Wall clock time and date at job start Mon Mar 30 2020 07:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.36472 * 126.56811 * 265.02173 * 10 9 7 12 12 N 1.31036 * 108.96353 * 179.97438 * 11 10 9 13 13 C 1.32466 * 109.33565 * 0.02562 * 12 11 10 14 14 C 1.36184 * 126.57131 * 84.71442 * 10 9 7 15 15 N 1.36472 * 131.47412 * 0.02562 * 14 10 9 16 16 C 1.30748 * 118.51018 * 167.61004 * 15 14 10 17 17 N 1.36980 * 122.04683 * 357.95860 * 16 15 14 18 18 C 1.47263 * 120.33583 * 28.96353 * 17 16 15 19 19 H 1.09002 * 110.47754 * 204.45088 * 18 17 16 20 20 Cl 1.80301 * 109.62177 * 82.87453 * 18 17 16 21 21 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 22 22 H 1.08996 * 109.47197 * 300.00354 * 9 7 2 23 23 H 1.09004 * 109.47476 * 59.99997 * 9 7 2 24 24 H 1.07993 * 125.52218 * 359.95118 * 11 10 9 25 25 H 1.08001 * 118.97966 * 177.97759 * 16 15 14 26 26 H 0.96999 * 119.89458 * 209.21239 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 6 3.5115 -1.1942 -0.0051 10 7 3.9997 -2.5755 -0.0124 11 6 4.3600 -3.3163 1.0757 12 7 4.7435 -4.5033 0.6746 13 6 4.6492 -4.5721 -0.6449 14 6 4.1756 -3.3681 -1.1057 15 7 3.9664 -3.1353 -2.4340 16 6 4.4477 -3.9879 -3.3005 17 7 5.1849 -5.0767 -2.9164 18 6 4.9616 -5.6995 -1.6007 19 1 5.8556 -6.2304 -1.2736 20 17 3.5649 -6.8355 -1.6978 21 1 -0.4850 0.8401 0.0040 22 1 3.8752 -0.6760 -0.8923 23 1 3.8746 -0.6849 0.8876 24 1 4.3337 -2.9787 2.1012 25 1 4.2584 -3.8288 -4.3518 26 1 5.8601 -5.4378 -3.5118 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008689865.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:29 Heat of formation + Delta-G solvation = 59.683057 kcal Electronic energy + Delta-G solvation = -14743.201153 eV Core-core repulsion = 12076.070578 eV Total energy + Delta-G solvation = -2667.130574 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 240.047 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.19088 -39.40385 -36.70873 -36.00686 -34.48991 -33.65677 -30.71552 -29.97536 -26.19973 -24.90776 -23.99194 -21.86631 -19.75712 -19.28175 -18.81339 -18.12892 -17.06062 -16.56573 -16.27973 -15.19549 -15.16439 -14.83807 -14.61942 -14.49677 -13.93073 -13.33029 -13.09155 -12.60190 -12.28691 -11.89357 -11.84715 -11.74425 -11.61083 -10.91636 -10.83311 -10.32205 -10.19283 -8.55180 -8.41872 -6.53345 0.26886 0.95195 1.33065 1.36044 1.46035 1.83502 1.88454 2.11314 2.25375 2.60712 2.90885 3.14548 3.51503 3.83164 4.12281 4.26921 4.40191 4.52422 4.76778 4.92530 5.19907 5.45128 5.58892 5.93696 6.29349 6.49133 6.63945 6.96087 7.09527 7.16344 8.75340 Molecular weight = 240.05amu Principal moments of inertia in cm(-1) A = 0.035816 B = 0.007126 C = 0.006997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.584664 B = 3928.305078 C = 4000.637457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.021 3.979 3 Si 0.957 3.043 4 H -0.252 1.252 5 H -0.245 1.245 6 H -0.278 1.278 7 C -0.547 4.547 8 H 0.018 0.982 9 C 0.222 3.778 10 N -0.424 5.424 11 C 0.172 3.828 12 N -0.480 5.480 13 C -0.107 4.107 14 C 0.181 3.819 15 N -0.552 5.552 16 C 0.392 3.608 17 N -0.719 5.719 18 C 0.333 3.667 19 H 0.163 0.837 20 Cl -0.223 7.223 21 H 0.274 0.726 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.237 0.763 25 H 0.241 0.759 26 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.658 -7.221 -6.521 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.179 4.179 3 Si 0.778 3.222 4 H -0.177 1.177 5 H -0.169 1.169 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.037 0.963 9 C 0.101 3.899 10 N -0.104 5.104 11 C -0.108 4.108 12 N -0.198 5.198 13 C -0.242 4.242 14 C -0.042 4.042 15 N -0.276 5.276 16 C 0.100 3.900 17 N -0.362 5.362 18 C 0.198 3.802 19 H 0.181 0.819 20 Cl -0.198 7.198 21 H 0.083 0.917 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.253 0.747 25 H 0.257 0.743 26 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 14.058 -6.864 -5.840 16.699 hybrid contribution -0.370 0.498 -0.225 0.660 sum 13.689 -6.366 -6.066 16.269 Atomic orbital electron populations 1.70047 1.08540 1.28924 1.50187 1.25859 0.95680 1.03420 0.92902 0.85597 0.79277 0.77321 0.80045 1.17650 1.16886 1.20328 1.21126 0.90173 0.93434 1.53767 0.96343 1.19879 0.93971 0.76320 0.99686 1.45312 1.45347 1.13814 1.05932 1.25782 1.03654 0.87055 0.94343 1.69305 1.21133 1.18630 1.10742 1.21312 1.14129 0.96163 0.92584 1.18928 1.04425 0.91987 0.88865 1.69255 1.30456 1.29314 0.98619 1.25617 0.84279 0.80244 0.99846 1.45546 1.41093 1.31157 1.18379 1.21876 0.90604 0.86208 0.81559 0.81939 1.98779 1.55290 1.67616 1.98143 0.91736 0.93473 0.91051 0.74682 0.74302 0.72137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.02 13.96 21.45 0.30 -57.72 15 2 C 0.02 1.19 5.47 84.66 0.46 1.66 15 3 Si 0.96 41.29 27.47 68.60 1.88 43.17 15 4 H -0.25 -10.09 7.11 99.48 0.71 -9.38 15 5 H -0.25 -9.76 6.53 99.48 0.65 -9.11 15 6 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 7 C -0.55 -31.77 9.94 25.60 0.25 -31.52 15 8 H 0.02 1.25 8.06 -2.91 -0.02 1.23 15 9 C 0.22 10.46 5.00 85.63 0.43 10.89 15 10 N -0.42 -18.99 2.76 -530.09 -1.46 -20.45 15 11 C 0.17 6.79 12.62 179.64 2.27 9.06 15 12 N -0.48 -18.94 11.20 -185.68 -2.08 -21.02 15 13 C -0.11 -3.99 6.68 42.37 0.28 -3.71 15 14 C 0.18 7.72 7.78 132.31 1.03 8.75 15 15 N -0.55 -21.25 10.72 -195.57 -2.10 -23.34 15 16 C 0.39 9.50 12.23 179.56 2.20 11.70 15 17 N -0.72 -13.78 5.44 -328.70 -1.79 -15.57 15 18 C 0.33 8.83 4.63 85.60 0.40 9.23 15 19 H 0.16 3.29 8.14 -2.39 -0.02 3.27 15 20 Cl -0.22 -6.79 28.93 -2.72 -0.08 -6.87 15 21 H 0.27 15.54 8.31 -92.70 -0.77 14.76 15 22 H 0.05 2.23 7.19 -2.39 -0.02 2.22 15 23 H 0.07 2.95 7.57 -2.39 -0.02 2.93 15 24 H 0.24 7.37 8.06 -2.91 -0.02 7.35 15 25 H 0.24 3.14 8.06 -2.91 -0.02 3.12 15 26 H 0.44 3.99 8.95 -92.71 -0.83 3.16 15 Total: -1.00 -79.68 249.90 2.33 -77.34 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.34 Total: 8.39 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 7.32 Total: 16.05 kcal Atomic # 7 Polarization: -130.97 SS G_CDS: -7.13 Total: -138.10 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.88 Total: 43.17 kcal Atomic # 17 Polarization: -6.79 SS G_CDS: -0.08 Total: -6.87 kcal Total: -79.68 2.33 -77.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008689865.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.028 kcal (2) G-P(sol) polarization free energy of solvation -79.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds