Wall clock time and date at job start Mon Mar 30 2020 07:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46930 * 2 1 4 4 C 1.34820 * 125.96050 * 94.99942 * 3 2 1 5 5 C 1.50702 * 125.77291 * 359.97438 * 4 3 2 6 6 N 1.36601 * 108.45122 * 179.97438 * 4 3 2 7 7 H 0.97004 * 125.90642 * 179.97438 * 6 4 3 8 8 N 1.40118 * 108.18179 * 359.97438 * 6 4 3 9 9 C 1.46500 * 126.16534 * 179.97438 * 8 6 4 10 10 C 1.50706 * 109.46949 * 270.02668 * 9 8 6 11 11 H 1.07995 * 120.00167 * 359.72205 * 10 9 8 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99350 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 89.99430 * 14 12 10 16 16 H 1.48494 * 109.47031 * 209.99977 * 14 12 10 17 17 H 1.48504 * 109.46680 * 329.99678 * 14 12 10 18 18 C 1.34876 * 107.66871 * 0.26487 * 8 6 4 19 19 O 1.21771 * 126.18956 * 179.71980 * 18 8 6 20 20 H 1.08997 * 109.47376 * 300.00590 * 1 2 3 21 21 H 1.09001 * 109.46766 * 60.00556 * 1 2 3 22 22 H 1.08998 * 109.46765 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47376 * 239.99410 * 2 1 3 24 24 H 1.09001 * 109.46766 * 119.99444 * 2 1 3 25 25 H 1.09005 * 109.47069 * 180.02562 * 5 4 3 26 26 H 1.08996 * 109.47198 * 299.99852 * 5 4 3 27 27 H 1.09003 * 109.46898 * 60.00517 * 5 4 3 28 28 H 1.09000 * 109.47175 * 150.02694 * 9 8 6 29 29 H 1.09001 * 109.47297 * 30.02201 * 9 8 6 30 30 H 0.97005 * 119.99656 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3859 2.1356 1.0871 5 6 2.3455 1.6488 2.5128 6 7 2.7868 3.3755 0.6776 7 1 3.0937 4.0932 1.2536 8 7 2.6781 3.4314 -0.7182 9 6 3.0061 4.5806 -1.5656 10 6 1.7840 5.4465 -1.7327 11 1 0.8547 5.1662 -1.2592 12 6 1.8511 6.5938 -2.4945 13 7 0.7845 7.3491 -2.6408 14 14 3.4564 7.0745 -3.3199 15 1 3.5173 6.4689 -4.6745 16 1 3.5304 8.5531 -3.4349 17 1 4.5976 6.5835 -2.5064 18 6 2.2110 2.2387 -1.1405 19 8 1.9858 1.9224 -2.2947 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.6873 2.4423 3.1774 26 1 1.3240 1.3720 2.7734 27 1 2.9957 0.7804 2.6187 28 1 3.3385 4.2288 -2.5422 29 1 3.8016 5.1612 -1.0984 30 1 0.8315 8.1561 -3.1771 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006574014.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:09 Heat of formation + Delta-G solvation = -1.166045 kcal Electronic energy + Delta-G solvation = -13907.088616 eV Core-core repulsion = 11510.203511 eV Total energy + Delta-G solvation = -2396.885105 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.43599 -38.00662 -36.25268 -34.87572 -33.26438 -31.10196 -30.06087 -27.98799 -24.90187 -23.58295 -21.59564 -20.66558 -19.31023 -18.60300 -16.91415 -16.70373 -16.12142 -15.83140 -14.88124 -14.84460 -14.51157 -14.29426 -14.11638 -13.83182 -13.41723 -13.13018 -13.00761 -12.77953 -12.64163 -12.12203 -12.08074 -11.86915 -11.76520 -10.96645 -10.61502 -9.77971 -8.63918 -8.46484 -6.57325 0.78922 0.99601 1.28286 1.33108 1.41210 2.21112 2.36392 2.84782 3.08703 3.82129 4.15793 4.41766 4.45992 4.51330 4.55805 4.70718 4.79179 4.91020 5.03160 5.14097 5.18356 5.20533 5.27284 5.46060 5.53533 5.57988 6.02934 6.43919 6.44967 6.79453 7.05749 7.46781 8.70350 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.043029 B = 0.008767 C = 0.008305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.572798 B = 3192.892897 C = 3370.506042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.020 4.020 3 C -0.357 4.357 4 C 0.202 3.798 5 C -0.089 4.089 6 N -0.473 5.473 7 H 0.452 0.548 8 N -0.414 5.414 9 C 0.242 3.758 10 C -0.558 4.558 11 H 0.024 0.976 12 C 0.017 3.983 13 N -0.937 5.937 14 Si 0.954 3.046 15 H -0.273 1.273 16 H -0.268 1.268 17 H -0.233 1.233 18 C 0.498 3.502 19 O -0.627 6.627 20 H 0.063 0.937 21 H 0.010 0.990 22 H 0.076 0.924 23 H 0.042 0.958 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.129 -10.252 14.192 18.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.058 4.058 3 C -0.369 4.369 4 C 0.082 3.918 5 C -0.147 4.147 6 N -0.195 5.195 7 H 0.300 0.700 8 N -0.232 5.232 9 C 0.122 3.878 10 C -0.596 4.596 11 H 0.042 0.958 12 C -0.183 4.183 13 N -0.575 5.575 14 Si 0.775 3.225 15 H -0.198 1.198 16 H -0.193 1.193 17 H -0.156 1.156 18 C 0.298 3.702 19 O -0.513 6.513 20 H 0.082 0.918 21 H 0.030 0.970 22 H 0.095 0.905 23 H 0.061 0.939 24 H 0.126 0.874 25 H 0.116 0.884 26 H 0.125 0.875 27 H 0.136 0.864 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.038 -9.941 13.354 18.075 hybrid contribution 0.054 1.260 -0.980 1.597 sum 7.092 -8.682 12.374 16.697 Atomic orbital electron populations 1.21723 0.96009 1.01735 1.00471 1.19597 0.94889 0.88894 1.02409 1.20375 1.23738 1.01464 0.91355 1.21544 0.90076 0.82007 0.98182 1.20872 1.06036 1.03592 0.84191 1.44105 1.64837 1.15270 0.95263 0.70019 1.48691 1.63208 1.15320 0.96020 1.19638 0.96159 0.82329 0.89681 1.21438 0.96506 1.08008 1.33623 0.95806 1.25909 1.01254 0.95355 0.95737 1.70039 1.31516 1.15586 1.40395 0.85644 0.78997 0.78372 0.79527 1.19805 1.19253 1.15609 1.17709 0.80005 0.82125 0.90393 1.90697 1.59823 1.77439 1.23389 0.91788 0.97040 0.90544 0.93918 0.87418 0.88378 0.87527 0.86446 0.94222 0.91358 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.89 71.98 0.71 -3.26 16 2 C -0.02 -0.56 6.22 29.85 0.19 -0.38 16 3 C -0.36 -12.82 5.38 -19.85 -0.11 -12.93 16 4 C 0.20 5.41 7.20 41.03 0.30 5.70 16 5 C -0.09 -1.06 9.79 71.24 0.70 -0.36 16 6 N -0.47 -15.18 7.29 -47.38 -0.35 -15.53 16 7 H 0.45 10.94 8.96 -213.30 -1.91 9.03 16 8 N -0.41 -19.03 3.60 -475.86 -1.71 -20.74 16 9 C 0.24 12.13 5.19 85.63 0.44 12.57 16 10 C -0.56 -33.59 9.94 25.60 0.25 -33.34 16 11 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 12 C 0.02 1.01 5.47 84.66 0.46 1.47 16 13 N -0.94 -59.07 13.96 21.45 0.30 -58.77 16 14 Si 0.95 43.19 27.47 68.60 1.88 45.07 16 15 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.23 -9.26 6.54 99.48 0.65 -8.61 16 18 C 0.50 24.74 7.91 85.02 0.67 25.41 16 19 O -0.63 -37.43 17.84 -4.57 -0.08 -37.51 16 20 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 22 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.11 2.00 7.72 -2.39 -0.02 1.99 16 25 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.04 2.10 7.53 -2.39 -0.02 2.08 16 29 H 0.07 2.95 7.20 -2.39 -0.02 2.94 16 30 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 Total: -1.00 -86.36 262.69 2.83 -83.53 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -0.83 Total: 9.06 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 3.62 Total: -5.11 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -1.76 Total: -95.04 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.08 Total: -37.51 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.88 Total: 45.07 kcal Total: -86.36 2.83 -83.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006574014.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.360 kcal (2) G-P(sol) polarization free energy of solvation -86.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds