Wall clock time and date at job start Mon Mar 30 2020 07:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00320 * 2 1 4 4 H 1.48503 * 109.47135 * 274.03367 * 3 2 1 5 5 H 1.48505 * 109.46898 * 34.03125 * 3 2 1 6 6 H 1.48496 * 109.47132 * 154.02998 * 3 2 1 7 7 C 1.37884 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99625 * 351.99776 * 7 2 1 9 9 C 1.50692 * 120.00024 * 172.27791 * 7 2 1 10 10 C 1.53007 * 115.54995 * 298.16895 * 9 7 2 11 11 N 1.46892 * 109.47042 * 302.73473 * 10 9 7 12 12 C 1.46897 * 111.00215 * 273.71462 * 11 10 9 13 13 H 1.08998 * 109.46963 * 25.03209 * 12 11 10 14 14 C 1.53001 * 109.47338 * 145.03541 * 12 11 10 15 15 C 1.52998 * 117.49616 * 13.03872 * 14 12 11 16 16 C 1.53005 * 117.49526 * 304.38347 * 14 12 11 17 17 C 1.53006 * 109.46997 * 265.03269 * 12 11 10 18 18 C 1.53006 * 109.47021 * 174.53485 * 17 12 11 19 19 C 1.52995 * 109.47160 * 179.97438 * 18 17 12 20 20 C 1.53003 * 109.46696 * 60.00064 * 19 18 17 21 21 C 1.52994 * 109.47564 * 299.99884 * 20 19 18 22 22 C 1.52998 * 109.47055 * 59.99941 * 21 20 19 23 23 C 1.52998 * 117.50118 * 152.50256 * 9 7 2 24 24 C 1.53001 * 117.50051 * 83.84158 * 9 7 2 25 25 H 0.97005 * 119.99800 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46728 * 62.73564 * 10 9 7 27 27 H 1.08996 * 109.46723 * 182.73141 * 10 9 7 28 28 H 1.00896 * 111.00046 * 37.67087 * 11 10 9 29 29 H 1.09000 * 115.55310 * 158.71681 * 14 12 11 30 30 H 1.08999 * 117.50361 * 0.02562 * 15 14 12 31 31 H 1.09011 * 117.49358 * 145.02434 * 15 14 12 32 32 H 1.09000 * 117.50010 * 214.98483 * 16 14 12 33 33 H 1.09007 * 117.49722 * 359.97438 * 16 14 12 34 34 H 1.08997 * 109.46720 * 294.53630 * 17 12 11 35 35 H 1.08997 * 109.46943 * 300.00442 * 18 17 12 36 36 H 1.09007 * 109.46662 * 60.00073 * 18 17 12 37 37 H 1.08997 * 109.47530 * 300.00695 * 19 18 17 38 38 H 1.08993 * 109.47040 * 179.97438 * 19 18 17 39 39 H 1.09001 * 109.46945 * 179.97438 * 20 19 18 40 40 H 1.09004 * 109.46950 * 60.00252 * 20 19 18 41 41 H 1.09004 * 109.47287 * 300.00161 * 21 20 19 42 42 H 1.08998 * 109.47227 * 180.02562 * 21 20 19 43 43 H 1.08999 * 109.47481 * 179.97438 * 22 21 20 44 44 H 1.09004 * 109.47140 * 60.00468 * 22 21 20 45 45 H 1.08998 * 117.49730 * 359.97438 * 23 9 7 46 46 H 1.09000 * 117.50510 * 145.01898 * 23 9 7 47 47 H 1.09004 * 117.50223 * 214.97985 * 24 9 7 48 48 H 1.09001 * 117.49625 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4115 2.0956 -1.3966 5 1 1.4919 2.6266 0.7836 6 1 3.5867 1.4170 0.6131 7 6 2.0045 -1.1941 -0.0005 8 1 1.4724 -2.1249 0.1293 9 6 3.5012 -1.2000 -0.1759 10 6 4.0125 -0.6336 -1.5021 11 7 3.4113 -1.3779 -2.6167 12 6 4.1967 -2.5785 -2.9324 13 1 4.7522 -2.8920 -2.0486 14 6 3.2560 -3.7032 -3.3692 15 6 1.8088 -3.3276 -3.6937 16 6 2.1308 -4.0957 -2.4095 17 6 5.1759 -2.2639 -4.0653 18 6 6.0864 -3.4705 -4.3021 19 6 7.0651 -3.1563 -5.4353 20 6 7.9153 -1.9430 -5.0530 21 6 7.0050 -0.7364 -4.8161 22 6 6.0262 -1.0507 -3.6829 23 6 4.2805 -2.3620 0.4432 24 6 4.3593 -0.9674 1.0693 25 1 -0.4850 0.8401 0.0004 26 1 3.7378 0.4186 -1.5777 27 1 5.0974 -0.7298 -1.5441 28 1 2.4515 -1.6161 -2.4165 29 1 3.7143 -4.4971 -3.9589 30 1 1.5269 -2.2792 -3.5965 31 1 1.3148 -3.8747 -4.4968 32 1 1.8487 -5.1477 -2.3680 33 1 2.0612 -3.5529 -1.4667 34 1 4.6191 -2.0444 -4.9762 35 1 6.6431 -3.6900 -3.3911 36 1 5.4806 -4.3347 -4.5749 37 1 6.5082 -2.9369 -6.3462 38 1 7.7140 -4.0156 -5.6037 39 1 8.6130 -1.7193 -5.8601 40 1 8.4724 -2.1623 -4.1420 41 1 6.4479 -0.5171 -5.7270 42 1 7.6108 0.1280 -4.5441 43 1 5.3779 -0.1910 -3.5138 44 1 6.5832 -1.2699 -2.7720 45 1 3.7107 -3.1221 0.9776 46 1 5.1576 -2.7228 -0.0941 47 1 5.2883 -0.4112 0.9437 48 1 3.8412 -0.8098 2.0152 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724004708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:51 Heat of formation + Delta-G solvation = 28.770404 kcal Electronic energy + Delta-G solvation = -23603.992730 eV Core-core repulsion = 20659.288155 eV Total energy + Delta-G solvation = -2944.704574 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.50352 -37.42543 -36.50221 -33.22788 -32.15366 -30.98062 -30.28427 -26.75606 -25.42998 -23.53892 -22.48390 -21.99088 -21.48084 -21.32896 -19.58385 -18.97613 -18.88492 -16.49753 -15.78394 -15.38606 -14.95232 -14.67392 -14.17397 -13.95648 -13.79382 -13.70751 -13.25551 -12.90367 -12.40680 -12.28466 -12.11303 -12.02485 -11.82817 -11.38542 -11.14490 -10.98901 -10.93535 -10.84430 -10.79599 -10.58496 -10.50922 -10.32943 -10.06818 -9.98668 -9.75932 -9.58824 -9.50913 -9.36165 -9.03803 -8.65964 -8.40683 -7.42723 -6.14118 -4.15136 3.31129 3.40683 3.47646 4.29134 4.42934 4.77605 4.82370 4.89943 4.92756 5.16220 5.17088 5.28722 5.41456 5.44647 5.52490 5.52960 5.64405 5.68675 5.70258 5.77076 5.80099 5.81991 5.92066 5.98173 6.11910 6.16494 6.18515 6.21227 6.25343 6.27598 6.32292 6.37919 6.40742 6.49106 6.50229 6.52457 6.69301 6.73848 6.76309 6.81031 6.82123 6.91529 7.08486 7.16460 7.70573 7.96559 8.36965 8.49359 8.88736 9.50450 10.96579 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.006505 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.042489 B = 4303.353626 C = 4897.014788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.085 3.915 3 Si 0.871 3.129 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.252 1.252 7 C -0.488 4.488 8 H 0.075 0.925 9 C -0.027 4.027 10 C 0.086 3.914 11 N -0.679 5.679 12 C 0.120 3.880 13 H 0.053 0.947 14 C -0.160 4.160 15 C -0.177 4.177 16 C -0.184 4.184 17 C -0.067 4.067 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.112 4.112 23 C -0.184 4.184 24 C -0.198 4.198 25 H 0.265 0.735 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.363 0.637 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.916 -5.184 -9.136 15.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.119 4.119 3 Si 0.699 3.301 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.176 1.176 7 C -0.525 4.525 8 H 0.093 0.907 9 C -0.029 4.029 10 C -0.044 4.044 11 N -0.315 5.315 12 C 0.010 3.990 13 H 0.071 0.929 14 C -0.179 4.179 15 C -0.214 4.214 16 C -0.221 4.221 17 C -0.087 4.087 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.150 4.150 23 C -0.221 4.221 24 C -0.236 4.236 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.189 0.811 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.000 -4.683 -9.623 16.079 hybrid contribution 0.142 0.294 0.915 0.971 sum 12.142 -4.390 -8.708 15.573 Atomic orbital electron populations 1.69914 1.06411 1.27200 1.49194 1.24901 0.94430 0.99048 0.93505 0.86960 0.81347 0.83484 0.78318 1.20215 1.22355 1.17613 1.20224 0.87231 0.94436 1.50657 0.90748 1.20284 0.94362 0.97563 0.90695 1.21852 0.96468 0.97234 0.88836 1.61016 1.07862 1.22011 1.40573 1.21018 0.93186 0.88600 0.96244 0.92927 1.22556 0.90593 1.00647 1.04104 1.22969 0.97545 1.01993 0.98879 1.23138 1.02552 1.00281 0.96147 1.21071 0.94781 0.93933 0.98884 1.21636 0.97294 0.98223 0.98213 1.21503 0.97775 0.97452 0.98665 1.21532 0.97694 0.95581 1.00777 1.21555 0.97638 0.97089 0.99391 1.21637 0.97077 0.99246 0.96991 1.22755 1.01834 0.91786 1.05750 1.22999 1.01563 0.98810 1.00253 0.92556 0.92298 0.92911 0.81059 0.88322 0.87336 0.89822 0.89873 0.86897 0.91127 0.92430 0.92129 0.92230 0.92687 0.92781 0.92367 0.92258 0.92675 0.90427 0.92929 0.90238 0.91353 0.91631 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.96 55.43 0.77 -25.22 16 2 C 0.08 2.32 5.46 -17.82 -0.10 2.22 16 3 Si 0.87 21.16 24.86 -169.99 -4.23 16.93 16 4 H -0.28 -6.68 7.01 56.52 0.40 -6.28 16 5 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16 6 H -0.25 -5.85 5.89 56.52 0.33 -5.52 16 7 C -0.49 -12.72 7.86 -34.44 -0.27 -13.00 16 8 H 0.07 2.13 7.48 -52.49 -0.39 1.74 16 9 C -0.03 -0.59 0.96 -155.66 -0.15 -0.74 16 10 C 0.09 1.74 4.19 -3.82 -0.02 1.73 16 11 N -0.68 -12.94 5.65 -106.73 -0.60 -13.54 16 12 C 0.12 1.93 2.05 -67.71 -0.14 1.79 16 13 H 0.05 0.91 5.70 -51.93 -0.30 0.62 16 14 C -0.16 -2.45 5.51 -90.62 -0.50 -2.95 16 15 C -0.18 -2.85 9.66 -26.70 -0.26 -3.11 16 16 C -0.18 -3.08 9.83 -26.69 -0.26 -3.34 16 17 C -0.07 -0.94 1.94 -90.61 -0.18 -1.12 16 18 C -0.12 -1.38 5.03 -26.73 -0.13 -1.52 16 19 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 20 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 21 C -0.12 -1.41 5.92 -26.74 -0.16 -1.57 16 22 C -0.11 -1.57 3.77 -26.73 -0.10 -1.67 16 23 C -0.18 -3.66 9.25 -26.69 -0.25 -3.91 16 24 C -0.20 -4.15 8.33 -26.69 -0.22 -4.37 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.06 1.31 4.79 -51.93 -0.25 1.06 16 27 H 0.05 0.98 5.49 -51.93 -0.29 0.70 16 28 H 0.36 7.68 3.80 -39.29 -0.15 7.53 16 29 H 0.10 1.34 6.43 -51.93 -0.33 1.01 16 30 H 0.11 1.99 6.15 -51.93 -0.32 1.67 16 31 H 0.08 1.19 8.14 -51.92 -0.42 0.76 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.11 2.26 6.82 -51.93 -0.35 1.90 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 1.24 6.47 -51.93 -0.34 0.90 16 44 H 0.05 0.76 7.43 -51.93 -0.39 0.37 16 45 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 46 H 0.07 1.24 7.01 -51.93 -0.36 0.88 16 47 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 48 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 344.25 15.07 5.19 5.19 Total: -1.00 -26.60 344.25 -10.42 -37.01 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -8.50 Total: 13.97 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: -3.05 Total: -34.34 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.17 Total: -38.76 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.23 Total: 16.93 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.60 -10.42 -37.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724004708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.785 kcal (2) G-P(sol) polarization free energy of solvation -26.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds