Wall clock time and date at job start Mon Mar 30 2020 07:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35824 * 117.00265 * 2 1 4 4 C 1.38584 * 120.12054 * 359.97438 * 3 2 1 5 5 C 1.38180 * 120.06511 * 180.02562 * 4 3 2 6 6 C 1.38425 * 120.31703 * 0.02562 * 5 4 3 7 7 C 1.37959 * 120.25100 * 359.97438 * 6 5 4 8 8 C 1.39387 * 119.92667 * 359.97438 * 7 6 5 9 9 C 1.48230 * 120.15415 * 180.02562 * 8 7 6 10 10 N 1.33984 * 126.33914 * 179.69140 * 9 8 7 11 11 N 1.28567 * 109.80045 * 179.81673 * 10 9 8 12 12 N 1.28906 * 109.77099 * 0.45262 * 11 10 9 13 13 C 1.37389 * 126.39744 * 179.76433 * 12 11 10 14 14 H 1.08000 * 120.00027 * 179.97438 * 13 12 11 15 15 C 1.39079 * 119.99648 * 359.95304 * 13 12 11 16 16 N 1.31178 * 120.00225 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99813 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47065 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47084 * 120.00004 * 17 15 13 20 20 H 1.48495 * 109.47141 * 239.99875 * 17 15 13 21 21 N 1.32126 * 126.34542 * 0.02562 * 9 8 7 22 22 H 1.08995 * 109.47671 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47022 * 300.00242 * 1 2 3 24 24 H 1.09008 * 109.46823 * 59.99492 * 1 2 3 25 25 H 1.08003 * 119.96954 * 0.04743 * 4 3 2 26 26 H 1.08000 * 119.84120 * 180.27672 * 5 4 3 27 27 H 1.08001 * 119.87067 * 180.02562 * 6 5 4 28 28 H 1.07997 * 120.04069 * 180.02562 * 7 6 5 29 29 H 0.97000 * 119.99995 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2934 2.3741 -0.0005 5 6 1.9219 3.6046 -0.0011 6 6 3.3040 3.6833 -0.0016 7 6 4.0656 2.5330 -0.0011 8 6 3.4423 1.2863 0.0005 9 6 4.2557 0.0471 0.0017 10 7 3.7892 -1.2089 0.0091 11 7 4.7714 -2.0384 0.0039 12 7 5.8873 -1.3929 0.0028 13 6 7.1467 -1.9419 0.0022 14 1 8.0155 -1.3003 0.0009 15 6 7.3027 -3.3239 0.0038 16 7 6.2475 -4.1032 0.0053 17 14 9.0151 -4.0704 0.0038 18 1 10.0284 -2.9849 0.0025 19 1 9.1898 -4.9085 1.2172 20 1 9.1884 -4.9114 -1.2078 21 7 5.5751 -0.0235 0.0018 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 0.2147 2.3193 -0.0002 26 1 1.3322 4.5093 0.0030 27 1 3.7877 4.6489 -0.0016 28 1 5.1436 2.5984 -0.0011 29 1 6.3564 -5.0670 0.0068 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000414726.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:22 Heat of formation + Delta-G solvation = 87.467028 kcal Electronic energy + Delta-G solvation = -16949.135502 eV Core-core repulsion = 14067.875050 eV Total energy + Delta-G solvation = -2881.260452 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.02749 -40.90912 -38.23856 -36.40575 -33.88179 -33.17182 -31.20497 -31.00643 -28.18681 -28.01928 -24.69349 -24.12390 -22.69016 -21.87291 -20.13198 -18.83040 -17.61559 -17.12764 -16.87539 -16.74781 -16.43689 -15.94474 -15.40303 -14.72236 -14.44980 -14.16639 -13.88591 -13.77466 -13.31330 -13.09287 -12.89068 -12.42574 -12.04078 -12.03691 -11.90205 -11.86640 -11.67910 -11.07943 -10.94506 -10.79211 -9.72840 -9.02780 -8.87697 -6.88831 0.05337 0.50974 0.97856 1.34361 1.61362 1.61977 1.94931 2.09537 2.44426 2.53701 2.75424 2.98910 3.52479 3.87533 4.03966 4.24807 4.31321 4.44020 4.45398 4.57186 4.72332 4.75092 4.79886 4.99471 5.17925 5.33517 5.52039 5.66556 5.71829 5.86400 5.93114 6.23133 6.62494 6.94821 8.12165 8.38675 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.040458 B = 0.005837 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.909967 B = 4796.125264 C = 5472.889237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.321 6.321 3 C 0.136 3.864 4 C -0.209 4.209 5 C -0.061 4.061 6 C -0.155 4.155 7 C -0.066 4.066 8 C -0.068 4.068 9 C 0.172 3.828 10 N -0.392 5.392 11 N -0.126 5.126 12 N -0.009 5.009 13 C -0.300 4.300 14 H 0.151 0.849 15 C -0.001 4.001 16 N -0.790 5.790 17 Si 1.047 2.953 18 H -0.239 1.239 19 H -0.259 1.259 20 H -0.258 1.258 21 N -0.433 5.433 22 H 0.101 0.899 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.163 0.837 26 H 0.173 0.827 27 H 0.162 0.838 28 H 0.123 0.877 29 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.485 10.431 -0.019 11.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.233 6.233 3 C 0.088 3.912 4 C -0.228 4.228 5 C -0.080 4.080 6 C -0.173 4.173 7 C -0.086 4.086 8 C -0.072 4.072 9 C -0.107 4.107 10 N -0.256 5.256 11 N -0.109 5.109 12 N 0.098 4.902 13 C -0.447 4.447 14 H 0.168 0.832 15 C -0.219 4.219 16 N -0.419 5.419 17 Si 0.861 3.139 18 H -0.162 1.162 19 H -0.183 1.183 20 H -0.183 1.183 21 N -0.283 5.283 22 H 0.119 0.881 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.180 0.820 26 H 0.190 0.810 27 H 0.179 0.821 28 H 0.141 0.859 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.679 9.432 -0.013 11.010 hybrid contribution 0.326 -0.316 0.000 0.454 sum -5.353 9.116 -0.014 10.572 Atomic orbital electron populations 1.23347 0.77089 1.04871 1.02508 1.86432 1.22864 1.26562 1.87464 1.19315 0.90622 0.86157 0.95148 1.21499 1.01244 0.90976 1.09056 1.21521 0.94417 0.97790 0.94238 1.21316 0.94377 0.97929 1.03628 1.21153 1.00497 0.90379 0.96587 1.17211 0.89547 0.89062 1.11361 1.23577 0.89422 0.94229 1.03486 1.75259 1.24533 0.98650 1.27202 1.78816 0.87863 1.19936 1.24280 1.49392 1.07799 1.01236 1.31753 1.21268 0.80207 0.92881 1.50369 0.83172 1.27437 1.06616 0.95015 0.92803 1.70253 1.33502 1.07304 1.30828 0.84184 0.71746 0.78587 0.79387 1.16153 1.18278 1.18266 1.78561 1.14116 0.96368 1.39293 0.88069 0.90957 0.90961 0.81962 0.80977 0.82054 0.85875 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 15 2 O -0.32 -13.22 8.82 -91.57 -0.81 -14.03 15 3 C 0.14 5.27 6.69 22.75 0.15 5.42 15 4 C -0.21 -5.54 9.03 22.34 0.20 -5.34 15 5 C -0.06 -1.32 10.03 22.30 0.22 -1.10 15 6 C -0.15 -3.93 10.03 22.25 0.22 -3.70 15 7 C -0.07 -2.40 9.69 22.48 0.22 -2.18 15 8 C -0.07 -3.06 5.89 -19.95 -0.12 -3.18 15 9 C 0.17 9.84 7.90 137.23 1.08 10.92 15 10 N -0.39 -24.58 10.84 -52.20 -0.57 -25.15 15 11 N -0.13 -8.28 11.11 37.02 0.41 -7.87 15 12 N -0.01 -0.54 4.39 -53.83 -0.24 -0.78 15 13 C -0.30 -16.53 10.63 84.02 0.89 -15.64 15 14 H 0.15 7.38 7.83 -2.91 -0.02 7.35 15 15 C 0.00 -0.03 5.50 84.99 0.47 0.44 15 16 N -0.79 -43.19 11.90 21.67 0.26 -42.93 15 17 Si 1.05 35.54 29.55 68.60 2.03 37.57 15 18 H -0.24 -7.41 7.11 99.48 0.71 -6.70 15 19 H -0.26 -8.35 7.11 99.48 0.71 -7.64 15 20 H -0.26 -8.34 7.11 99.48 0.71 -7.64 15 21 N -0.43 -25.62 12.39 -52.16 -0.65 -26.26 15 22 H 0.10 2.47 8.14 -2.39 -0.02 2.45 15 23 H 0.07 1.50 7.66 -2.39 -0.02 1.48 15 24 H 0.07 1.50 7.66 -2.38 -0.02 1.48 15 25 H 0.16 3.06 6.30 -2.91 -0.02 3.04 15 26 H 0.17 2.07 8.06 -2.91 -0.02 2.04 15 27 H 0.16 2.84 8.06 -2.91 -0.02 2.82 15 28 H 0.12 4.62 7.87 -2.91 -0.02 4.60 15 29 H 0.30 14.33 8.30 -92.71 -0.77 13.57 15 Total: -1.00 -81.50 265.42 6.08 -75.42 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 1.18 Total: 16.86 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 4.46 Total: -12.83 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -0.78 Total: -102.99 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.81 Total: -14.03 kcal Atomic # 14 Polarization: 35.54 SS G_CDS: 2.03 Total: 37.57 kcal Total: -81.50 6.08 -75.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000414726.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.884 kcal (2) G-P(sol) polarization free energy of solvation -81.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds