Wall clock time and date at job start Mon Mar 30 2020 07:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47128 * 2 1 4 4 C 1.52995 * 109.47111 * 120.00434 * 2 1 3 5 5 H 1.09002 * 109.47082 * 299.99427 * 4 2 1 6 6 C 1.53003 * 109.47152 * 59.99586 * 4 2 1 7 7 N 1.46509 * 109.46956 * 179.97438 * 4 2 1 8 8 N 1.40117 * 126.49412 * 299.68614 * 7 4 2 9 9 N 1.28664 * 108.93892 * 179.87148 * 8 7 4 10 10 C 1.34849 * 109.63128 * 0.40063 * 9 8 7 11 11 C 1.41494 * 126.02010 * 179.78791 * 10 9 8 12 12 H 1.07994 * 119.99629 * 172.77585 * 11 10 9 13 13 C 1.39736 * 119.99749 * 352.77188 * 11 10 9 14 14 N 1.30979 * 120.00509 * 5.92189 * 13 11 10 15 15 Si 1.86799 * 119.99615 * 185.92100 * 13 11 10 16 16 H 1.48495 * 109.47314 * 94.97595 * 15 13 11 17 17 H 1.48506 * 109.47112 * 214.97089 * 15 13 11 18 18 H 1.48500 * 109.47543 * 334.97264 * 15 13 11 19 19 C 1.35021 * 126.48872 * 120.00020 * 7 4 2 20 20 C 1.50695 * 126.77291 * 359.97438 * 19 7 4 21 21 C 1.54266 * 110.03323 * 237.90536 * 20 19 7 22 22 C 1.54959 * 104.16393 * 217.13944 * 21 20 19 23 23 C 1.54888 * 102.77730 * 37.88998 * 22 21 20 24 24 C 1.53876 * 110.03042 * 120.69453 * 20 19 7 25 25 H 1.09002 * 109.46679 * 299.99892 * 1 2 3 26 26 H 1.08999 * 109.47252 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47187 * 59.99445 * 1 2 3 28 28 H 1.09002 * 109.46679 * 240.00108 * 2 1 3 29 29 H 1.09003 * 109.46727 * 60.00452 * 3 2 1 30 30 H 1.09002 * 109.46861 * 180.02562 * 3 2 1 31 31 H 1.08991 * 109.47258 * 300.00246 * 3 2 1 32 32 H 1.08994 * 109.47021 * 300.00255 * 6 4 2 33 33 H 1.09003 * 109.46738 * 60.00512 * 6 4 2 34 34 H 1.09000 * 109.46783 * 179.97438 * 6 4 2 35 35 H 0.96998 * 120.00797 * 180.02562 * 14 13 11 36 36 H 1.08997 * 110.01948 * 359.29660 * 20 19 7 37 37 H 1.09003 * 110.48627 * 335.79039 * 21 20 19 38 38 H 1.09003 * 110.48795 * 98.42487 * 21 20 19 39 39 H 1.08997 * 110.72004 * 279.57518 * 22 21 20 40 40 H 1.08998 * 110.92441 * 156.29666 * 22 21 20 41 41 H 1.08999 * 110.48699 * 203.41091 * 23 22 21 42 42 H 1.08997 * 110.60354 * 80.81580 * 23 22 21 43 43 H 1.09006 * 110.02810 * 238.56967 * 24 20 19 44 44 H 1.08997 * 110.03628 * 359.94636 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2491 7 7 3.5051 -0.7218 1.2488 8 7 4.3380 -1.2907 0.2762 9 7 5.5649 -1.0929 0.6096 10 6 5.6142 -0.4187 1.7764 11 6 6.7884 -0.0236 2.4601 12 1 6.7186 0.6141 3.3288 13 6 8.0381 -0.4588 2.0112 14 7 8.1336 -1.1350 0.8935 15 14 9.5726 -0.0762 3.0053 16 1 9.8861 -1.2242 3.8934 17 1 10.7126 0.1625 2.0839 18 1 9.3392 1.1373 3.8288 19 6 4.3084 -0.1793 2.1887 20 6 3.8750 0.5430 3.4382 21 6 4.4611 1.9698 3.4541 22 6 4.8083 2.2206 4.9434 23 6 5.3342 0.8403 5.4096 24 6 4.4295 -0.1749 4.6812 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 0.4400 -2.1637 1.2491 33 1 1.8933 -2.6776 0.3591 34 1 1.8937 -2.6778 2.1388 35 1 9.0010 -1.4374 0.5821 36 1 2.7869 0.5858 3.4860 37 1 5.3599 2.0199 2.8394 38 1 3.7203 2.6905 3.1077 39 1 3.9180 2.5043 5.5044 40 1 5.5827 2.9816 5.0398 41 1 5.2303 0.7375 6.4897 42 1 6.3743 0.7059 5.1127 43 1 3.6104 -0.4799 5.3326 44 1 5.0113 -1.0463 4.3807 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545125.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:08 Heat of formation + Delta-G solvation = 40.191355 kcal Electronic energy + Delta-G solvation = -23190.124464 eV Core-core repulsion = 20142.374796 eV Total energy + Delta-G solvation = -3047.749668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.00440 -38.67883 -38.21771 -35.14108 -33.45001 -31.86194 -30.67300 -29.37294 -29.02098 -27.84528 -26.44874 -24.97225 -22.71444 -22.29990 -21.35587 -20.65777 -19.87013 -18.69385 -17.38610 -16.73477 -16.21543 -16.15808 -15.85208 -15.50110 -14.91227 -14.77603 -14.30024 -14.08585 -13.95256 -13.57179 -13.25191 -13.15506 -12.96429 -12.88729 -12.76424 -12.55018 -12.26718 -12.25485 -12.04260 -11.89751 -11.83446 -11.78322 -11.72593 -11.63628 -11.54189 -11.20807 -11.05421 -11.03145 -10.59512 -10.07676 -9.17389 -8.22673 -6.05293 1.13179 1.42474 1.43963 1.55457 2.07172 2.35775 2.43181 3.54513 3.62351 3.83763 3.85771 3.90234 4.00389 4.07531 4.21782 4.33175 4.50295 4.53522 4.60468 4.72240 4.74964 4.75923 4.80431 4.85853 4.89354 4.96195 4.98852 4.99510 5.09491 5.10834 5.14440 5.21859 5.23947 5.28167 5.39145 5.43393 5.46865 5.52921 5.62513 5.66451 5.73922 5.85715 6.56541 6.60714 7.03934 7.21199 8.43903 8.77877 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.007060 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.610471 B = 3964.961075 C = 4875.651312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 C -0.138 4.138 4 C 0.150 3.850 5 H 0.113 0.887 6 C -0.152 4.152 7 N -0.349 5.349 8 N -0.176 5.176 9 N -0.293 5.293 10 C 0.112 3.888 11 C -0.467 4.467 12 H 0.105 0.895 13 C 0.017 3.983 14 N -0.833 5.833 15 Si 0.968 3.032 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.247 1.247 19 C -0.068 4.068 20 C 0.011 3.989 21 C -0.117 4.117 22 C -0.110 4.110 23 C -0.123 4.123 24 C -0.107 4.107 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.012 0.988 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.266 0.734 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.585 5.973 8.035 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 C -0.196 4.196 4 C 0.048 3.952 5 H 0.130 0.870 6 C -0.210 4.210 7 N -0.142 5.142 8 N -0.150 5.150 9 N -0.161 5.161 10 C -0.021 4.021 11 C -0.504 4.504 12 H 0.123 0.877 13 C -0.195 4.195 14 N -0.463 5.463 15 Si 0.791 3.209 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.170 1.170 19 C -0.204 4.204 20 C -0.009 4.009 21 C -0.155 4.155 22 C -0.148 4.148 23 C -0.160 4.160 24 C -0.146 4.146 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.031 0.969 31 H 0.085 0.915 32 H 0.130 0.870 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.441 5.040 6.455 16.601 hybrid contribution 1.329 0.109 0.468 1.413 sum -13.112 5.149 6.923 15.696 Atomic orbital electron populations 1.21835 0.90934 1.03227 1.03359 1.21385 0.98259 0.95708 0.96310 1.21727 0.98995 0.96137 1.02700 1.21649 0.74155 0.98679 1.00689 0.86968 1.22129 1.03201 0.93957 1.01719 1.50037 1.07126 1.40000 1.17043 1.81318 0.95810 1.23585 1.14284 1.75052 1.09152 1.17260 1.14660 1.19456 0.93092 0.98334 0.91235 1.19129 0.88596 1.29925 1.12711 0.87689 1.26703 1.03435 0.93960 0.95395 1.70219 1.25519 1.30632 1.19921 0.85394 0.77279 0.79698 0.78565 1.19641 1.20825 1.17014 1.22215 0.90517 1.10378 0.97241 1.19992 0.98997 0.93699 0.88255 1.22448 1.00570 0.94549 0.97971 1.22433 1.01301 0.96629 0.94414 1.22384 0.98920 0.94837 0.99875 1.22092 0.99098 0.98228 0.95146 0.90690 0.91001 0.91376 0.92911 0.91046 0.96865 0.91453 0.86978 0.93566 0.93385 0.92407 0.89813 0.93193 0.91141 0.89332 0.91445 0.89939 0.93179 0.90170 0.94507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.84 71.98 0.64 -1.74 16 2 C -0.10 -2.66 2.64 -10.79 -0.03 -2.69 16 3 C -0.14 -4.00 9.04 71.98 0.65 -3.35 16 4 C 0.15 4.60 2.66 44.99 0.12 4.72 16 5 H 0.11 2.87 6.43 -2.39 -0.02 2.85 16 6 C -0.15 -4.16 9.11 71.98 0.66 -3.50 16 7 N -0.35 -15.16 2.52 -311.26 -0.79 -15.95 16 8 N -0.18 -9.58 13.62 37.02 0.50 -9.07 16 9 N -0.29 -18.07 10.59 -52.51 -0.56 -18.62 16 10 C 0.11 6.31 6.24 39.67 0.25 6.56 16 11 C -0.47 -25.68 7.62 23.43 0.18 -25.50 16 12 H 0.11 5.22 3.73 -2.91 -0.01 5.21 16 13 C 0.02 0.97 5.49 85.18 0.47 1.44 16 14 N -0.83 -50.79 11.95 21.79 0.26 -50.52 16 15 Si 0.97 41.96 29.56 68.60 2.03 43.99 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 19 C -0.07 -3.08 5.65 42.25 0.24 -2.84 16 20 C 0.01 0.39 3.11 -10.82 -0.03 0.36 16 21 C -0.12 -3.78 5.82 31.69 0.18 -3.59 16 22 C -0.11 -2.83 6.91 31.91 0.22 -2.61 16 23 C -0.12 -3.56 6.26 31.67 0.20 -3.36 16 24 C -0.11 -3.49 5.81 31.32 0.18 -3.31 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.10 6.43 -2.39 -0.02 1.08 16 27 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.01 0.48 7.61 -2.39 -0.02 0.46 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.11 2.05 6.43 -2.39 -0.02 2.04 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.27 15.13 8.30 -92.71 -0.77 14.36 16 36 H 0.08 2.36 6.50 -2.39 -0.02 2.34 16 37 H 0.05 2.04 5.97 -2.39 -0.01 2.02 16 38 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.05 1.73 6.39 -2.39 -0.02 1.71 16 43 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.04 1.49 7.22 -2.39 -0.02 1.48 16 Total: -1.00 -74.39 337.43 6.35 -68.04 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.98 Total: 21.56 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 3.92 Total: -39.42 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -0.58 Total: -94.17 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -74.39 6.35 -68.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545125.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.229 kcal (2) G-P(sol) polarization free energy of solvation -74.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds