Wall clock time and date at job start Mon Mar 30 2020 07:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42901 * 109.57482 * 328.42579 * 3 2 1 5 5 C 1.53119 * 109.52506 * 88.59094 * 3 2 1 6 6 C 1.53037 * 109.27925 * 62.24769 * 5 3 2 7 7 H 1.09005 * 109.45073 * 299.17211 * 6 5 3 8 8 C 1.52997 * 109.46239 * 179.19762 * 6 5 3 9 9 N 1.46842 * 109.52055 * 59.17890 * 6 5 3 10 10 C 1.46850 * 111.20491 * 298.25883 * 9 6 5 11 11 C 1.53032 * 109.52238 * 61.73947 * 10 9 6 12 12 C 1.52997 * 109.50503 * 180.88357 * 11 10 9 13 13 C 1.52999 * 109.50101 * 60.80508 * 11 10 9 14 14 C 1.50694 * 109.47170 * 60.07790 * 13 11 10 15 15 H 1.08003 * 120.00088 * 359.97438 * 14 13 11 16 16 C 1.37880 * 119.99980 * 179.97438 * 14 13 11 17 17 N 1.31511 * 120.00196 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99776 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47314 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46893 * 120.00750 * 18 16 14 21 21 H 1.48499 * 109.47237 * 240.00222 * 18 16 14 22 22 H 4.38652 * 5.43507 * 179.97438 * 4 1 2 23 23 H 0.96708 * 113.99781 * 59.84946 * 4 3 2 24 24 H 1.09000 * 109.49919 * 302.30589 * 5 3 2 25 25 H 1.08993 * 109.53765 * 182.21248 * 5 3 2 26 26 H 1.08995 * 109.46738 * 299.94588 * 8 6 5 27 27 H 1.09002 * 109.46777 * 59.94853 * 8 6 5 28 28 H 1.09001 * 109.47140 * 179.97438 * 8 6 5 29 29 H 1.00909 * 111.00055 * 174.15756 * 9 6 5 30 30 H 1.09006 * 109.45846 * 301.73061 * 10 9 6 31 31 H 1.08996 * 109.45521 * 181.75436 * 10 9 6 32 32 H 1.09002 * 109.47153 * 60.00088 * 12 11 10 33 33 H 1.09001 * 109.46832 * 300.00279 * 12 11 10 34 34 H 1.09004 * 109.47261 * 180.02562 * 12 11 10 35 35 H 1.09002 * 109.47047 * 180.02562 * 13 11 10 36 36 H 1.09005 * 109.47400 * 300.07820 * 13 11 10 37 37 H 0.97000 * 119.99801 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1253 -1.1462 0.7050 5 6 3.1578 -0.0346 -1.4427 6 6 2.6921 1.2259 -2.1750 7 1 1.6025 1.2569 -2.1875 8 6 3.2181 1.2046 -3.6115 9 7 3.2073 2.4141 -1.4828 10 6 2.6915 2.4946 -0.1102 11 6 3.1570 1.2720 0.6836 12 6 2.6012 1.3452 2.1072 13 6 4.6860 1.2469 0.7330 14 6 5.1875 2.4997 1.4037 15 1 4.4859 3.2400 1.7590 16 6 6.5421 2.7009 1.5640 17 7 7.3965 1.7997 1.1310 18 14 7.1638 4.2542 2.3949 19 1 6.0093 5.1017 2.7872 20 1 7.9439 3.8900 3.6049 21 1 8.0325 5.0053 1.4535 22 1 -1.0498 -0.0002 0.0003 23 1 2.8393 -1.9888 0.3260 24 1 2.7622 -0.9159 -1.9476 25 1 4.2470 -0.0738 -1.4422 26 1 4.3075 1.1741 -3.5990 27 1 2.8356 0.3227 -4.1254 28 1 2.8861 2.1022 -4.1334 29 1 2.9940 3.2544 -1.9992 30 1 1.6019 2.5197 -0.1327 31 1 3.0659 3.4009 0.3657 32 1 1.5119 1.3616 2.0715 33 1 2.9625 2.2521 2.5921 34 1 2.9335 0.4743 2.6723 35 1 5.0171 0.3756 1.2981 36 1 5.0815 1.1947 -0.2815 37 1 8.3495 1.9415 1.2435 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004340200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:41 Heat of formation + Delta-G solvation = 0.702941 kcal Electronic energy + Delta-G solvation = -18107.781301 eV Core-core repulsion = 15465.327915 eV Total energy + Delta-G solvation = -2642.453387 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.80155 -35.84457 -34.23857 -32.62141 -31.91316 -30.41598 -28.31817 -26.91921 -24.26926 -23.39245 -22.98101 -20.48896 -19.06500 -17.40688 -16.20312 -15.99015 -15.51203 -14.66392 -14.55284 -14.41552 -13.96649 -13.04214 -12.74226 -12.68898 -12.33721 -11.87000 -11.65770 -11.31454 -11.20658 -11.06688 -10.80060 -10.76478 -10.65052 -10.51999 -10.30273 -10.15071 -10.03677 -9.68491 -9.39153 -9.02665 -8.64504 -8.13879 -7.72803 -5.80850 -3.78684 2.97044 3.05019 3.40612 3.48114 3.50651 4.46981 4.60769 4.66769 4.74928 5.15310 5.25529 5.46027 5.55621 5.67011 5.77653 5.86325 5.97400 6.00219 6.08182 6.16047 6.23557 6.38319 6.46262 6.46821 6.64459 6.69825 6.93840 7.14819 7.28884 7.65388 7.80259 7.90138 7.97535 8.04987 8.17088 8.25133 8.63261 9.25824 9.81048 11.30960 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.026318 B = 0.008967 C = 0.008109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.638262 B = 3121.779075 C = 3452.032975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.179 4.179 3 C 0.242 3.758 4 O -0.532 6.532 5 C -0.131 4.131 6 C 0.090 3.910 7 H 0.028 0.972 8 C -0.144 4.144 9 N -0.667 5.667 10 C 0.082 3.918 11 C -0.032 4.032 12 C -0.127 4.127 13 C 0.047 3.953 14 C -0.498 4.498 15 H 0.053 0.947 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.883 3.117 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.287 1.287 22 H 0.212 0.788 23 H 0.365 0.635 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.334 0.666 30 H 0.008 0.992 31 H 0.090 0.910 32 H 0.028 0.972 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.020 0.980 36 H 0.035 0.965 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.749 -2.829 -6.270 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.180 4.180 3 C 0.202 3.798 4 O -0.336 6.336 5 C -0.169 4.169 6 C -0.020 4.020 7 H 0.046 0.954 8 C -0.202 4.202 9 N -0.298 5.298 10 C -0.047 4.047 11 C -0.032 4.032 12 C -0.185 4.185 13 C 0.010 3.990 14 C -0.536 4.536 15 H 0.071 0.929 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.712 3.288 19 H -0.200 1.200 20 H -0.214 1.214 21 H -0.213 1.213 22 H 0.229 0.771 23 H 0.210 0.790 24 H 0.076 0.924 25 H 0.118 0.882 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.026 0.974 31 H 0.108 0.892 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.053 0.947 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.690 -2.699 -5.718 12.420 hybrid contribution -1.082 0.679 -0.056 1.279 sum -11.772 -2.020 -5.774 13.266 Atomic orbital electron populations 1.24835 0.95780 1.01010 1.02489 1.24355 0.95427 0.99641 0.98552 1.18485 0.80466 0.88818 0.92075 1.86798 1.75446 1.14968 1.56343 1.22312 1.04002 0.96775 0.93777 1.21331 0.95594 0.91572 0.93531 0.95435 1.21807 1.02700 1.00845 0.94815 1.60167 1.63103 1.03787 1.02755 1.21934 0.94112 1.00054 0.88574 1.20634 1.01265 0.88114 0.93196 1.21718 0.97386 1.02833 0.96538 1.19043 0.85012 0.96760 0.98165 1.21212 0.91205 1.04453 1.36762 0.92932 1.24930 0.97187 0.96093 0.96159 1.69979 1.01683 1.34341 1.47534 0.86686 0.78820 0.84100 0.79206 1.20032 1.21401 1.21322 0.77102 0.78950 0.92394 0.88198 0.91256 0.92767 0.93038 0.84794 0.97396 0.89193 0.95345 0.91663 0.92424 0.96166 0.94674 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.19 19.25 29.55 0.57 -2.62 16 2 C -0.18 -2.98 8.48 -37.12 -0.31 -3.30 16 3 C 0.24 4.45 0.48 -93.28 -0.04 4.40 16 4 O -0.53 -9.84 11.64 -35.23 -0.41 -10.25 16 5 C -0.13 -2.21 4.13 -26.65 -0.11 -2.32 16 6 C 0.09 1.42 2.83 -67.73 -0.19 1.23 16 7 H 0.03 0.43 7.31 -51.93 -0.38 0.05 16 8 C -0.14 -1.92 9.43 37.16 0.35 -1.57 16 9 N -0.67 -11.94 5.79 -106.76 -0.62 -12.56 16 10 C 0.08 1.58 4.82 -3.83 -0.02 1.57 16 11 C -0.03 -0.66 0.13 -154.43 -0.02 -0.68 16 12 C -0.13 -2.62 7.82 37.16 0.29 -2.33 16 13 C 0.05 1.21 3.43 -27.89 -0.10 1.12 16 14 C -0.50 -13.80 7.64 -34.44 -0.26 -14.06 16 15 H 0.05 1.42 5.69 -52.48 -0.30 1.12 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 18 Si 0.88 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H 0.21 2.15 7.80 -54.10 -0.42 1.72 16 23 H 0.36 4.95 9.03 45.56 0.41 5.37 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.10 1.95 6.59 -51.93 -0.34 1.60 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.33 5.20 8.79 -39.29 -0.35 4.86 16 30 H 0.01 0.14 7.31 -51.93 -0.38 -0.23 16 31 H 0.09 1.86 6.60 -51.93 -0.34 1.51 16 32 H 0.03 0.52 7.16 -51.93 -0.37 0.15 16 33 H 0.06 1.39 6.62 -51.93 -0.34 1.04 16 34 H 0.06 1.24 7.76 -51.93 -0.40 0.83 16 35 H 0.02 0.58 7.63 -51.93 -0.40 0.19 16 36 H 0.04 0.97 6.01 -51.93 -0.31 0.66 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 290.67 15.07 4.38 4.38 Total: -1.00 -31.81 290.67 -5.63 -37.44 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.75 Total: 7.55 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 0.05 Total: -17.05 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.12 Total: -39.03 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.41 Total: -10.25 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.81 -5.63 -37.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004340200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.140 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds