Wall clock time and date at job start Mon Mar 30 2020 07:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47393 * 2 1 4 4 C 1.53001 * 109.47249 * 120.00214 * 2 1 3 5 5 N 1.46894 * 109.47188 * 64.31532 * 4 2 1 6 6 C 1.45591 * 111.00057 * 205.92475 * 5 4 2 7 7 C 1.53096 * 110.69004 * 300.28885 * 6 5 4 8 8 C 1.51486 * 108.38531 * 275.86643 * 7 6 5 9 9 O 1.21282 * 120.04599 * 250.00585 * 8 7 6 10 10 N 1.33628 * 119.90612 * 70.03033 * 8 7 6 11 11 C 1.46501 * 119.95266 * 180.24592 * 10 8 7 12 12 C 1.50705 * 109.47161 * 269.97803 * 11 10 8 13 13 H 1.07998 * 119.99622 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99933 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99990 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99927 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47316 * 59.99772 * 16 14 12 18 18 H 1.48503 * 109.47249 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47182 * 299.99896 * 16 14 12 20 20 C 1.47256 * 120.09565 * 0.22573 * 10 8 7 21 21 C 1.45558 * 111.00567 * 75.33780 * 5 4 2 22 22 H 1.09001 * 109.47395 * 55.21330 * 1 2 3 23 23 H 1.09001 * 109.46838 * 175.21558 * 1 2 3 24 24 H 1.09002 * 109.46876 * 295.21394 * 1 2 3 25 25 H 1.09006 * 109.47137 * 239.99908 * 2 1 3 26 26 H 1.08997 * 109.47458 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47068 * 300.00566 * 3 2 1 28 28 H 1.08997 * 109.46856 * 60.00025 * 3 2 1 29 29 H 1.08994 * 109.47125 * 304.30713 * 4 2 1 30 30 H 1.09006 * 109.47212 * 184.31469 * 4 2 1 31 31 H 1.09004 * 109.23395 * 60.60366 * 6 5 4 32 32 H 1.09006 * 109.23349 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.66755 * 156.14618 * 7 6 5 34 34 H 1.09003 * 109.69457 * 35.59766 * 7 6 5 35 35 H 1.09001 * 109.47025 * 29.97661 * 11 10 8 36 36 H 1.09004 * 109.47119 * 149.97644 * 11 10 8 37 37 H 0.96999 * 119.99947 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.62439 * 169.62970 * 20 10 8 39 39 H 1.09000 * 109.62581 * 49.07067 * 20 10 8 40 40 H 1.08999 * 109.20819 * 179.81123 * 21 5 4 41 41 H 1.09003 * 109.20091 * 299.14544 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6373 -2.1330 1.1982 6 6 1.5401 -2.6966 2.5371 7 6 2.8861 -2.6067 3.2609 8 6 3.7278 -3.7988 2.8543 9 8 3.9611 -4.6790 3.6554 10 7 4.2132 -3.8790 1.6119 11 6 5.0227 -5.0341 1.2160 12 6 6.4759 -4.7484 1.4950 13 1 6.7672 -3.8010 1.9239 14 6 7.4334 -5.6961 1.2018 15 7 7.0786 -6.8496 0.6790 16 14 9.2345 -5.3423 1.5483 17 1 9.4180 -5.0838 2.9991 18 1 10.0553 -6.5126 1.1458 19 1 9.6623 -4.1488 0.7749 20 6 3.9352 -2.8083 0.6399 21 6 2.4562 -2.8753 0.2511 22 1 -0.3634 0.5863 -0.8440 23 1 -0.3633 -1.0241 -0.0857 24 1 -0.3633 0.4378 0.9298 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6150 -0.2540 2.1375 30 1 3.1273 -0.6548 1.2887 31 1 0.7897 -2.1462 3.1047 32 1 1.2398 -3.7420 2.4657 33 1 2.7248 -2.6216 4.3388 34 1 3.3945 -1.6849 2.9780 35 1 4.7089 -5.9096 1.7844 36 1 4.8878 -5.2246 0.1513 37 1 7.7522 -7.5164 0.4731 38 1 4.5534 -2.9491 -0.2467 39 1 4.1517 -1.8397 1.0904 40 1 2.1356 -3.9170 0.2391 41 1 2.3283 -2.4496 -0.7442 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012474276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:21 Heat of formation + Delta-G solvation = -36.264808 kcal Electronic energy + Delta-G solvation = -20002.831051 eV Core-core repulsion = 17110.499614 eV Total energy + Delta-G solvation = -2892.331437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14719 -37.76655 -35.21182 -34.42357 -32.51256 -31.04094 -28.76717 -27.16274 -26.76679 -25.70353 -24.00026 -22.63134 -21.16235 -19.40742 -18.15633 -16.68979 -16.43743 -16.23991 -15.54261 -15.03481 -14.77857 -14.54038 -14.12746 -13.70698 -13.20398 -12.85692 -12.80604 -12.41285 -12.32246 -12.21994 -11.92412 -11.79256 -11.44119 -11.33411 -11.15461 -11.10817 -10.93320 -10.80516 -10.77045 -10.54540 -10.46355 -10.10168 -9.68631 -8.84684 -8.44153 -8.37475 -7.48876 -6.05078 -4.10129 3.30706 3.35252 3.37270 3.46511 3.90722 3.96980 4.44115 4.73574 4.83505 4.89902 5.03273 5.22782 5.28561 5.31640 5.33140 5.36852 5.49575 5.56474 5.58077 5.63336 5.73161 5.74883 5.82147 5.90809 5.94885 6.04319 6.05931 6.15448 6.23672 6.33506 6.35990 7.02833 7.15529 7.27316 7.44044 7.52981 7.90798 8.22482 8.44420 8.89308 9.11838 9.55080 11.02880 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.028596 B = 0.005438 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.924114 B = 5147.460698 C = 5540.852389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 C -0.148 4.148 4 C 0.053 3.947 5 N -0.551 5.551 6 C 0.078 3.922 7 C -0.180 4.180 8 C 0.505 3.495 9 O -0.549 6.549 10 N -0.593 5.593 11 C 0.245 3.755 12 C -0.527 4.527 13 H 0.055 0.945 14 C 0.062 3.938 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.075 3.925 21 C 0.046 3.954 22 H 0.043 0.957 23 H 0.065 0.935 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.032 0.968 37 H 0.264 0.736 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.346 14.745 -2.465 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.075 4.075 5 N -0.274 5.274 6 C -0.050 4.050 7 C -0.223 4.223 8 C 0.291 3.709 9 O -0.428 6.428 10 N -0.325 5.325 11 C 0.126 3.874 12 C -0.566 4.566 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.203 1.203 20 C -0.051 4.051 21 C -0.083 4.083 22 H 0.062 0.938 23 H 0.084 0.916 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.581 14.031 -2.305 18.986 hybrid contribution 1.989 0.216 0.463 2.054 sum -10.592 14.247 -1.843 17.849 Atomic orbital electron populations 1.21696 0.94812 1.02240 1.00519 1.21101 0.96516 0.95157 0.98293 1.21830 1.00973 0.96179 1.01592 1.22265 0.98770 0.88110 0.98341 1.60001 1.54819 1.02388 1.10146 1.21725 0.94609 1.01107 0.87575 1.22767 0.98159 0.98326 1.03024 1.20232 0.80487 0.87731 0.82482 1.90679 1.60005 1.41361 1.50719 1.48176 1.50777 1.23058 1.10450 1.19305 0.89221 0.83227 0.95672 1.21381 0.91497 1.01715 1.41996 0.92699 1.24930 0.99254 0.94835 0.95029 1.69923 1.34113 1.06138 1.43172 0.86557 0.84382 0.77628 0.78838 1.20201 1.21106 1.20275 1.22402 0.96961 0.91212 0.94513 1.22368 0.90780 0.99482 0.95682 0.93771 0.91609 0.93402 0.91082 0.92768 0.92704 0.92859 0.91102 0.93556 0.90077 0.90502 0.88888 0.89923 0.93915 0.95046 0.92644 0.89086 0.91469 0.90090 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.02 37.15 0.33 -0.85 16 2 C -0.09 -0.83 2.96 -90.62 -0.27 -1.10 16 3 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 4 C 0.05 0.54 3.24 -3.83 -0.01 0.53 16 5 N -0.55 -6.56 3.98 -236.75 -0.94 -7.51 16 6 C 0.08 1.00 5.48 -4.48 -0.02 0.97 16 7 C -0.18 -2.75 5.49 -27.45 -0.15 -2.90 16 8 C 0.50 10.85 6.82 -11.11 -0.08 10.77 16 9 O -0.55 -14.58 16.65 5.56 0.09 -14.49 16 10 N -0.59 -12.71 2.46 -174.40 -0.43 -13.14 16 11 C 0.24 6.49 5.10 -5.19 -0.03 6.46 16 12 C -0.53 -15.19 9.38 -34.44 -0.32 -15.51 16 13 H 0.05 1.59 7.81 -52.49 -0.41 1.18 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 16 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.07 1.20 5.79 -3.59 -0.02 1.18 16 21 C 0.05 0.61 5.54 -4.51 -0.03 0.58 16 22 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.68 6.77 -51.93 -0.35 0.33 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.68 7.78 -51.93 -0.40 0.28 16 30 H 0.05 0.52 4.87 -51.93 -0.25 0.26 16 31 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 32 H 0.08 1.10 7.87 -51.93 -0.41 0.69 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.08 1.16 5.47 -51.93 -0.28 0.87 16 35 H 0.04 1.29 7.41 -51.93 -0.38 0.90 16 36 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.09 1.50 7.92 -51.93 -0.41 1.09 16 39 H 0.07 1.00 4.63 -51.93 -0.24 0.76 16 40 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 41 H 0.08 0.95 6.77 -51.93 -0.35 0.60 16 LS Contribution 317.16 15.07 4.78 4.78 Total: -1.00 -32.73 317.16 -7.96 -40.69 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.83 Total: -2.33 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -0.35 Total: 0.99 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.63 Total: -46.72 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.09 Total: -14.49 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.73 -7.96 -40.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012474276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.428 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds