Wall clock time and date at job start Mon Mar 30 2020 07:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47128 * 2 1 4 4 C 1.52995 * 109.47111 * 120.00434 * 2 1 3 5 5 H 1.09002 * 109.47082 * 299.99427 * 4 2 1 6 6 C 1.53003 * 109.47152 * 59.99586 * 4 2 1 7 7 N 1.46509 * 109.46956 * 179.97438 * 4 2 1 8 8 N 1.40117 * 126.49412 * 299.68614 * 7 4 2 9 9 N 1.28664 * 108.93892 * 179.87148 * 8 7 4 10 10 C 1.34849 * 109.63128 * 0.40063 * 9 8 7 11 11 C 1.41494 * 126.02010 * 179.78791 * 10 9 8 12 12 H 1.07994 * 119.99629 * 172.77585 * 11 10 9 13 13 C 1.39736 * 119.99749 * 352.77188 * 11 10 9 14 14 N 1.30979 * 120.00509 * 5.92189 * 13 11 10 15 15 Si 1.86799 * 119.99615 * 185.92100 * 13 11 10 16 16 H 1.48495 * 109.47314 * 94.97595 * 15 13 11 17 17 H 1.48506 * 109.47112 * 214.97089 * 15 13 11 18 18 H 1.48500 * 109.47543 * 334.97264 * 15 13 11 19 19 C 1.35021 * 126.48872 * 120.00020 * 7 4 2 20 20 C 1.50695 * 126.77291 * 359.97438 * 19 7 4 21 21 C 1.54266 * 110.03323 * 237.90536 * 20 19 7 22 22 C 1.54959 * 104.16393 * 217.13944 * 21 20 19 23 23 C 1.54888 * 102.77730 * 37.88998 * 22 21 20 24 24 C 1.53876 * 110.03042 * 120.69453 * 20 19 7 25 25 H 1.09002 * 109.46679 * 299.99892 * 1 2 3 26 26 H 1.08999 * 109.47252 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47187 * 59.99445 * 1 2 3 28 28 H 1.09002 * 109.46679 * 240.00108 * 2 1 3 29 29 H 1.09003 * 109.46727 * 60.00452 * 3 2 1 30 30 H 1.09002 * 109.46861 * 180.02562 * 3 2 1 31 31 H 1.08991 * 109.47258 * 300.00246 * 3 2 1 32 32 H 1.08994 * 109.47021 * 300.00255 * 6 4 2 33 33 H 1.09003 * 109.46738 * 60.00512 * 6 4 2 34 34 H 1.09000 * 109.46783 * 179.97438 * 6 4 2 35 35 H 0.96998 * 120.00797 * 180.02562 * 14 13 11 36 36 H 1.08997 * 110.01948 * 359.29660 * 20 19 7 37 37 H 1.09003 * 110.48627 * 335.79039 * 21 20 19 38 38 H 1.09003 * 110.48795 * 98.42487 * 21 20 19 39 39 H 1.08997 * 110.72004 * 279.57518 * 22 21 20 40 40 H 1.08998 * 110.92441 * 156.29666 * 22 21 20 41 41 H 1.08999 * 110.48699 * 203.41091 * 23 22 21 42 42 H 1.08997 * 110.60354 * 80.81580 * 23 22 21 43 43 H 1.09006 * 110.02810 * 238.56967 * 24 20 19 44 44 H 1.08997 * 110.03628 * 359.94636 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2491 7 7 3.5051 -0.7218 1.2488 8 7 4.3380 -1.2907 0.2762 9 7 5.5649 -1.0929 0.6096 10 6 5.6142 -0.4187 1.7764 11 6 6.7884 -0.0236 2.4601 12 1 6.7186 0.6141 3.3288 13 6 8.0381 -0.4588 2.0112 14 7 8.1336 -1.1350 0.8935 15 14 9.5726 -0.0762 3.0053 16 1 9.8861 -1.2242 3.8934 17 1 10.7126 0.1625 2.0839 18 1 9.3392 1.1373 3.8288 19 6 4.3084 -0.1793 2.1887 20 6 3.8750 0.5430 3.4382 21 6 4.4611 1.9698 3.4541 22 6 4.8083 2.2206 4.9434 23 6 5.3342 0.8403 5.4096 24 6 4.4295 -0.1749 4.6812 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 0.4400 -2.1637 1.2491 33 1 1.8933 -2.6776 0.3591 34 1 1.8937 -2.6778 2.1388 35 1 9.0010 -1.4374 0.5821 36 1 2.7869 0.5858 3.4860 37 1 5.3599 2.0199 2.8394 38 1 3.7203 2.6905 3.1077 39 1 3.9180 2.5043 5.5044 40 1 5.5827 2.9816 5.0398 41 1 5.2303 0.7375 6.4897 42 1 6.3743 0.7059 5.1127 43 1 3.6104 -0.4799 5.3326 44 1 5.0113 -1.0463 4.3807 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545125.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:09 Heat of formation + Delta-G solvation = 57.771194 kcal Electronic energy + Delta-G solvation = -23189.362145 eV Core-core repulsion = 20142.374796 eV Total energy + Delta-G solvation = -3046.987349 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.20118 -37.28689 -36.83087 -33.25540 -31.86507 -30.29415 -29.10829 -28.02947 -27.41460 -26.73637 -24.59378 -23.53351 -21.09421 -20.72115 -20.08203 -19.06342 -18.30839 -16.96168 -15.77615 -15.03062 -14.75829 -14.66756 -14.40733 -14.21332 -13.52402 -13.09509 -12.87106 -12.71269 -12.51820 -12.23081 -12.05547 -11.93739 -11.56757 -11.22685 -11.14443 -11.08333 -10.85764 -10.72272 -10.64745 -10.59885 -10.53347 -10.48512 -10.42251 -10.08775 -9.98613 -9.75169 -9.41416 -9.16477 -8.71704 -8.28259 -7.24259 -6.28649 -4.05177 2.92899 3.20397 3.24509 3.26143 3.67409 4.19084 4.40682 4.80962 5.05536 5.17656 5.23971 5.28610 5.35387 5.41010 5.52478 5.63146 5.66111 5.77380 5.82808 5.87749 5.96275 6.01323 6.03214 6.06947 6.13167 6.19686 6.22959 6.25278 6.31652 6.42526 6.46678 6.50802 6.51948 6.58592 6.63133 6.87988 6.94170 7.03460 7.21559 7.28993 7.55367 7.64914 8.28963 8.57208 8.95096 9.19592 10.34669 10.68820 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.007060 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.610471 B = 3964.961075 C = 4875.651312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.143 4.143 4 C 0.168 3.832 5 H 0.085 0.915 6 C -0.159 4.159 7 N -0.368 5.368 8 N -0.135 5.135 9 N -0.234 5.234 10 C 0.156 3.844 11 C -0.451 4.451 12 H 0.090 0.910 13 C 0.073 3.927 14 N -0.778 5.778 15 Si 0.896 3.104 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.264 1.264 19 C -0.102 4.102 20 C 0.016 3.984 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.110 4.110 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.269 0.731 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.328 4.126 5.035 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.200 4.200 4 C 0.064 3.936 5 H 0.103 0.897 6 C -0.217 4.217 7 N -0.163 5.163 8 N -0.110 5.110 9 N -0.105 5.105 10 C 0.025 3.975 11 C -0.487 4.487 12 H 0.108 0.892 13 C -0.145 4.145 14 N -0.405 5.405 15 Si 0.722 3.278 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.188 1.188 19 C -0.234 4.234 20 C -0.005 4.005 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.148 4.148 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.127 3.210 3.491 12.095 hybrid contribution 0.588 0.637 1.370 1.622 sum -10.539 3.847 4.861 12.227 Atomic orbital electron populations 1.21884 0.94883 1.01808 1.01701 1.21421 0.95218 0.96903 0.98587 1.21760 1.02307 0.95139 1.00782 1.20993 0.77427 0.96713 0.98516 0.89678 1.22153 1.00486 0.95801 1.03256 1.49552 1.05015 1.42927 1.18787 1.81447 0.95944 1.21048 1.12578 1.75106 1.07555 1.14960 1.12883 1.18895 0.90938 0.96848 0.90804 1.18742 0.88173 1.29564 1.12226 0.89167 1.25767 1.00023 0.94201 0.94511 1.70031 1.25102 1.27889 1.17492 0.86504 0.81711 0.79398 0.80232 1.20004 1.20681 1.18834 1.21424 0.91422 1.13684 0.96841 1.19679 0.97091 0.93457 0.90257 1.22506 1.01806 0.94939 0.96302 1.22454 0.99705 0.97272 0.96529 1.22397 1.00845 0.94563 0.98216 1.22132 0.98254 0.99400 0.95043 0.92782 0.92277 0.92544 0.90069 0.93168 0.91905 0.93109 0.91506 0.91355 0.92454 0.92054 0.92942 0.89196 0.93189 0.92678 0.92196 0.92996 0.90446 0.93467 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.84 37.16 0.33 -1.25 16 2 C -0.10 -1.49 2.64 -90.62 -0.24 -1.73 16 3 C -0.14 -2.17 9.04 37.16 0.34 -1.83 16 4 C 0.17 2.74 2.66 -67.93 -0.18 2.56 16 5 H 0.09 1.28 6.43 -51.93 -0.33 0.95 16 6 C -0.16 -2.32 9.11 37.16 0.34 -1.99 16 7 N -0.37 -7.88 2.52 -49.73 -0.13 -8.00 16 8 N -0.13 -3.46 13.62 60.35 0.82 -2.64 16 9 N -0.23 -6.72 10.59 32.05 0.34 -6.38 16 10 C 0.16 4.15 6.24 -85.01 -0.53 3.62 16 11 C -0.45 -11.82 7.62 -37.78 -0.29 -12.11 16 12 H 0.09 2.17 3.73 -52.49 -0.20 1.98 16 13 C 0.07 1.94 5.49 -17.36 -0.10 1.84 16 14 N -0.78 -22.10 11.95 55.54 0.66 -21.44 16 15 Si 0.90 19.59 29.56 -169.99 -5.03 14.56 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 19 C -0.10 -2.29 5.65 -80.90 -0.46 -2.75 16 20 C 0.02 0.29 3.11 -90.66 -0.28 0.01 16 21 C -0.12 -2.03 5.82 -25.03 -0.15 -2.18 16 22 C -0.12 -1.81 6.91 -24.70 -0.17 -1.98 16 23 C -0.12 -1.96 6.26 -25.07 -0.16 -2.12 16 24 C -0.11 -1.92 5.81 -25.61 -0.15 -2.07 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.20 7.61 -51.93 -0.39 0.80 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.27 7.08 8.30 -40.82 -0.34 6.74 16 36 H 0.05 0.87 6.50 -51.93 -0.34 0.53 16 37 H 0.09 1.84 5.97 -51.93 -0.31 1.53 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.38 6.39 -51.93 -0.33 1.05 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.57 7.22 -51.93 -0.37 1.20 16 LS Contribution 337.43 15.07 5.09 5.09 Total: -1.00 -30.19 337.43 -7.09 -37.28 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.15 Total: 3.49 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -1.69 Total: -21.97 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 1.70 Total: -38.45 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.19 -7.09 -37.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545125.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.051 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds