Wall clock time and date at job start Mon Mar 30 2020 08:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00139 * 2 1 4 4 H 1.48500 * 109.47172 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47365 * 300.00052 * 3 2 1 6 6 H 1.48503 * 109.47128 * 59.99977 * 3 2 1 7 7 C 1.37875 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99644 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00450 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.53779 * 60.09442 * 9 7 2 11 11 C 1.53123 * 109.50208 * 300.00168 * 9 7 2 12 12 C 1.53120 * 109.16050 * 182.40450 * 11 9 7 13 13 C 1.53035 * 109.27849 * 57.65066 * 12 11 9 14 14 N 1.46849 * 109.52513 * 300.82432 * 13 12 11 15 15 C 1.46899 * 111.00006 * 185.84109 * 14 13 12 16 16 C 1.53004 * 109.47357 * 75.73046 * 15 14 13 17 17 H 1.08994 * 109.46907 * 303.40746 * 16 15 14 18 18 C 1.53002 * 109.47156 * 183.40608 * 16 15 14 19 19 C 1.52995 * 109.46961 * 240.00131 * 18 16 15 20 20 C 1.52998 * 109.47501 * 60.00236 * 19 18 16 21 21 C 1.53002 * 109.46821 * 299.99850 * 20 19 18 22 22 C 1.52999 * 109.47110 * 63.40639 * 16 15 14 23 23 C 1.52994 * 109.47139 * 179.97438 * 22 16 15 24 24 C 1.52996 * 109.47242 * 299.99778 * 19 18 16 25 25 C 1.46837 * 111.20094 * 61.74181 * 14 13 12 26 26 H 0.97003 * 120.00106 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.52566 * 62.49572 * 11 9 7 28 28 H 1.09007 * 109.51940 * 302.30610 * 11 9 7 29 29 H 1.08994 * 109.50322 * 297.71163 * 12 11 9 30 30 H 1.08997 * 109.53553 * 177.61137 * 12 11 9 31 31 H 1.08997 * 109.46186 * 180.80471 * 13 12 11 32 32 H 1.09007 * 109.45620 * 60.83386 * 13 12 11 33 33 H 1.09001 * 109.47433 * 315.73268 * 15 14 13 34 34 H 1.09000 * 109.47271 * 195.73139 * 15 14 13 35 35 H 1.09003 * 109.46965 * 119.99957 * 18 16 15 36 36 H 1.08998 * 109.46793 * 0.02562 * 18 16 15 37 37 H 1.09006 * 109.46789 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.47464 * 179.97438 * 20 19 18 39 39 H 1.09004 * 109.47089 * 59.99725 * 20 19 18 40 40 H 1.08999 * 109.47164 * 119.99584 * 21 20 19 41 41 H 1.08996 * 109.46773 * 239.99795 * 21 20 19 42 42 H 1.09006 * 109.47257 * 300.00313 * 22 16 15 43 43 H 1.08997 * 109.47369 * 60.00070 * 23 22 16 44 44 H 1.09007 * 109.47008 * 179.97438 * 23 22 16 45 45 H 1.09001 * 109.47763 * 180.02562 * 24 19 18 46 46 H 1.09003 * 109.47180 * 300.00478 * 24 19 18 47 47 H 1.09003 * 109.46373 * 58.27374 * 25 14 13 48 48 H 1.09000 * 109.46571 * 178.24142 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6255 -2.5590 -0.8901 11 6 0.3698 -2.5807 1.2502 12 6 -0.3459 -3.9342 1.2730 13 6 0.6942 -5.0563 1.2417 14 7 1.5110 -4.9347 0.0274 15 6 2.4285 -6.0741 -0.1062 16 6 1.6487 -7.3048 -0.5736 17 1 0.8378 -7.5082 0.1256 18 6 2.5873 -8.5117 -0.6312 19 6 2.6330 -9.0544 -2.0610 20 6 3.1457 -7.9643 -3.0042 21 6 2.2071 -6.7574 -2.9466 22 6 1.0687 -7.0429 -1.9650 23 6 0.2895 -8.2738 -2.4326 24 6 1.2276 -9.4804 -2.4900 25 6 2.2447 -3.6630 0.0061 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3680 -1.7788 1.2287 28 1 0.9907 -2.4819 2.1407 29 1 -0.9964 -4.0166 0.4024 30 1 -0.9421 -4.0159 2.1818 31 1 0.1874 -6.0213 1.2434 32 1 1.3357 -4.9814 2.1198 33 1 2.8920 -6.2825 0.8580 34 1 3.2012 -5.8347 -0.8367 35 1 2.2221 -9.2884 0.0408 36 1 3.5884 -8.2083 -0.3252 37 1 3.3014 -9.9145 -2.1019 38 1 3.1787 -8.3511 -4.0227 39 1 4.1470 -7.6608 -2.6985 40 1 2.7626 -5.8807 -2.6136 41 1 1.7939 -6.5708 -3.9378 42 1 0.4000 -6.1830 -1.9240 43 1 -0.5214 -8.4777 -1.7335 44 1 -0.1241 -8.0870 -3.4238 45 1 1.2601 -9.8675 -3.5084 46 1 0.8624 -10.2571 -1.8180 47 1 2.8789 -3.5947 0.8900 48 1 2.8641 -3.6159 -0.8895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691756938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:32:04 Heat of formation + Delta-G solvation = -35.299998 kcal Electronic energy + Delta-G solvation = -23186.650265 eV Core-core repulsion = 20239.167390 eV Total energy + Delta-G solvation = -2947.482875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.52858 -37.92711 -34.05198 -32.23953 -31.16236 -30.75535 -30.45766 -29.67830 -25.34296 -24.90949 -22.46254 -22.17301 -22.05421 -21.50168 -20.22196 -18.52051 -16.44307 -16.34441 -16.25851 -15.80732 -15.30872 -14.72110 -14.42077 -14.00770 -13.34133 -13.13459 -12.82371 -12.59035 -12.32830 -12.18314 -12.02280 -11.96838 -11.85616 -11.82419 -11.70090 -11.49685 -11.36105 -10.94551 -10.78968 -10.62503 -10.60542 -10.41616 -10.05381 -9.81242 -9.67003 -9.63822 -9.55739 -9.39910 -8.92514 -8.65061 -8.26870 -7.54640 -5.94315 -4.00231 3.31510 3.39611 3.43278 4.41140 4.55927 4.62217 4.69656 4.83550 5.24344 5.35667 5.36446 5.38390 5.42464 5.45389 5.46945 5.52192 5.56492 5.66315 5.74522 5.77934 5.83937 5.94943 6.00241 6.03733 6.05833 6.13875 6.18116 6.27287 6.30378 6.38322 6.39245 6.46114 6.50880 6.57122 6.60078 6.69419 6.77158 6.80851 6.82134 7.03199 7.27640 7.46448 7.75481 7.80153 7.91996 8.13524 8.22209 8.52781 9.04225 9.63983 11.11570 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.028272 B = 0.004273 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.149297 B = 6551.402204 C = 6889.275756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.064 3.936 14 N -0.534 5.534 15 C 0.058 3.942 16 C -0.072 4.072 17 H 0.065 0.935 18 C -0.110 4.110 19 C -0.084 4.084 20 C -0.113 4.113 21 C -0.113 4.113 22 C -0.071 4.071 23 C -0.115 4.115 24 C -0.112 4.112 25 C 0.069 3.931 26 H 0.258 0.742 27 H 0.090 0.910 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.023 0.977 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.015 0.985 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.555 -17.637 -2.672 18.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.064 4.064 14 N -0.258 5.258 15 C -0.070 4.070 16 C -0.091 4.091 17 H 0.084 0.916 18 C -0.148 4.148 19 C -0.102 4.102 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.090 4.090 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.058 4.058 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.034 0.966 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.097 -17.507 -3.073 17.898 hybrid contribution 1.052 0.920 0.796 1.608 sum 3.148 -16.588 -2.277 17.037 Atomic orbital electron populations 1.69905 1.05819 1.26119 1.50888 1.24926 0.94804 0.98892 0.95200 0.86596 0.80146 0.84077 0.77516 1.19893 1.21056 1.21137 1.21203 0.92828 0.90758 1.50403 0.92894 1.18653 0.92603 0.90298 0.94778 0.94829 1.21645 1.00000 0.94735 0.98443 1.21664 0.97200 0.96554 1.00023 1.22038 0.95661 0.98529 0.90216 1.61945 1.24042 1.02157 1.37655 1.22267 0.94663 0.91240 0.98834 1.21078 0.97440 0.93548 0.97055 0.91648 1.21612 0.99759 0.97438 0.95956 1.20994 0.96470 0.97465 0.95302 1.21544 0.98865 0.95961 0.98656 1.21536 0.96847 0.97661 0.99016 1.20901 0.96791 0.97681 0.93584 1.21557 0.97664 0.95135 1.00878 1.21522 0.95172 0.97660 1.00562 1.22293 0.96330 0.88729 0.98446 0.93176 0.89203 0.95318 0.92177 0.93778 0.92503 0.96225 0.95866 0.91097 0.92491 0.92150 0.91955 0.92625 0.92453 0.91354 0.92577 0.89469 0.92429 0.92400 0.92564 0.92569 0.96634 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 11.35 55.43 0.63 -24.84 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.15 8.56 -34.44 -0.29 -14.44 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.63 5.02 -26.61 -0.13 -2.77 16 12 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 13 C 0.06 1.13 5.29 -3.83 -0.02 1.11 16 14 N -0.53 -9.69 3.97 -234.67 -0.93 -10.62 16 15 C 0.06 0.88 3.84 -3.82 -0.01 0.86 16 16 C -0.07 -0.93 2.27 -90.62 -0.21 -1.14 16 17 H 0.07 0.88 6.74 -51.93 -0.35 0.53 16 18 C -0.11 -1.21 5.38 -26.73 -0.14 -1.35 16 19 C -0.08 -0.86 3.19 -90.63 -0.29 -1.15 16 20 C -0.11 -1.22 5.71 -26.73 -0.15 -1.37 16 21 C -0.11 -1.43 5.36 -26.73 -0.14 -1.57 16 22 C -0.07 -0.93 2.60 -90.62 -0.24 -1.17 16 23 C -0.11 -1.29 5.70 -26.76 -0.15 -1.45 16 24 C -0.11 -1.11 5.71 -26.76 -0.15 -1.27 16 25 C 0.07 1.47 4.65 -3.84 -0.02 1.45 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 28 H 0.03 0.69 8.14 -51.92 -0.42 0.26 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.90 6.67 -51.93 -0.35 0.55 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.35 8.00 -51.93 -0.42 -0.06 16 34 H 0.07 1.07 5.90 -51.93 -0.31 0.77 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.66 7.59 -51.93 -0.39 0.27 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.97 6.35 -51.93 -0.33 0.64 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.37 7.70 -51.93 -0.40 0.97 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -27.38 344.34 -11.71 -39.09 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -9.16 Total: -1.30 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -2.42 Total: -23.87 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.30 Total: -35.46 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.38 -11.71 -39.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691756938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.790 kcal (2) G-P(sol) polarization free energy of solvation -27.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds