Wall clock time and date at job start Mon Mar 30 2020 07:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99715 * 2 1 4 4 H 1.48498 * 109.47186 * 270.00017 * 3 2 1 5 5 H 1.48501 * 109.47296 * 30.00382 * 3 2 1 6 6 H 1.48508 * 109.47092 * 150.00336 * 3 2 1 7 7 C 1.37873 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00259 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99999 * 0.02562 * 7 2 1 10 10 O 1.42893 * 109.48256 * 60.01842 * 9 7 2 11 11 O 1.42905 * 109.47552 * 299.99822 * 9 7 2 12 12 C 1.42905 * 114.09395 * 178.84661 * 11 9 7 13 13 H 1.08996 * 109.49231 * 301.16646 * 12 11 9 14 14 C 1.53005 * 109.47857 * 181.13947 * 12 11 9 15 15 O 1.42903 * 109.46823 * 65.06098 * 14 12 11 16 16 C 1.53095 * 109.41591 * 61.16138 * 12 11 9 17 17 H 1.08997 * 109.52194 * 62.29292 * 16 12 11 18 18 O 1.42900 * 109.52445 * 182.48569 * 16 12 11 19 19 C 1.53181 * 109.15689 * 302.38949 * 16 12 11 20 20 H 1.08996 * 109.54390 * 297.02038 * 19 16 12 21 21 O 1.42903 * 109.53603 * 176.84809 * 19 16 12 22 22 C 1.53086 * 109.49284 * 180.02562 * 9 7 2 23 23 H 1.09005 * 109.52479 * 57.68394 * 22 9 7 24 24 O 1.42903 * 109.52030 * 297.50422 * 22 9 7 25 25 H 0.97005 * 120.00211 * 359.97438 * 1 2 3 26 26 H 0.96703 * 114.00489 * 299.98453 * 10 9 7 27 27 H 1.09002 * 109.47082 * 185.06119 * 14 12 11 28 28 H 1.08995 * 109.47239 * 305.06044 * 14 12 11 29 29 H 0.96701 * 113.99782 * 179.97438 * 15 14 12 30 30 H 0.96705 * 113.99435 * 299.68442 * 18 16 12 31 31 H 0.96700 * 114.00311 * 60.00134 * 21 19 16 32 32 H 0.96706 * 114.00122 * 180.31939 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.4302 -2.5746 -1.1689 11 8 0.4290 -2.5758 1.1647 12 6 -0.3526 -3.7691 1.2502 13 1 -0.9998 -3.8433 0.3764 14 6 -1.2090 -3.7283 2.5175 15 8 -2.1567 -2.6635 2.4178 16 6 0.5774 -4.9841 1.3015 17 1 1.1968 -4.9312 2.1968 18 8 -0.2021 -6.1814 1.3286 19 6 1.4730 -4.9844 0.0587 20 1 0.8571 -5.0888 -0.8345 21 8 2.3945 -6.0740 0.1340 22 6 2.2455 -3.6631 -0.0015 23 1 2.8990 -3.5837 0.8673 24 8 3.0295 -3.6216 -1.1955 25 1 -0.4851 0.8401 0.0004 26 1 -0.2255 -1.8669 -1.2351 27 1 -1.7369 -4.6753 2.6299 28 1 -0.5683 -3.5646 3.3839 29 1 -2.7352 -2.5784 3.1881 30 1 -0.7938 -6.2482 2.0906 31 1 1.9731 -6.9430 0.1815 32 1 3.6790 -4.3347 -1.2646 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004134449.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:31 Heat of formation + Delta-G solvation = -288.080981 kcal Electronic energy + Delta-G solvation = -20571.458727 eV Core-core repulsion = 17111.562818 eV Total energy + Delta-G solvation = -3459.895909 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.102 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64486 -36.89572 -36.67301 -35.70137 -34.83938 -33.72253 -32.11569 -30.06345 -29.37923 -26.63528 -24.55634 -22.18195 -21.13802 -19.59122 -17.99333 -17.37878 -16.96014 -16.74824 -16.53261 -15.87198 -14.83879 -14.74490 -14.42488 -14.17365 -13.79491 -13.42222 -13.21580 -13.02548 -12.51456 -12.07348 -11.84191 -11.50138 -11.26567 -10.94897 -10.76043 -10.41561 -10.38670 -10.05520 -9.75838 -9.59398 -9.45332 -9.29929 -8.80394 -8.63478 -8.47230 -6.16021 -4.29885 3.28113 3.34104 3.38107 4.07998 4.25763 4.35741 4.55456 4.70974 4.97272 5.21360 5.28489 5.38663 5.42915 5.49680 5.66281 5.70414 5.82763 5.98915 6.22783 6.37571 6.46456 7.17500 7.56687 7.79817 7.81775 7.98768 8.01655 8.22847 8.44527 8.81813 9.36428 9.51845 10.89946 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.022318 B = 0.010650 C = 0.007822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.317326 B = 2628.421083 C = 3578.990377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.081 3.919 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.074 0.926 9 C 0.403 3.597 10 O -0.590 6.590 11 O -0.346 6.346 12 C 0.054 3.946 13 H 0.070 0.930 14 C 0.087 3.913 15 O -0.546 6.546 16 C 0.051 3.949 17 H 0.066 0.934 18 O -0.566 6.566 19 C 0.081 3.919 20 H 0.076 0.924 21 O -0.569 6.569 22 C 0.124 3.876 23 H 0.064 0.936 24 O -0.531 6.531 25 H 0.268 0.732 26 H 0.387 0.613 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.368 0.632 30 H 0.375 0.625 31 H 0.379 0.621 32 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.874 -9.111 5.379 10.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.126 4.126 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.564 4.564 8 H 0.092 0.908 9 C 0.328 3.672 10 O -0.402 6.402 11 O -0.267 6.267 12 C -0.005 4.005 13 H 0.088 0.912 14 C 0.009 3.991 15 O -0.349 6.349 16 C -0.008 4.008 17 H 0.084 0.916 18 O -0.373 6.373 19 C 0.022 3.978 20 H 0.094 0.906 21 O -0.375 6.375 22 C 0.063 3.937 23 H 0.082 0.918 24 O -0.333 6.333 25 H 0.078 0.922 26 H 0.239 0.761 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.213 0.787 30 H 0.223 0.777 31 H 0.227 0.773 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.982 -8.375 4.120 9.385 hybrid contribution -0.669 0.095 1.344 1.505 sum -1.651 -8.279 5.464 10.056 Atomic orbital electron populations 1.69747 1.05896 1.27508 1.46876 1.25109 0.95019 0.99707 0.92734 0.86385 0.79791 0.82235 0.78303 1.20285 1.20995 1.19630 1.21151 0.93352 0.88646 1.53279 0.90773 1.19746 0.82104 0.90673 0.74679 1.86223 1.53056 1.55837 1.45044 1.88656 1.57388 1.35108 1.45579 1.22439 0.92997 0.87380 0.97714 0.91209 1.22089 0.90433 0.89041 0.97508 1.86758 1.50079 1.53366 1.44716 1.23303 0.92913 0.84765 0.99853 0.91589 1.86414 1.58817 1.41039 1.51025 1.22864 0.90343 0.88725 0.95880 0.90567 1.86366 1.36608 1.17416 1.97079 1.22340 0.92618 0.90503 0.88200 0.91788 1.86714 1.52637 1.52990 1.40960 0.92193 0.76083 0.93918 0.93407 0.78696 0.77673 0.77339 0.79130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.47 11.20 55.43 0.62 -23.85 16 2 C 0.08 2.25 5.32 -17.82 -0.09 2.16 16 3 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -15.03 8.19 -34.44 -0.28 -15.31 16 8 H 0.07 2.11 7.74 -52.49 -0.41 1.70 16 9 C 0.40 10.64 0.68 -27.84 -0.02 10.62 16 10 O -0.59 -16.19 11.60 -64.01 -0.74 -16.93 16 11 O -0.35 -8.84 9.35 -62.37 -0.58 -9.42 16 12 C 0.05 1.11 2.48 -26.68 -0.07 1.05 16 13 H 0.07 1.59 7.56 -51.93 -0.39 1.19 16 14 C 0.09 1.43 6.57 37.16 0.24 1.67 16 15 O -0.55 -9.89 13.63 -40.00 -0.55 -10.43 16 16 C 0.05 0.91 2.82 -26.59 -0.07 0.83 16 17 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 18 O -0.57 -8.25 12.91 -41.49 -0.54 -8.79 16 19 C 0.08 1.60 2.77 -26.55 -0.07 1.53 16 20 H 0.08 1.65 7.82 -51.93 -0.41 1.24 16 21 O -0.57 -9.63 12.94 -51.73 -0.67 -10.30 16 22 C 0.12 2.84 2.50 -26.60 -0.07 2.78 16 23 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 24 O -0.53 -12.05 12.87 -54.96 -0.71 -12.76 16 25 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.39 10.96 7.19 45.56 0.33 11.28 16 27 H 0.04 0.51 6.62 -51.93 -0.34 0.17 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.37 4.37 9.12 45.56 0.42 4.79 16 30 H 0.38 3.84 7.38 45.56 0.34 4.18 16 31 H 0.38 5.06 8.72 45.56 0.40 5.46 16 32 H 0.36 6.50 8.72 45.56 0.40 6.89 16 LS Contribution 270.29 15.07 4.07 4.07 Total: -1.00 -34.45 270.29 -4.62 -39.07 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.08 Total: 27.60 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -0.43 Total: 5.32 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.62 Total: -23.85 kcal Atomic # 8 Polarization: -64.84 SS G_CDS: -3.78 Total: -68.62 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -34.45 -4.62 -39.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004134449.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -249.007 kcal (2) G-P(sol) polarization free energy of solvation -34.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -283.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -288.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds