Wall clock time and date at job start Mon Mar 30 2020 08:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00139 * 2 1 4 4 H 1.48500 * 109.47172 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47365 * 300.00052 * 3 2 1 6 6 H 1.48503 * 109.47128 * 59.99977 * 3 2 1 7 7 C 1.37875 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99644 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00450 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.53779 * 60.09442 * 9 7 2 11 11 C 1.53123 * 109.50208 * 300.00168 * 9 7 2 12 12 C 1.53120 * 109.16050 * 182.40450 * 11 9 7 13 13 C 1.53035 * 109.27849 * 57.65066 * 12 11 9 14 14 N 1.46849 * 109.52513 * 300.82432 * 13 12 11 15 15 C 1.46899 * 111.00006 * 185.84109 * 14 13 12 16 16 C 1.53004 * 109.47357 * 75.73046 * 15 14 13 17 17 H 1.08994 * 109.46907 * 303.40746 * 16 15 14 18 18 C 1.53002 * 109.47156 * 183.40608 * 16 15 14 19 19 C 1.52995 * 109.46961 * 240.00131 * 18 16 15 20 20 C 1.52998 * 109.47501 * 60.00236 * 19 18 16 21 21 C 1.53002 * 109.46821 * 299.99850 * 20 19 18 22 22 C 1.52999 * 109.47110 * 63.40639 * 16 15 14 23 23 C 1.52994 * 109.47139 * 179.97438 * 22 16 15 24 24 C 1.52996 * 109.47242 * 299.99778 * 19 18 16 25 25 C 1.46837 * 111.20094 * 61.74181 * 14 13 12 26 26 H 0.97003 * 120.00106 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.52566 * 62.49572 * 11 9 7 28 28 H 1.09007 * 109.51940 * 302.30610 * 11 9 7 29 29 H 1.08994 * 109.50322 * 297.71163 * 12 11 9 30 30 H 1.08997 * 109.53553 * 177.61137 * 12 11 9 31 31 H 1.08997 * 109.46186 * 180.80471 * 13 12 11 32 32 H 1.09007 * 109.45620 * 60.83386 * 13 12 11 33 33 H 1.09001 * 109.47433 * 315.73268 * 15 14 13 34 34 H 1.09000 * 109.47271 * 195.73139 * 15 14 13 35 35 H 1.09003 * 109.46965 * 119.99957 * 18 16 15 36 36 H 1.08998 * 109.46793 * 0.02562 * 18 16 15 37 37 H 1.09006 * 109.46789 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.47464 * 179.97438 * 20 19 18 39 39 H 1.09004 * 109.47089 * 59.99725 * 20 19 18 40 40 H 1.08999 * 109.47164 * 119.99584 * 21 20 19 41 41 H 1.08996 * 109.46773 * 239.99795 * 21 20 19 42 42 H 1.09006 * 109.47257 * 300.00313 * 22 16 15 43 43 H 1.08997 * 109.47369 * 60.00070 * 23 22 16 44 44 H 1.09007 * 109.47008 * 179.97438 * 23 22 16 45 45 H 1.09001 * 109.47763 * 180.02562 * 24 19 18 46 46 H 1.09003 * 109.47180 * 300.00478 * 24 19 18 47 47 H 1.09003 * 109.46373 * 58.27374 * 25 14 13 48 48 H 1.09000 * 109.46571 * 178.24142 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6255 -2.5590 -0.8901 11 6 0.3698 -2.5807 1.2502 12 6 -0.3459 -3.9342 1.2730 13 6 0.6942 -5.0563 1.2417 14 7 1.5110 -4.9347 0.0274 15 6 2.4285 -6.0741 -0.1062 16 6 1.6487 -7.3048 -0.5736 17 1 0.8378 -7.5082 0.1256 18 6 2.5873 -8.5117 -0.6312 19 6 2.6330 -9.0544 -2.0610 20 6 3.1457 -7.9643 -3.0042 21 6 2.2071 -6.7574 -2.9466 22 6 1.0687 -7.0429 -1.9650 23 6 0.2895 -8.2738 -2.4326 24 6 1.2276 -9.4804 -2.4900 25 6 2.2447 -3.6630 0.0061 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3680 -1.7788 1.2287 28 1 0.9907 -2.4819 2.1407 29 1 -0.9964 -4.0166 0.4024 30 1 -0.9421 -4.0159 2.1818 31 1 0.1874 -6.0213 1.2434 32 1 1.3357 -4.9814 2.1198 33 1 2.8920 -6.2825 0.8580 34 1 3.2012 -5.8347 -0.8367 35 1 2.2221 -9.2884 0.0408 36 1 3.5884 -8.2083 -0.3252 37 1 3.3014 -9.9145 -2.1019 38 1 3.1787 -8.3511 -4.0227 39 1 4.1470 -7.6608 -2.6985 40 1 2.7626 -5.8807 -2.6136 41 1 1.7939 -6.5708 -3.9378 42 1 0.4000 -6.1830 -1.9240 43 1 -0.5214 -8.4777 -1.7335 44 1 -0.1241 -8.0870 -3.4238 45 1 1.2601 -9.8675 -3.5084 46 1 0.8624 -10.2571 -1.8180 47 1 2.8789 -3.5947 0.8900 48 1 2.8641 -3.6159 -0.8895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691756938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:32:03 Heat of formation + Delta-G solvation = -47.853463 kcal Electronic energy + Delta-G solvation = -23187.194624 eV Core-core repulsion = 20239.167390 eV Total energy + Delta-G solvation = -2948.027234 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52044 -39.50846 -35.77579 -33.94321 -32.07397 -31.93139 -31.63835 -31.41463 -26.93684 -26.63442 -23.67171 -23.46312 -23.18509 -22.89635 -21.43817 -20.31591 -18.42290 -17.35789 -17.23848 -16.88491 -16.74005 -16.25421 -15.89237 -15.52155 -14.93903 -14.69509 -14.41993 -14.07846 -13.68618 -13.60019 -13.20579 -12.94799 -12.87115 -12.85631 -12.79550 -12.74938 -12.72190 -12.60863 -12.41144 -12.39332 -11.94558 -11.78931 -11.67866 -11.45071 -11.31671 -10.85475 -10.65925 -10.59368 -10.52727 -10.47930 -10.34720 -9.04236 -8.08002 -6.22241 1.39367 1.40971 1.52352 2.42465 3.13488 3.18842 3.69201 3.76487 3.90707 4.16909 4.21308 4.27012 4.34781 4.45648 4.50109 4.53341 4.55428 4.58656 4.61491 4.62831 4.65030 4.71129 4.80418 4.80947 4.85605 4.91794 4.93587 4.98196 5.09048 5.16091 5.19856 5.21930 5.27471 5.37421 5.40258 5.47374 5.51940 5.53062 5.56493 5.62569 5.64327 5.67519 5.79238 5.98722 6.14265 6.23669 6.44078 6.48480 6.90796 7.45691 8.96704 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.028272 B = 0.004273 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.149297 B = 6551.402204 C = 6889.275756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.055 3.945 10 H -0.005 1.005 11 C -0.103 4.103 12 C -0.109 4.109 13 C 0.068 3.932 14 N -0.540 5.540 15 C 0.061 3.939 16 C -0.066 4.066 17 H 0.064 0.936 18 C -0.106 4.106 19 C -0.082 4.082 20 C -0.110 4.110 21 C -0.113 4.113 22 C -0.071 4.071 23 C -0.113 4.113 24 C -0.108 4.108 25 C 0.084 3.916 26 H 0.260 0.740 27 H 0.057 0.943 28 H 0.020 0.980 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.022 0.978 33 H 0.030 0.970 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.010 0.990 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 -19.824 -2.398 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.068 0.932 9 C 0.036 3.964 10 H 0.013 0.987 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.059 4.059 14 N -0.264 5.264 15 C -0.067 4.067 16 C -0.084 4.084 17 H 0.082 0.918 18 C -0.144 4.144 19 C -0.100 4.100 20 C -0.147 4.147 21 C -0.151 4.151 22 C -0.090 4.090 23 C -0.150 4.150 24 C -0.146 4.146 25 C -0.043 4.043 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.040 0.960 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.028 0.972 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.959 -19.713 -2.799 20.129 hybrid contribution 0.754 1.631 0.679 1.921 sum 3.712 -18.082 -2.120 18.580 Atomic orbital electron populations 1.70046 1.07164 1.26959 1.51308 1.25708 0.95646 1.02275 0.94771 0.85577 0.79058 0.79806 0.77634 1.19234 1.20573 1.20561 1.21558 0.92908 0.92294 1.50697 0.93247 1.18561 0.92929 0.91283 0.93634 0.98663 1.21454 0.99062 0.96312 0.97310 1.21566 0.97529 0.94881 1.00711 1.22024 0.95111 0.98878 0.89937 1.61894 1.24551 1.01775 1.38164 1.22341 0.94427 0.90791 0.99146 1.21028 0.97564 0.93317 0.96540 0.91769 1.21597 0.99206 0.96638 0.96988 1.21017 0.97010 0.97662 0.94346 1.21530 0.98244 0.95246 0.99714 1.21504 0.96994 0.97950 0.98613 1.20830 0.96527 0.97438 0.94165 1.21528 0.97838 0.94888 1.00771 1.21514 0.94471 0.97014 1.01566 1.21943 0.95206 0.89284 0.97896 0.93092 0.92450 0.96097 0.93223 0.91444 0.89610 0.96013 0.95214 0.91427 0.91010 0.91973 0.90014 0.91513 0.92350 0.93583 0.92911 0.92860 0.92311 0.92475 0.91573 0.91359 0.97192 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.09 11.35 21.45 0.24 -53.85 16 2 C 0.01 0.83 5.30 84.65 0.45 1.28 16 3 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.54 -30.48 8.56 25.60 0.22 -30.26 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.05 2.86 2.26 -11.49 -0.03 2.84 16 10 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 11 C -0.10 -5.08 5.02 30.68 0.15 -4.93 16 12 C -0.11 -4.30 6.09 30.65 0.19 -4.11 16 13 C 0.07 2.34 5.29 86.32 0.46 2.80 16 14 N -0.54 -19.60 3.97 -896.37 -3.56 -23.15 16 15 C 0.06 1.76 3.84 86.30 0.33 2.10 16 16 C -0.07 -1.58 2.27 -10.79 -0.02 -1.60 16 17 H 0.06 1.57 6.74 -2.39 -0.02 1.56 16 18 C -0.11 -2.01 5.38 30.59 0.16 -1.85 16 19 C -0.08 -1.41 3.19 -10.80 -0.03 -1.44 16 20 C -0.11 -2.14 5.71 30.59 0.17 -1.97 16 21 C -0.11 -2.82 5.36 30.60 0.16 -2.65 16 22 C -0.07 -1.81 2.60 -10.80 -0.03 -1.84 16 23 C -0.11 -2.34 5.70 30.58 0.17 -2.17 16 24 C -0.11 -1.80 5.71 30.58 0.17 -1.63 16 25 C 0.08 3.69 4.65 86.33 0.40 4.09 16 26 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.06 3.19 6.15 -2.39 -0.01 3.18 16 28 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.09 2.49 6.67 -2.39 -0.02 2.48 16 32 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.03 0.84 8.00 -2.39 -0.02 0.82 16 34 H 0.07 2.02 5.90 -2.39 -0.01 2.01 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.18 7.59 -2.39 -0.02 1.16 16 37 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.05 1.33 6.35 -2.39 -0.02 1.31 16 41 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.05 1.71 7.70 -2.38 -0.02 1.69 16 43 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.05 2.28 7.93 -2.39 -0.02 2.26 16 Total: -1.00 -60.57 344.34 2.54 -58.03 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.89 Total: 13.81 kcal Atomic # 6 Polarization: -44.28 SS G_CDS: 2.94 Total: -41.34 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -3.31 Total: -77.00 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -60.57 2.54 -58.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691756938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.177 kcal (2) G-P(sol) polarization free energy of solvation -60.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds