Wall clock time and date at job start Mon Mar 30 2020 07:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35824 * 117.00265 * 2 1 4 4 C 1.38584 * 120.12054 * 359.97438 * 3 2 1 5 5 C 1.38180 * 120.06511 * 180.02562 * 4 3 2 6 6 C 1.38425 * 120.31703 * 0.02562 * 5 4 3 7 7 C 1.37959 * 120.25100 * 359.97438 * 6 5 4 8 8 C 1.39387 * 119.92667 * 359.97438 * 7 6 5 9 9 C 1.48230 * 120.15415 * 180.02562 * 8 7 6 10 10 N 1.33984 * 126.33914 * 179.69140 * 9 8 7 11 11 N 1.28567 * 109.80045 * 179.81673 * 10 9 8 12 12 N 1.28906 * 109.77099 * 0.45262 * 11 10 9 13 13 C 1.37389 * 126.39744 * 179.76433 * 12 11 10 14 14 H 1.08000 * 120.00027 * 179.97438 * 13 12 11 15 15 C 1.39079 * 119.99648 * 359.95304 * 13 12 11 16 16 N 1.31178 * 120.00225 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99813 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47065 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47084 * 120.00004 * 17 15 13 20 20 H 1.48495 * 109.47141 * 239.99875 * 17 15 13 21 21 N 1.32126 * 126.34542 * 0.02562 * 9 8 7 22 22 H 1.08995 * 109.47671 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47022 * 300.00242 * 1 2 3 24 24 H 1.09008 * 109.46823 * 59.99492 * 1 2 3 25 25 H 1.08003 * 119.96954 * 0.04743 * 4 3 2 26 26 H 1.08000 * 119.84120 * 180.27672 * 5 4 3 27 27 H 1.08001 * 119.87067 * 180.02562 * 6 5 4 28 28 H 1.07997 * 120.04069 * 180.02562 * 7 6 5 29 29 H 0.97000 * 119.99995 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2934 2.3741 -0.0005 5 6 1.9219 3.6046 -0.0011 6 6 3.3040 3.6833 -0.0016 7 6 4.0656 2.5330 -0.0011 8 6 3.4423 1.2863 0.0005 9 6 4.2557 0.0471 0.0017 10 7 3.7892 -1.2089 0.0091 11 7 4.7714 -2.0384 0.0039 12 7 5.8873 -1.3929 0.0028 13 6 7.1467 -1.9419 0.0022 14 1 8.0155 -1.3003 0.0009 15 6 7.3027 -3.3239 0.0038 16 7 6.2475 -4.1032 0.0053 17 14 9.0151 -4.0704 0.0038 18 1 10.0284 -2.9849 0.0025 19 1 9.1898 -4.9085 1.2172 20 1 9.1884 -4.9114 -1.2078 21 7 5.5751 -0.0235 0.0018 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 0.2147 2.3193 -0.0002 26 1 1.3322 4.5093 0.0030 27 1 3.7877 4.6489 -0.0016 28 1 5.1436 2.5984 -0.0011 29 1 6.3564 -5.0670 0.0068 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000414726.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:22 Heat of formation + Delta-G solvation = 111.544767 kcal Electronic energy + Delta-G solvation = -16948.091412 eV Core-core repulsion = 14067.875050 eV Total energy + Delta-G solvation = -2880.216362 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.98498 -39.58244 -36.94044 -34.43293 -32.15305 -31.14958 -29.79520 -29.47199 -26.90477 -26.17040 -23.11300 -22.26015 -21.22253 -20.15007 -18.25293 -17.46045 -15.71640 -15.61482 -15.44322 -15.35164 -14.61686 -14.42837 -14.13516 -13.30926 -13.19557 -12.47930 -12.12609 -12.10538 -11.83776 -11.49010 -11.41458 -11.08795 -10.76600 -10.70007 -10.57188 -10.27995 -9.63936 -9.23427 -8.84671 -8.73416 -8.31699 -7.59752 -6.96689 -4.80654 1.44274 1.77065 2.77789 2.90879 3.01246 3.24686 3.56059 3.71860 3.82891 4.32033 4.55998 4.70125 5.04267 5.12712 5.28629 5.33024 5.40142 5.58807 5.66309 5.74815 5.98910 6.16437 6.32084 6.56793 6.71501 6.75810 6.83532 7.08668 7.42094 7.63365 7.85043 7.89372 8.23567 9.00950 9.98900 10.48704 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.040458 B = 0.005837 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.909967 B = 4796.125264 C = 5472.889237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.274 6.274 3 C 0.151 3.849 4 C -0.217 4.217 5 C -0.086 4.086 6 C -0.164 4.164 7 C -0.058 4.058 8 C -0.006 4.006 9 C 0.166 3.834 10 N -0.358 5.358 11 N -0.076 5.076 12 N 0.005 4.995 13 C -0.276 4.276 14 H 0.133 0.867 15 C 0.042 3.958 16 N -0.750 5.750 17 Si 0.957 3.043 18 H -0.256 1.256 19 H -0.268 1.268 20 H -0.268 1.268 21 N -0.405 5.405 22 H 0.097 0.903 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.127 0.873 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.135 0.865 29 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.353 8.327 -0.016 9.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.185 6.185 3 C 0.102 3.898 4 C -0.236 4.236 5 C -0.105 4.105 6 C -0.182 4.182 7 C -0.079 4.079 8 C -0.010 4.010 9 C -0.113 4.113 10 N -0.224 5.224 11 N -0.060 5.060 12 N 0.111 4.889 13 C -0.422 4.422 14 H 0.150 0.850 15 C -0.180 4.180 16 N -0.379 5.379 17 Si 0.779 3.221 18 H -0.180 1.180 19 H -0.193 1.193 20 H -0.193 1.193 21 N -0.256 5.256 22 H 0.116 0.884 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.144 0.856 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.153 0.847 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.466 7.295 -0.011 9.115 hybrid contribution 0.377 0.230 -0.001 0.442 sum -5.089 7.525 -0.011 9.084 Atomic orbital electron populations 1.23040 0.79942 1.03718 1.00359 1.86503 1.19629 1.25199 1.87186 1.19042 0.91180 0.84838 0.94738 1.21071 0.99664 0.92107 1.10796 1.20877 0.94606 0.96604 0.98453 1.20884 0.93711 0.97989 1.05631 1.21074 1.00542 0.90094 0.96169 1.16835 0.88259 0.89884 1.06004 1.22619 0.89348 0.93126 1.06177 1.75366 1.24509 0.97608 1.24882 1.78920 0.87116 1.18865 1.21111 1.48988 1.07237 1.00628 1.32029 1.20316 0.80278 0.91187 1.50379 0.84960 1.25962 1.01438 0.95732 0.94859 1.70144 1.30157 1.06176 1.31384 0.85405 0.78469 0.79391 0.78880 1.17971 1.19340 1.19335 1.78659 1.13135 0.96662 1.37122 0.88422 0.93263 0.93271 0.85553 0.86203 0.85952 0.84675 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 15 2 O -0.27 -5.49 8.82 -19.19 -0.17 -5.66 15 3 C 0.15 2.92 6.69 -38.84 -0.26 2.66 15 4 C -0.22 -3.25 9.03 -39.47 -0.36 -3.61 15 5 C -0.09 -1.16 10.03 -39.53 -0.40 -1.55 15 6 C -0.16 -2.37 10.03 -39.61 -0.40 -2.76 15 7 C -0.06 -1.06 9.69 -39.26 -0.38 -1.44 15 8 C -0.01 -0.12 5.89 -104.75 -0.62 -0.74 15 9 C 0.17 4.45 7.90 -156.16 -1.23 3.22 15 10 N -0.36 -10.47 10.84 32.15 0.35 -10.12 15 11 N -0.08 -2.34 11.11 60.35 0.67 -1.67 15 12 N 0.00 0.14 4.39 31.64 0.14 0.28 15 13 C -0.28 -7.36 10.63 -14.75 -0.16 -7.52 15 14 H 0.13 3.19 7.83 -52.49 -0.41 2.78 15 15 C 0.04 1.04 5.50 -17.52 -0.10 0.94 15 16 N -0.75 -19.90 11.90 55.50 0.66 -19.24 15 17 Si 0.96 17.77 29.55 -169.99 -5.02 12.74 15 18 H -0.26 -4.54 7.11 56.52 0.40 -4.14 15 19 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 20 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 21 N -0.40 -11.29 12.39 32.16 0.40 -10.89 15 22 H 0.10 1.19 8.14 -51.93 -0.42 0.77 15 23 H 0.05 0.56 7.66 -51.93 -0.40 0.17 15 24 H 0.05 0.56 7.66 -51.92 -0.40 0.17 15 25 H 0.13 1.51 6.30 -52.48 -0.33 1.17 15 26 H 0.12 1.19 8.06 -52.49 -0.42 0.77 15 27 H 0.12 1.39 8.06 -52.49 -0.42 0.97 15 28 H 0.14 2.44 7.87 -52.49 -0.41 2.03 15 29 H 0.29 6.74 8.30 -40.82 -0.34 6.41 15 LS Contribution 265.42 15.07 4.00 4.00 Total: -1.00 -33.69 265.42 -4.23 -37.93 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -2.35 Total: 2.12 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -2.90 Total: -9.48 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 2.22 Total: -41.65 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.17 Total: -5.66 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.02 Total: 12.74 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -33.69 -4.23 -37.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000414726.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.470 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds