Wall clock time and date at job start Mon Mar 30 2020 07:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 C 1.52995 * 109.47012 * 119.99516 * 2 1 3 5 5 N 1.46900 * 109.47530 * 176.98708 * 4 2 1 6 6 C 1.46899 * 110.99887 * 291.59354 * 5 4 2 7 7 C 1.50699 * 109.47125 * 160.49142 * 6 5 4 8 8 H 1.08001 * 119.99932 * 4.63594 * 7 6 5 9 9 C 1.37881 * 120.00092 * 184.62742 * 7 6 5 10 10 N 1.31513 * 120.00015 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00023 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47243 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47264 * 120.00023 * 11 9 7 14 14 H 1.48501 * 109.46886 * 239.99985 * 11 9 7 15 15 C 1.46892 * 111.00640 * 167.63528 * 5 4 2 16 16 C 1.50705 * 109.47287 * 293.95791 * 15 5 4 17 17 C 1.39781 * 126.05047 * 260.02368 * 16 15 5 18 18 N 1.30709 * 108.20925 * 179.97438 * 17 16 15 19 19 N 1.40414 * 108.34584 * 359.93146 * 18 17 16 20 20 C 1.34912 * 107.69509 * 0.16734 * 19 18 17 21 21 C 1.51423 * 110.16919 * 179.81800 * 20 19 18 22 22 C 1.54554 * 104.19957 * 343.47960 * 21 20 19 23 23 C 1.47141 * 141.40482 * 180.35800 * 19 18 17 24 24 H 1.08994 * 109.47373 * 300.00366 * 1 2 3 25 25 H 1.08999 * 109.47345 * 60.00732 * 1 2 3 26 26 H 1.09005 * 109.47297 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47373 * 239.99633 * 2 1 3 28 28 H 1.08994 * 109.47325 * 59.99605 * 3 2 1 29 29 H 1.09000 * 109.47179 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46652 * 300.00053 * 3 2 1 31 31 H 1.08999 * 109.47098 * 56.98976 * 4 2 1 32 32 H 1.09000 * 109.47447 * 296.98741 * 4 2 1 33 33 H 1.08991 * 109.47429 * 280.49495 * 6 5 4 34 34 H 1.09003 * 109.47049 * 40.49701 * 6 5 4 35 35 H 0.96994 * 120.00347 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.47634 * 173.95597 * 15 5 4 37 37 H 1.09002 * 109.46833 * 53.95618 * 15 5 4 38 38 H 1.07999 * 125.89805 * 359.89405 * 17 16 15 39 39 H 1.09001 * 110.48535 * 224.79695 * 21 20 19 40 40 H 1.09004 * 110.48667 * 102.15909 * 21 20 19 41 41 H 1.08998 * 110.97019 * 267.02285 * 22 21 20 42 42 H 1.09003 * 111.00198 * 143.27531 * 22 21 20 43 43 H 1.08998 * 110.23272 * 77.88307 * 23 19 18 44 44 H 1.09003 * 110.22395 * 316.01707 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.5071 -0.7846 1.2135 6 6 3.9695 -1.6767 0.1420 7 6 5.4071 -1.3651 -0.1857 8 1 5.9481 -0.6351 0.3982 9 6 6.0318 -2.0122 -1.2308 10 7 5.3730 -2.9008 -1.9420 11 14 7.8139 -1.6265 -1.6365 12 1 8.3248 -0.5983 -0.6946 13 1 8.6287 -2.8616 -1.5112 14 1 7.9050 -1.1124 -3.0267 15 6 4.0481 -1.2000 2.5145 16 6 3.7601 -0.1352 3.5415 17 6 4.6589 0.8343 3.9954 18 7 4.0469 1.5761 4.8806 19 7 2.7320 1.1035 5.0201 20 6 2.5841 0.0513 4.1888 21 6 1.1808 -0.5071 4.2980 22 6 0.6370 0.0893 5.6160 23 6 1.4856 1.3713 5.7548 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6332 -1.7320 1.2767 32 1 1.7214 -0.1770 2.1384 33 1 3.8882 -2.7125 0.4712 34 1 3.3542 -1.5280 -0.7454 35 1 5.8123 -3.3558 -2.6774 36 1 5.1255 -1.3426 2.4313 37 1 3.5802 -2.1358 2.8204 38 1 5.6828 0.9498 3.6717 39 1 1.2066 -1.5954 4.3537 40 1 0.5739 -0.1818 3.4530 41 1 0.8128 -0.5874 6.4522 42 1 -0.4224 0.3302 5.5279 43 1 0.9624 2.2193 5.3131 44 1 1.7020 1.5681 6.8049 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824503484.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:51 Heat of formation + Delta-G solvation = 65.013336 kcal Electronic energy + Delta-G solvation = -22615.951824 eV Core-core repulsion = 19569.278518 eV Total energy + Delta-G solvation = -3046.673306 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.66295 -38.98926 -37.18237 -35.55466 -34.52584 -32.18800 -30.21708 -29.20546 -28.87501 -27.87352 -26.22375 -25.16477 -23.00899 -22.71199 -21.62165 -20.44515 -20.01059 -18.54504 -17.48996 -16.88701 -16.48122 -16.16733 -15.81570 -15.22574 -15.21894 -15.03974 -14.75000 -14.50814 -14.15947 -14.10265 -13.74085 -13.56035 -13.09797 -13.02023 -12.96944 -12.76832 -12.53797 -12.50535 -12.46655 -12.24755 -12.03063 -11.96794 -11.72856 -11.61226 -11.39191 -11.15146 -11.04668 -10.52105 -10.05645 -9.28299 -8.78214 -8.13288 -6.21587 0.93337 1.41905 1.42962 1.53279 1.56307 1.81438 2.44668 3.18186 3.23192 3.55136 3.63938 3.86666 3.95226 4.03954 4.20354 4.21920 4.26075 4.41080 4.55301 4.58696 4.59833 4.72353 4.77537 4.87248 4.88453 4.89785 4.98185 5.01646 5.05441 5.09559 5.14014 5.17144 5.19761 5.29394 5.35116 5.43586 5.57697 5.64613 5.74486 5.77644 5.99490 6.18620 6.53653 6.78770 6.87626 6.95129 7.47340 8.97033 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.005585 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.624592 B = 5011.782128 C = 5910.256372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.120 4.120 4 C 0.057 3.943 5 N -0.531 5.531 6 C 0.208 3.792 7 C -0.511 4.511 8 H 0.058 0.942 9 C 0.003 3.997 10 N -0.936 5.936 11 Si 0.962 3.038 12 H -0.265 1.265 13 H -0.279 1.279 14 H -0.281 1.281 15 C 0.147 3.853 16 C -0.222 4.222 17 C 0.054 3.946 18 N -0.311 5.311 19 N -0.399 5.399 20 C 0.064 3.936 21 C -0.075 4.075 22 C -0.113 4.113 23 C 0.118 3.882 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.039 0.961 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.012 0.988 32 H 0.092 0.908 33 H -0.044 1.044 34 H 0.013 0.987 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.020 0.980 38 H 0.190 0.810 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.136 0.864 43 H 0.099 0.901 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.767 6.454 14.368 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 C -0.178 4.178 4 C -0.071 4.071 5 N -0.255 5.255 6 C 0.082 3.918 7 C -0.549 4.549 8 H 0.077 0.923 9 C -0.195 4.195 10 N -0.577 5.577 11 Si 0.787 3.213 12 H -0.189 1.189 13 H -0.205 1.205 14 H -0.207 1.207 15 C 0.018 3.982 16 C -0.234 4.234 17 C -0.131 4.131 18 N -0.132 5.132 19 N -0.183 5.183 20 C -0.066 4.066 21 C -0.113 4.113 22 C -0.152 4.152 23 C -0.001 4.001 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.110 0.890 33 H -0.026 1.026 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.038 0.962 38 H 0.207 0.793 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.154 0.846 43 H 0.117 0.883 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.481 8.006 15.117 21.780 hybrid contribution 1.210 -1.639 -1.221 2.375 sum -12.271 6.368 13.896 19.602 Atomic orbital electron populations 1.21734 0.92999 1.01874 1.02553 1.21133 0.96520 0.96631 0.97274 1.21507 1.00692 0.95152 1.00411 1.22382 0.88029 0.97524 0.99159 1.62045 1.08077 1.51925 1.03480 1.19408 0.95163 0.87868 0.89364 1.21497 0.97331 1.21765 1.14323 0.92348 1.25815 1.02511 0.95056 0.96093 1.70083 1.38524 1.27979 1.21109 0.85442 0.79738 0.78095 0.77998 1.18922 1.20516 1.20673 1.20024 0.99508 0.92122 0.86537 1.19293 0.93804 1.04489 1.05816 1.23931 1.00836 0.93343 0.94971 1.77169 0.89026 1.23914 1.23093 1.50434 1.09147 1.24762 1.33912 1.22429 0.97298 0.92779 0.94098 1.21225 0.87534 1.02292 1.00269 1.22861 1.01432 0.94210 0.96652 1.22727 0.78688 1.01004 0.97665 0.91113 0.92083 0.92709 0.94298 0.92996 0.94389 0.93033 0.97013 0.88972 1.02645 0.96857 0.92925 0.91924 0.96193 0.79319 0.88390 0.87648 0.88558 0.84577 0.88254 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.19 71.98 0.66 -2.67 16 2 C -0.10 -3.33 2.88 -10.80 -0.03 -3.36 16 3 C -0.12 -4.09 9.06 71.98 0.65 -3.44 16 4 C 0.06 2.04 4.16 86.30 0.36 2.40 16 5 N -0.53 -23.37 3.77 -905.40 -3.41 -26.78 16 6 C 0.21 11.23 4.61 85.56 0.39 11.62 16 7 C -0.51 -29.49 8.61 25.60 0.22 -29.27 16 8 H 0.06 3.36 7.65 -2.91 -0.02 3.34 16 9 C 0.00 0.15 5.46 84.66 0.46 0.61 16 10 N -0.94 -57.10 13.29 21.45 0.28 -56.82 16 11 Si 0.96 45.47 29.54 68.60 2.03 47.49 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 15 C 0.15 5.96 5.29 85.56 0.45 6.41 16 16 C -0.22 -7.82 5.29 -20.12 -0.11 -7.93 16 17 C 0.05 1.89 11.95 85.23 1.02 2.91 16 18 N -0.31 -10.60 12.70 -57.15 -0.73 -11.32 16 19 N -0.40 -11.01 4.86 -330.07 -1.60 -12.61 16 20 C 0.06 1.82 6.03 41.69 0.25 2.07 16 21 C -0.07 -1.34 6.04 30.61 0.18 -1.15 16 22 C -0.11 -1.12 7.17 31.59 0.23 -0.90 16 23 C 0.12 1.83 7.77 86.72 0.67 2.50 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 26 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.04 1.63 6.26 -2.39 -0.01 1.62 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.55 7.69 -2.39 -0.02 1.54 16 30 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.01 0.43 8.10 -2.39 -0.02 0.41 16 32 H 0.09 2.84 3.09 -2.39 -0.01 2.84 16 33 H -0.04 -2.58 8.00 -2.39 -0.02 -2.60 16 34 H 0.01 0.78 5.99 -2.39 -0.01 0.77 16 35 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.06 2.79 7.31 -2.39 -0.02 2.77 16 37 H 0.02 0.80 8.12 -2.39 -0.02 0.78 16 38 H 0.19 6.13 8.06 -2.91 -0.02 6.11 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.11 1.74 6.69 -2.38 -0.02 1.72 16 41 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -72.94 345.67 2.96 -69.99 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.96 Total: 10.25 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 5.42 Total: -20.20 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -5.45 Total: -107.53 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -72.94 2.96 -69.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824503484.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.999 kcal (2) G-P(sol) polarization free energy of solvation -72.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds