 3.935 7 C -0.536 4.536 8 H 0.082 0.918 9 C -0.147 4.147 10 N -0.541 5.541 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.213 1.213 14 H -0.212 1.212 15 C 0.008 3.992 16 C -0.200 4.200 17 C -0.119 4.119 18 N -0.105 5.105 19 N -0.185 5.185 20 C -0.072 4.072 21 C -0.107 4.107 22 C -0.171 4.171 23 C 0.013 3.987 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.033 0.967 32 H 0.086 0.914 33 H 0.004 0.996 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.039 0.961 38 H 0.205 0.795 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.101 0.899 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.361 6.869 13.492 18.929 hybrid contribution 0.640 -1.315 -0.799 1.666 sum -10.721 5.555 12.693 17.519 Atomic orbital electron populations 1.21817 0.96533 1.00901 1.00806 1.21132 0.93568 0.97266 0.99399 1.21612 1.03153 0.94845 0.98990 1.22284 0.90260 0.97216 0.97681 1.62098 1.05734 1.53499 1.03678 1.19796 0.96178 0.88788 0.88753 1.21224 0.96186 1.21973 1.14252 0.91842 1.24970 0.98087 0.95328 0.96276 1.69964 1.36634 1.26994 1.20551 0.86507 0.85091 0.78031 0.78185 1.19638 1.21278 1.21207 1.20238 1.01158 0.91084 0.86703 1.19486 0.91973 1.03928 1.04651 1.23816 1.00337 0.93114 0.94619 1.77269 0.87339 1.23222 1.22712 1.49951 1.08978 1.25468 1.34118 1.21878 0.96356 0.93231 0.95756 1.20988 0.90179 1.01731 0.97835 1.22788 1.00024 0.95795 0.98462 1.22162 0.80468 0.98989 0.97072 0.93593 0.93114 0.93237 0.90463 0.94516 0.90685 0.94475 0.96716 0.91399 0.99631 0.94541 0.93161 0.89423 0.96072 0.79533 0.89064 0.88601 0.89724 0.88391 0.89924 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.19 37.16 0.34 -1.61 16 2 C -0.09 -1.64 2.88 -90.62 -0.26 -1.90 16 3 C -0.13 -2.22 9.06 37.16 0.34 -1.88 16 4 C 0.05 0.97 4.16 -3.83 -0.02 0.95 16 5 N -0.53 -11.10 3.77 -237.53 -0.89 -11.99 16 6 C 0.19 4.84 4.61 -4.98 -0.02 4.81 16 7 C -0.50 -13.76 8.61 -34.44 -0.30 -14.06 16 8 H 0.06 1.75 7.65 -52.49 -0.40 1.35 16 9 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 10 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 11 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.14 2.66 5.29 -4.98 -0.03 2.63 16 16 C -0.19 -3.28 5.29 -105.01 -0.56 -3.84 16 17 C 0.07 1.14 11.95 -17.45 -0.21 0.93 16 18 N -0.29 -4.92 12.70 30.58 0.39 -4.53 16 19 N -0.40 -5.95 4.86 -55.68 -0.27 -6.22 16 20 C 0.06 0.84 6.03 -81.85 -0.49 0.34 16 21 C -0.07 -0.74 6.04 -26.71 -0.16 -0.90 16 22 C -0.13 -0.98 7.17 -25.20 -0.18 -1.16 16 23 C 0.13 1.30 7.77 -2.97 -0.02 1.28 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.56 6.26 -51.93 -0.33 1.23 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.51 7.69 -51.93 -0.40 1.11 16 30 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.01 0.27 8.10 -51.93 -0.42 -0.15 16 32 H 0.07 1.10 3.09 -51.93 -0.16 0.94 16 33 H -0.01 -0.39 8.00 -51.93 -0.42 -0.80 16 34 H 0.04 1.00 5.99 -51.93 -0.31 0.69 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.09 1.82 7.31 -51.93 -0.38 1.44 16 37 H 0.02 0.41 8.12 -51.93 -0.42 -0.02 16 38 H 0.19 2.85 8.06 -52.49 -0.42 2.43 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 1.00 6.69 -51.93 -0.35 0.65 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -32.01 345.67 -8.88 -40.90 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -7.37 Total: -1.12 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -1.66 Total: -12.98 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.04 Total: -48.67 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.01 -8.88 -40.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824503484.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.834 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds