Wall clock time and date at job start Mon Mar 30 2020 07:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46930 * 2 1 4 4 C 1.34820 * 125.96050 * 94.99942 * 3 2 1 5 5 C 1.50702 * 125.77291 * 359.97438 * 4 3 2 6 6 N 1.36601 * 108.45122 * 179.97438 * 4 3 2 7 7 H 0.97004 * 125.90642 * 179.97438 * 6 4 3 8 8 N 1.40118 * 108.18179 * 359.97438 * 6 4 3 9 9 C 1.46500 * 126.16534 * 179.97438 * 8 6 4 10 10 C 1.50706 * 109.46949 * 270.02668 * 9 8 6 11 11 H 1.07995 * 120.00167 * 359.72205 * 10 9 8 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99350 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 89.99430 * 14 12 10 16 16 H 1.48494 * 109.47031 * 209.99977 * 14 12 10 17 17 H 1.48504 * 109.46680 * 329.99678 * 14 12 10 18 18 C 1.34876 * 107.66871 * 0.26487 * 8 6 4 19 19 O 1.21771 * 126.18956 * 179.71980 * 18 8 6 20 20 H 1.08997 * 109.47376 * 300.00590 * 1 2 3 21 21 H 1.09001 * 109.46766 * 60.00556 * 1 2 3 22 22 H 1.08998 * 109.46765 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47376 * 239.99410 * 2 1 3 24 24 H 1.09001 * 109.46766 * 119.99444 * 2 1 3 25 25 H 1.09005 * 109.47069 * 180.02562 * 5 4 3 26 26 H 1.08996 * 109.47198 * 299.99852 * 5 4 3 27 27 H 1.09003 * 109.46898 * 60.00517 * 5 4 3 28 28 H 1.09000 * 109.47175 * 150.02694 * 9 8 6 29 29 H 1.09001 * 109.47297 * 30.02201 * 9 8 6 30 30 H 0.97005 * 119.99656 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3859 2.1356 1.0871 5 6 2.3455 1.6488 2.5128 6 7 2.7868 3.3755 0.6776 7 1 3.0937 4.0932 1.2536 8 7 2.6781 3.4314 -0.7182 9 6 3.0061 4.5806 -1.5656 10 6 1.7840 5.4465 -1.7327 11 1 0.8547 5.1662 -1.2592 12 6 1.8511 6.5938 -2.4945 13 7 0.7845 7.3491 -2.6408 14 14 3.4564 7.0745 -3.3199 15 1 3.5173 6.4689 -4.6745 16 1 3.5304 8.5531 -3.4349 17 1 4.5976 6.5835 -2.5064 18 6 2.2110 2.2387 -1.1405 19 8 1.9858 1.9224 -2.2947 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.6873 2.4423 3.1774 26 1 1.3240 1.3720 2.7734 27 1 2.9957 0.7804 2.6187 28 1 3.3385 4.2288 -2.5422 29 1 3.8016 5.1612 -1.0984 30 1 0.8315 8.1561 -3.1771 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006574014.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:09 Heat of formation + Delta-G solvation = 26.024467 kcal Electronic energy + Delta-G solvation = -13905.909547 eV Core-core repulsion = 11510.203511 eV Total energy + Delta-G solvation = -2395.706036 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.87565 -36.22373 -34.64993 -32.97598 -31.68710 -29.62274 -28.57747 -26.41295 -23.29533 -22.01414 -19.94888 -19.21360 -17.14028 -17.02401 -15.13784 -15.07901 -14.38978 -14.12332 -13.54685 -13.42788 -13.16145 -12.87823 -12.54138 -12.28057 -12.01409 -11.86756 -11.51559 -11.14213 -10.95445 -10.73229 -10.56739 -10.29388 -9.68804 -8.82492 -8.74136 -8.19093 -7.02725 -6.22939 -4.25333 2.16321 2.51507 3.18791 3.24114 3.27124 4.07634 4.25022 4.51549 4.89553 5.07380 5.17985 5.42928 5.48508 5.67651 5.81877 5.88931 5.97433 6.19141 6.38444 6.44684 6.46947 6.57010 6.69884 6.81643 7.03318 7.35239 7.97648 8.20037 8.34808 8.81049 9.20970 9.35597 10.89849 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.043029 B = 0.008767 C = 0.008305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.572798 B = 3192.892897 C = 3370.506042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.023 4.023 3 C -0.322 4.322 4 C 0.164 3.836 5 C -0.092 4.092 6 N -0.487 5.487 7 H 0.435 0.565 8 N -0.391 5.391 9 C 0.234 3.766 10 C -0.544 4.544 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.888 5.888 14 Si 0.876 3.124 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.266 1.266 18 C 0.532 3.468 19 O -0.564 6.564 20 H 0.048 0.952 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.003 -9.627 11.315 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.062 4.062 3 C -0.336 4.336 4 C 0.045 3.955 5 C -0.150 4.150 6 N -0.205 5.205 7 H 0.279 0.721 8 N -0.213 5.213 9 C 0.115 3.885 10 C -0.582 4.582 11 H 0.097 0.903 12 C -0.127 4.127 13 N -0.526 5.526 14 Si 0.702 3.298 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.191 1.191 18 C 0.329 3.671 19 O -0.444 6.444 20 H 0.067 0.933 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.903 -9.317 10.411 14.807 hybrid contribution 0.814 1.068 -0.199 1.358 sum 5.717 -8.249 10.212 14.319 Atomic orbital electron populations 1.21736 0.96061 1.00384 1.02061 1.19510 0.94865 0.90627 1.01192 1.20193 1.20918 0.99866 0.92651 1.20561 0.94787 0.84197 0.95987 1.20523 1.03971 1.01684 0.88806 1.43871 1.65241 1.13624 0.97808 0.72069 1.48834 1.63166 1.16188 0.93068 1.19936 0.97453 0.82080 0.89010 1.21314 0.96820 1.06718 1.33343 0.90280 1.24839 0.96647 0.95777 0.95439 1.69885 1.28544 1.14781 1.39351 0.86863 0.83725 0.78223 0.80993 1.19468 1.20645 1.19083 1.16705 0.79897 0.80991 0.89556 1.90778 1.56882 1.76042 1.20697 0.93319 0.92416 0.93378 0.91681 0.92293 0.91233 0.89453 0.89528 0.92670 0.94607 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.89 37.16 0.37 -1.72 16 2 C -0.02 -0.35 6.22 -27.88 -0.17 -0.53 16 3 C -0.32 -5.91 5.38 -104.60 -0.56 -6.47 16 4 C 0.16 2.45 7.20 -81.68 -0.59 1.86 16 5 C -0.09 -0.82 9.79 36.01 0.35 -0.47 16 6 N -0.49 -8.29 7.29 33.67 0.25 -8.04 16 7 H 0.43 5.91 8.96 -182.58 -1.64 4.28 16 8 N -0.39 -8.88 3.60 -64.42 -0.23 -9.11 16 9 C 0.23 5.80 5.19 -5.19 -0.03 5.77 16 10 C -0.54 -15.74 9.94 -34.44 -0.34 -16.09 16 11 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 12 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 13 N -0.89 -27.13 13.96 55.43 0.77 -26.35 16 14 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 18 C 0.53 12.71 7.91 -14.98 -0.12 12.60 16 19 O -0.56 -15.67 17.84 5.13 0.09 -15.58 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.06 0.68 7.72 -51.93 -0.40 0.28 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.43 7.53 -51.93 -0.39 1.04 16 29 H 0.04 0.81 7.20 -51.93 -0.37 0.44 16 30 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 262.69 15.07 3.96 3.96 Total: -1.00 -35.68 262.69 -6.37 -42.05 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.35 Total: -0.27 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.19 Total: -2.93 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.79 Total: -43.51 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.09 Total: -15.58 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -35.68 -6.37 -42.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006574014.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.072 kcal (2) G-P(sol) polarization free energy of solvation -35.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds