Wall clock time and date at job start Mon Mar 30 2020 07:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.36472 * 126.56811 * 265.02173 * 10 9 7 12 12 N 1.31036 * 108.96353 * 179.97438 * 11 10 9 13 13 C 1.32466 * 109.33565 * 0.02562 * 12 11 10 14 14 C 1.36184 * 126.57131 * 84.71442 * 10 9 7 15 15 N 1.36472 * 131.47412 * 0.02562 * 14 10 9 16 16 C 1.30748 * 118.51018 * 167.61004 * 15 14 10 17 17 N 1.36980 * 122.04683 * 357.95860 * 16 15 14 18 18 C 1.47263 * 120.33583 * 28.96353 * 17 16 15 19 19 H 1.09002 * 110.47754 * 204.45088 * 18 17 16 20 20 Cl 1.80301 * 109.62177 * 82.87453 * 18 17 16 21 21 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 22 22 H 1.08996 * 109.47197 * 300.00354 * 9 7 2 23 23 H 1.09004 * 109.47476 * 59.99997 * 9 7 2 24 24 H 1.07993 * 125.52218 * 359.95118 * 11 10 9 25 25 H 1.08001 * 118.97966 * 177.97759 * 16 15 14 26 26 H 0.96999 * 119.89458 * 209.21239 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 6 3.5115 -1.1942 -0.0051 10 7 3.9997 -2.5755 -0.0124 11 6 4.3600 -3.3163 1.0757 12 7 4.7435 -4.5033 0.6746 13 6 4.6492 -4.5721 -0.6449 14 6 4.1756 -3.3681 -1.1057 15 7 3.9664 -3.1353 -2.4340 16 6 4.4477 -3.9879 -3.3005 17 7 5.1849 -5.0767 -2.9164 18 6 4.9616 -5.6995 -1.6007 19 1 5.8556 -6.2304 -1.2736 20 17 3.5649 -6.8355 -1.6978 21 1 -0.4850 0.8401 0.0040 22 1 3.8752 -0.6760 -0.8923 23 1 3.8746 -0.6849 0.8876 24 1 4.3337 -2.9787 2.1012 25 1 4.2584 -3.8288 -4.3518 26 1 5.8601 -5.4378 -3.5118 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008689865.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:29 Heat of formation + Delta-G solvation = 82.951142 kcal Electronic energy + Delta-G solvation = -14742.192173 eV Core-core repulsion = 12076.070578 eV Total energy + Delta-G solvation = -2666.121595 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 240.047 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.74413 -38.16890 -35.46838 -34.26483 -32.89508 -32.02660 -29.39763 -28.11550 -24.80198 -23.27416 -22.50085 -20.39308 -18.39936 -17.40493 -17.18445 -16.99588 -15.62838 -15.08203 -14.54650 -13.82355 -13.66962 -13.48320 -13.25189 -12.61346 -12.18019 -11.88663 -11.36282 -10.86211 -10.65881 -10.43374 -10.40878 -10.27258 -9.76877 -9.52064 -8.96635 -8.79441 -8.61521 -7.18453 -6.27714 -4.31618 1.54697 2.16957 3.08838 3.12643 3.19790 3.20786 3.34873 3.39859 3.92922 4.19770 4.42067 4.76015 4.92753 5.01367 5.51541 5.59821 5.80084 6.04951 6.20684 6.41938 6.83394 7.08662 7.25212 7.48619 7.67356 8.21724 8.41006 8.46574 8.76426 9.26534 10.84834 Molecular weight = 240.05amu Principal moments of inertia in cm(-1) A = 0.035816 B = 0.007126 C = 0.006997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.584664 B = 3928.305078 C = 4000.637457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.081 3.919 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.279 1.279 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.209 3.791 10 N -0.400 5.400 11 C 0.186 3.814 12 N -0.471 5.471 13 C -0.090 4.090 14 C 0.203 3.797 15 N -0.484 5.484 16 C 0.364 3.636 17 N -0.741 5.741 18 C 0.330 3.670 19 H 0.131 0.869 20 Cl -0.209 7.209 21 H 0.269 0.731 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.210 0.790 25 H 0.191 0.809 26 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.290 -7.533 -5.495 15.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.123 4.123 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.204 1.204 7 C -0.577 4.577 8 H 0.098 0.902 9 C 0.089 3.911 10 N -0.078 5.078 11 C -0.095 4.095 12 N -0.189 5.189 13 C -0.226 4.226 14 C -0.022 4.022 15 N -0.205 5.205 16 C 0.070 3.930 17 N -0.382 5.382 18 C 0.195 3.805 19 H 0.148 0.852 20 Cl -0.184 7.184 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.227 0.773 25 H 0.208 0.792 26 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 11.628 -7.090 -4.772 14.431 hybrid contribution 0.396 0.767 -0.426 0.963 sum 12.024 -6.323 -5.198 14.546 Atomic orbital electron populations 1.69875 1.06187 1.27418 1.48621 1.24791 0.94812 0.98805 0.93939 0.86874 0.80422 0.83726 0.78887 1.19700 1.18933 1.20449 1.21044 0.87543 0.95619 1.53513 0.90155 1.20196 0.97346 0.74672 0.98913 1.45301 1.43827 1.13989 1.04682 1.25125 1.03827 0.87023 0.93566 1.69289 1.20775 1.18716 1.10104 1.20721 1.14174 0.95333 0.92396 1.18362 1.04447 0.91409 0.87962 1.69215 1.26542 1.25866 0.98867 1.24654 0.87714 0.81828 0.98758 1.45598 1.41227 1.32308 1.19090 1.21656 0.90335 0.87179 0.81301 0.85159 1.98775 1.54154 1.67368 1.98114 0.92078 0.93172 0.93685 0.77326 0.79238 0.75321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.46 13.96 55.43 0.77 -25.69 15 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 15 3 Si 0.87 20.17 27.47 -169.99 -4.67 15.50 15 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.26 -5.84 6.53 56.52 0.37 -5.47 15 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 7 C -0.54 -15.13 9.94 -34.44 -0.34 -15.47 15 8 H 0.08 2.58 8.06 -52.49 -0.42 2.16 15 9 C 0.21 4.91 5.00 -5.20 -0.03 4.88 15 10 N -0.40 -8.88 2.76 -118.90 -0.33 -9.21 15 11 C 0.19 3.67 12.62 -88.61 -1.12 2.55 15 12 N -0.47 -9.38 11.20 -10.04 -0.11 -9.49 15 13 C -0.09 -1.73 6.68 -82.47 -0.55 -2.28 15 14 C 0.20 4.33 7.78 -154.74 -1.20 3.13 15 15 N -0.48 -9.49 10.72 -13.17 -0.14 -9.63 15 16 C 0.36 4.92 12.23 -88.37 -1.08 3.84 15 17 N -0.74 -8.34 5.44 -55.25 -0.30 -8.65 15 18 C 0.33 4.76 4.63 -4.60 -0.02 4.74 15 19 H 0.13 1.54 8.14 -51.93 -0.42 1.11 15 20 Cl -0.21 -3.33 28.93 -51.86 -1.50 -4.83 15 21 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 22 H 0.05 1.21 7.19 -51.93 -0.37 0.83 15 23 H 0.05 0.97 7.57 -51.93 -0.39 0.57 15 24 H 0.21 3.31 8.06 -52.49 -0.42 2.89 15 25 H 0.19 1.66 8.06 -52.49 -0.42 1.24 15 26 H 0.41 2.79 8.95 -40.82 -0.37 2.43 15 LS Contribution 249.90 15.07 3.77 3.77 Total: -1.00 -34.53 249.90 -8.94 -43.47 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -1.99 Total: 1.21 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -4.44 Total: 3.55 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -0.11 Total: -62.67 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal Atomic # 17 Polarization: -3.33 SS G_CDS: -1.50 Total: -4.83 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -34.53 -8.94 -43.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008689865.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.422 kcal (2) G-P(sol) polarization free energy of solvation -34.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds