Wall clock time and date at job start Mon Mar 30 2020 07:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47603 * 59.99854 * 9 7 2 11 11 O 1.42905 * 109.47687 * 299.97897 * 9 7 2 12 12 C 1.42908 * 114.09513 * 178.87050 * 11 9 7 13 13 H 1.09003 * 109.46891 * 301.15631 * 12 11 9 14 14 C 1.53001 * 109.48708 * 181.13131 * 12 11 9 15 15 O 1.42896 * 109.46901 * 65.04240 * 14 12 11 16 16 C 1.53090 * 109.42191 * 61.13652 * 12 11 9 17 17 H 1.09001 * 109.52239 * 62.30646 * 16 12 11 18 18 O 1.42904 * 109.57190 * 182.45774 * 16 12 11 19 19 C 1.53177 * 109.16452 * 302.39494 * 16 12 11 20 20 H 1.09000 * 109.61909 * 297.07004 * 19 16 12 21 21 O 1.42905 * 109.54161 * 176.84857 * 19 16 12 22 22 C 1.53089 * 109.48156 * 180.02562 * 9 7 2 23 23 H 1.08998 * 109.52190 * 57.62507 * 22 9 7 24 24 O 1.42905 * 109.52378 * 297.49479 * 22 9 7 25 25 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46648 * 185.03501 * 14 12 11 27 27 H 1.08999 * 109.46884 * 305.04050 * 14 12 11 28 28 H 0.96703 * 113.99976 * 179.97438 * 15 14 12 29 29 H 0.96697 * 114.00243 * 179.71899 * 18 16 12 30 30 H 0.96696 * 113.99756 * 180.44572 * 21 19 16 31 31 H 0.96703 * 113.99237 * 60.00166 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6248 -2.5572 -0.8896 11 8 0.4294 -2.5750 1.1673 12 6 -0.3518 -3.7685 1.2541 13 1 -0.9992 -3.8433 0.3804 14 6 -1.2078 -3.7271 2.5216 15 8 -2.1557 -2.6625 2.4216 16 6 0.5785 -4.9832 1.3057 17 1 1.1983 -4.9296 2.2007 18 8 -0.1997 -6.1814 1.3349 19 6 1.4735 -4.9843 0.0625 20 1 0.8583 -5.0886 -0.8312 21 8 2.3953 -6.0737 0.1381 22 6 2.2458 -3.6629 0.0018 23 1 2.8999 -3.5820 0.8699 24 8 3.0297 -3.6225 -1.1923 25 1 -0.4850 -0.8401 -0.0004 26 1 -1.7356 -4.6741 2.6345 27 1 -0.5667 -3.5628 3.3877 28 1 -2.7339 -2.5771 3.1920 29 1 0.3269 -6.9919 1.3637 30 1 2.9989 -6.1311 -0.6152 31 1 3.5424 -2.8095 -1.2988 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004134448.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:12 Heat of formation + Delta-G solvation = -250.384516 kcal Electronic energy + Delta-G solvation = -18070.255525 eV Core-core repulsion = 14930.676449 eV Total energy + Delta-G solvation = -3139.579075 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.60831 -36.81824 -36.49702 -35.62529 -34.89874 -32.78958 -30.20096 -29.66217 -26.46760 -24.28436 -22.30008 -21.30425 -20.07829 -17.99154 -17.35901 -16.92973 -16.53570 -16.34984 -15.73350 -14.86658 -14.49156 -14.25831 -13.80863 -13.67183 -13.25948 -12.70726 -12.65817 -12.17173 -12.04811 -11.60408 -11.15099 -10.91419 -10.77462 -10.33474 -10.19049 -9.96858 -9.68800 -9.62967 -9.50760 -8.75598 -8.52283 -8.31064 -6.46164 -4.30039 3.38923 3.41711 3.56909 4.08132 4.11055 4.44308 4.59176 4.76870 4.90614 5.22131 5.30924 5.46299 5.56952 5.62316 5.69973 5.81127 5.89136 6.10573 6.20977 6.28302 6.35642 6.93190 7.68835 7.74769 7.83831 8.02323 8.07294 8.26961 8.52143 8.74504 9.54718 10.95102 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.023938 B = 0.011083 C = 0.007888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.421643 B = 2525.821171 C = 3548.948654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.036 3.964 3 Si 1.074 2.926 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.613 4.613 8 H 0.058 0.942 9 C 0.173 3.827 10 H 0.017 0.983 11 O -0.349 6.349 12 C 0.090 3.910 13 H 0.060 0.940 14 C 0.094 3.906 15 O -0.556 6.556 16 C 0.096 3.904 17 H 0.068 0.932 18 O -0.560 6.560 19 C 0.081 3.919 20 H 0.065 0.935 21 O -0.572 6.572 22 C 0.061 3.939 23 H 0.058 0.942 24 O -0.573 6.573 25 H 0.286 0.714 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.371 0.629 29 H 0.382 0.618 30 H 0.386 0.614 31 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.440 -8.696 2.799 9.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.175 4.175 3 Si 0.901 3.099 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.650 4.650 8 H 0.076 0.924 9 C 0.118 3.882 10 H 0.035 0.965 11 O -0.268 6.268 12 C 0.030 3.970 13 H 0.078 0.922 14 C 0.016 3.984 15 O -0.360 6.360 16 C 0.037 3.963 17 H 0.086 0.914 18 O -0.366 6.366 19 C 0.021 3.979 20 H 0.083 0.917 21 O -0.379 6.379 22 C 0.001 3.999 23 H 0.076 0.924 24 O -0.381 6.381 25 H 0.098 0.902 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.216 0.784 29 H 0.230 0.770 30 H 0.234 0.766 31 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 0.451 -7.103 2.801 7.648 hybrid contribution 1.058 -1.788 -0.006 2.078 sum 1.510 -8.891 2.795 9.441 Atomic orbital electron populations 1.70586 1.06895 1.32559 1.40486 1.25892 0.96530 1.02691 0.92396 0.83494 0.74591 0.74888 0.76916 1.21253 1.21350 1.20781 1.21712 0.93544 0.90363 1.59363 0.92358 1.20671 0.88130 0.94208 0.85208 0.96519 1.88563 1.57466 1.34320 1.46501 1.21732 0.91666 0.85326 0.98242 0.92166 1.22013 0.90329 0.89486 0.96525 1.86662 1.50349 1.53873 1.45070 1.22406 0.91810 0.86180 0.95941 0.91436 1.86406 1.37124 1.15854 1.97191 1.22681 0.90537 0.85784 0.98868 0.91741 1.86249 1.51011 1.50392 1.50210 1.23088 0.94113 0.95115 0.87571 0.92368 1.86128 1.63622 1.45293 1.43071 0.90211 0.92385 0.93512 0.78370 0.77024 0.76552 0.76085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.63 13.53 55.43 0.75 -25.88 16 2 C 0.04 1.02 5.40 -17.82 -0.10 0.93 16 3 Si 1.07 24.57 29.90 -169.99 -5.08 19.49 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.61 -16.75 8.20 -34.44 -0.28 -17.03 16 8 H 0.06 1.51 7.09 -52.48 -0.37 1.14 16 9 C 0.17 4.41 1.83 -27.83 -0.05 4.36 16 10 H 0.02 0.48 8.01 -51.93 -0.42 0.06 16 11 O -0.35 -8.93 8.69 -40.01 -0.35 -9.28 16 12 C 0.09 1.90 2.65 -26.68 -0.07 1.83 16 13 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 14 C 0.09 1.72 6.65 37.16 0.25 1.97 16 15 O -0.56 -10.70 13.63 -40.01 -0.55 -11.25 16 16 C 0.10 1.77 2.78 -26.59 -0.07 1.69 16 17 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 18 O -0.56 -8.94 12.68 -41.54 -0.53 -9.47 16 19 C 0.08 1.51 2.93 -26.55 -0.08 1.43 16 20 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 21 O -0.57 -9.31 12.94 -51.81 -0.67 -9.98 16 22 C 0.06 1.30 2.77 -26.59 -0.07 1.22 16 23 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 24 O -0.57 -11.36 12.92 -41.49 -0.54 -11.90 16 25 H 0.29 8.95 6.47 -40.82 -0.26 8.69 16 26 H 0.06 0.92 7.62 -51.93 -0.40 0.52 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.37 4.85 9.12 45.56 0.42 5.27 16 29 H 0.38 4.77 8.71 45.56 0.40 5.17 16 30 H 0.39 5.30 8.72 45.56 0.40 5.69 16 31 H 0.39 7.15 7.81 45.56 0.36 7.50 16 LS Contribution 263.09 15.07 3.96 3.96 Total: -1.00 -33.55 263.09 -4.27 -37.82 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -0.79 Total: 20.09 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.48 Total: -3.61 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.75 Total: -25.88 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -2.63 Total: -51.87 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.49 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.55 -4.27 -37.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004134448.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.567 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds