Wall clock time and date at job start Mon Mar 30 2020 07:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47603 * 59.99854 * 9 7 2 11 11 O 1.42905 * 109.47687 * 299.97897 * 9 7 2 12 12 C 1.42908 * 114.09513 * 178.87050 * 11 9 7 13 13 H 1.09003 * 109.46891 * 301.15631 * 12 11 9 14 14 C 1.53001 * 109.48708 * 181.13131 * 12 11 9 15 15 O 1.42896 * 109.46901 * 65.04240 * 14 12 11 16 16 C 1.53090 * 109.42191 * 61.13652 * 12 11 9 17 17 H 1.09001 * 109.52239 * 62.30646 * 16 12 11 18 18 O 1.42904 * 109.57190 * 182.45774 * 16 12 11 19 19 C 1.53177 * 109.16452 * 302.39494 * 16 12 11 20 20 H 1.09000 * 109.61909 * 297.07004 * 19 16 12 21 21 O 1.42905 * 109.54161 * 176.84857 * 19 16 12 22 22 C 1.53089 * 109.48156 * 180.02562 * 9 7 2 23 23 H 1.08998 * 109.52190 * 57.62507 * 22 9 7 24 24 O 1.42905 * 109.52378 * 297.49479 * 22 9 7 25 25 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46648 * 185.03501 * 14 12 11 27 27 H 1.08999 * 109.46884 * 305.04050 * 14 12 11 28 28 H 0.96703 * 113.99976 * 179.97438 * 15 14 12 29 29 H 0.96697 * 114.00243 * 179.71899 * 18 16 12 30 30 H 0.96696 * 113.99756 * 180.44572 * 21 19 16 31 31 H 0.96703 * 113.99237 * 60.00166 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6248 -2.5572 -0.8896 11 8 0.4294 -2.5750 1.1673 12 6 -0.3518 -3.7685 1.2541 13 1 -0.9992 -3.8433 0.3804 14 6 -1.2078 -3.7271 2.5216 15 8 -2.1557 -2.6625 2.4216 16 6 0.5785 -4.9832 1.3057 17 1 1.1983 -4.9296 2.2007 18 8 -0.1997 -6.1814 1.3349 19 6 1.4735 -4.9843 0.0625 20 1 0.8583 -5.0886 -0.8312 21 8 2.3953 -6.0737 0.1381 22 6 2.2458 -3.6629 0.0018 23 1 2.8999 -3.5820 0.8699 24 8 3.0297 -3.6225 -1.1923 25 1 -0.4850 -0.8401 -0.0004 26 1 -1.7356 -4.6741 2.6345 27 1 -0.5667 -3.5628 3.3877 28 1 -2.7339 -2.5771 3.1920 29 1 0.3269 -6.9919 1.3637 30 1 2.9989 -6.1311 -0.6152 31 1 3.5424 -2.8095 -1.2988 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004134448.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:12 Heat of formation + Delta-G solvation = -284.703066 kcal Electronic energy + Delta-G solvation = -18071.743689 eV Core-core repulsion = 14930.676449 eV Total energy + Delta-G solvation = -3141.067239 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.24787 -38.34873 -38.05913 -37.15116 -36.38885 -34.83512 -31.79528 -31.38547 -28.29216 -26.02962 -24.09455 -22.97284 -21.72600 -19.61821 -19.12069 -18.45356 -18.04482 -17.98183 -17.44405 -16.35459 -16.17343 -15.82755 -15.63126 -15.20252 -14.82154 -14.50562 -14.35423 -13.80309 -13.52068 -13.42991 -12.73958 -12.66599 -12.53922 -11.96056 -11.90552 -11.63323 -11.24023 -11.11977 -11.01402 -10.75236 -10.53051 -10.21188 -8.67966 -6.52226 1.54638 1.63194 1.79998 2.50107 2.60872 2.67512 3.03743 3.10863 3.39834 3.52718 3.68749 3.81741 3.97295 4.05565 4.14843 4.19876 4.30317 4.51479 4.61036 4.71773 4.74171 5.00684 5.75571 5.98521 6.39655 6.48919 6.55062 6.62409 6.73259 6.92164 7.42791 8.71086 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.023938 B = 0.011083 C = 0.007888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.421643 B = 2525.821171 C = 3548.948654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.018 4.018 3 Si 1.123 2.877 4 H -0.277 1.277 5 H -0.258 1.258 6 H -0.285 1.285 7 C -0.624 4.624 8 H 0.071 0.929 9 C 0.171 3.829 10 H -0.022 1.022 11 O -0.375 6.375 12 C 0.078 3.922 13 H 0.036 0.964 14 C 0.098 3.902 15 O -0.587 6.587 16 C 0.111 3.889 17 H 0.077 0.923 18 O -0.556 6.556 19 C 0.090 3.910 20 H 0.054 0.946 21 O -0.560 6.560 22 C 0.071 3.929 23 H 0.057 0.943 24 O -0.568 6.568 25 H 0.266 0.734 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.395 0.605 29 H 0.401 0.599 30 H 0.399 0.601 31 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.731 -9.637 3.562 10.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.221 4.221 3 Si 0.943 3.057 4 H -0.203 1.203 5 H -0.183 1.183 6 H -0.211 1.211 7 C -0.660 4.660 8 H 0.089 0.911 9 C 0.116 3.884 10 H -0.005 1.005 11 O -0.295 6.295 12 C 0.019 3.981 13 H 0.054 0.946 14 C 0.021 3.979 15 O -0.396 6.396 16 C 0.051 3.949 17 H 0.095 0.905 18 O -0.365 6.365 19 C 0.030 3.970 20 H 0.072 0.928 21 O -0.369 6.369 22 C 0.011 3.989 23 H 0.075 0.925 24 O -0.377 6.377 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.245 0.755 29 H 0.252 0.748 30 H 0.250 0.750 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 1.763 -8.093 3.569 9.019 hybrid contribution 0.629 -1.613 -0.257 1.750 sum 2.392 -9.705 3.311 10.530 Atomic orbital electron populations 1.70732 1.08216 1.31271 1.43997 1.27475 0.96475 1.06875 0.91267 0.82894 0.74473 0.70706 0.77599 1.20293 1.18264 1.21110 1.22153 0.94439 0.91311 1.58128 0.91069 1.20542 0.88355 0.95622 0.83920 1.00457 1.88439 1.58204 1.37113 1.45747 1.21998 0.91861 0.85222 0.98993 0.94623 1.22060 0.90268 0.90539 0.95050 1.86605 1.51178 1.54557 1.47212 1.22027 0.90988 0.86015 0.95908 0.90525 1.86375 1.37104 1.15919 1.97079 1.22453 0.90535 0.85166 0.98809 0.92850 1.86237 1.50823 1.48763 1.51041 1.22903 0.93162 0.94951 0.87881 0.92548 1.86131 1.63374 1.45639 1.42542 0.92367 0.89391 0.92483 0.75497 0.74819 0.74993 0.75390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.16 13.53 21.45 0.29 -56.87 16 2 C -0.02 -1.00 5.40 84.65 0.46 -0.55 16 3 Si 1.12 49.10 29.90 68.60 2.05 51.15 16 4 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.62 -34.29 8.20 25.60 0.21 -34.08 16 8 H 0.07 3.62 7.09 -2.91 -0.02 3.60 16 9 C 0.17 8.91 1.83 29.88 0.05 8.96 16 10 H -0.02 -1.29 8.01 -2.39 -0.02 -1.31 16 11 O -0.38 -19.60 8.69 -144.41 -1.25 -20.85 16 12 C 0.08 3.32 2.65 30.62 0.08 3.40 16 13 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 14 C 0.10 3.47 6.65 71.98 0.48 3.95 16 15 O -0.59 -22.53 13.63 -144.41 -1.97 -24.50 16 16 C 0.11 3.87 2.78 30.68 0.09 3.96 16 17 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 18 O -0.56 -16.26 12.68 -142.94 -1.81 -18.07 16 19 C 0.09 3.26 2.93 30.71 0.09 3.35 16 20 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 21 O -0.56 -16.60 12.94 -133.12 -1.72 -18.32 16 22 C 0.07 2.98 2.77 30.68 0.08 3.06 16 23 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 24 O -0.57 -21.87 12.92 -142.99 -1.85 -23.72 16 25 H 0.27 17.49 6.47 -92.71 -0.60 16.89 16 26 H 0.09 2.56 7.62 -2.39 -0.02 2.55 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.40 10.00 9.12 -74.06 -0.68 9.33 16 29 H 0.40 8.59 8.71 -74.06 -0.65 7.94 16 30 H 0.40 9.73 8.72 -74.06 -0.65 9.09 16 31 H 0.40 14.05 7.81 -74.06 -0.58 13.47 16 Total: -1.00 -73.22 263.09 -5.90 -79.12 By element: Atomic # 1 Polarization: 41.18 SS G_CDS: -1.18 Total: 40.00 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 1.54 Total: -7.94 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.29 Total: -56.87 kcal Atomic # 8 Polarization: -96.85 SS G_CDS: -8.61 Total: -105.46 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 2.05 Total: 51.15 kcal Total: -73.22 -5.90 -79.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004134448.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.585 kcal (2) G-P(sol) polarization free energy of solvation -73.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -278.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -284.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds