Wall clock time and date at job start Mon Mar 30 2020 07:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47393 * 2 1 4 4 C 1.53001 * 109.47249 * 120.00214 * 2 1 3 5 5 N 1.46894 * 109.47188 * 64.31532 * 4 2 1 6 6 C 1.45591 * 111.00057 * 205.92475 * 5 4 2 7 7 C 1.53096 * 110.69004 * 300.28885 * 6 5 4 8 8 C 1.51486 * 108.38531 * 275.86643 * 7 6 5 9 9 O 1.21282 * 120.04599 * 250.00585 * 8 7 6 10 10 N 1.33628 * 119.90612 * 70.03033 * 8 7 6 11 11 C 1.46501 * 119.95266 * 180.24592 * 10 8 7 12 12 C 1.50705 * 109.47161 * 269.97803 * 11 10 8 13 13 H 1.07998 * 119.99622 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99933 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99990 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99927 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47316 * 59.99772 * 16 14 12 18 18 H 1.48503 * 109.47249 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47182 * 299.99896 * 16 14 12 20 20 C 1.47256 * 120.09565 * 0.22573 * 10 8 7 21 21 C 1.45558 * 111.00567 * 75.33780 * 5 4 2 22 22 H 1.09001 * 109.47395 * 55.21330 * 1 2 3 23 23 H 1.09001 * 109.46838 * 175.21558 * 1 2 3 24 24 H 1.09002 * 109.46876 * 295.21394 * 1 2 3 25 25 H 1.09006 * 109.47137 * 239.99908 * 2 1 3 26 26 H 1.08997 * 109.47458 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47068 * 300.00566 * 3 2 1 28 28 H 1.08997 * 109.46856 * 60.00025 * 3 2 1 29 29 H 1.08994 * 109.47125 * 304.30713 * 4 2 1 30 30 H 1.09006 * 109.47212 * 184.31469 * 4 2 1 31 31 H 1.09004 * 109.23395 * 60.60366 * 6 5 4 32 32 H 1.09006 * 109.23349 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.66755 * 156.14618 * 7 6 5 34 34 H 1.09003 * 109.69457 * 35.59766 * 7 6 5 35 35 H 1.09001 * 109.47025 * 29.97661 * 11 10 8 36 36 H 1.09004 * 109.47119 * 149.97644 * 11 10 8 37 37 H 0.96999 * 119.99947 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.62439 * 169.62970 * 20 10 8 39 39 H 1.09000 * 109.62581 * 49.07067 * 20 10 8 40 40 H 1.08999 * 109.20819 * 179.81123 * 21 5 4 41 41 H 1.09003 * 109.20091 * 299.14544 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6373 -2.1330 1.1982 6 6 1.5401 -2.6966 2.5371 7 6 2.8861 -2.6067 3.2609 8 6 3.7278 -3.7988 2.8543 9 8 3.9611 -4.6790 3.6554 10 7 4.2132 -3.8790 1.6119 11 6 5.0227 -5.0341 1.2160 12 6 6.4759 -4.7484 1.4950 13 1 6.7672 -3.8010 1.9239 14 6 7.4334 -5.6961 1.2018 15 7 7.0786 -6.8496 0.6790 16 14 9.2345 -5.3423 1.5483 17 1 9.4180 -5.0838 2.9991 18 1 10.0553 -6.5126 1.1458 19 1 9.6623 -4.1488 0.7749 20 6 3.9352 -2.8083 0.6399 21 6 2.4562 -2.8753 0.2511 22 1 -0.3634 0.5863 -0.8440 23 1 -0.3633 -1.0241 -0.0857 24 1 -0.3633 0.4378 0.9298 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6150 -0.2540 2.1375 30 1 3.1273 -0.6548 1.2887 31 1 0.7897 -2.1462 3.1047 32 1 1.2398 -3.7420 2.4657 33 1 2.7248 -2.6216 4.3388 34 1 3.3945 -1.6849 2.9780 35 1 4.7089 -5.9096 1.7844 36 1 4.8878 -5.2246 0.1513 37 1 7.7522 -7.5164 0.4731 38 1 4.5534 -2.9491 -0.2467 39 1 4.1517 -1.8397 1.0904 40 1 2.1356 -3.9170 0.2391 41 1 2.3283 -2.4496 -0.7442 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012474276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:20 Heat of formation + Delta-G solvation = -58.231772 kcal Electronic energy + Delta-G solvation = -20003.783610 eV Core-core repulsion = 17110.499614 eV Total energy + Delta-G solvation = -2893.283996 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.54740 -39.12365 -36.69991 -35.66864 -34.53986 -32.32373 -30.45786 -28.23947 -27.79739 -26.92673 -25.47350 -24.49583 -22.12400 -20.33162 -19.79377 -18.67963 -18.04692 -17.66653 -16.67499 -16.53233 -16.27375 -15.80720 -15.54017 -14.72859 -14.62727 -14.34477 -14.02510 -13.83146 -13.64706 -13.40208 -13.19227 -13.10328 -12.86393 -12.71539 -12.60358 -12.38385 -12.37278 -12.15573 -12.03832 -11.78187 -11.58168 -11.56283 -11.24436 -10.68175 -10.60493 -9.87202 -8.90930 -8.25804 -6.42257 1.33373 1.37920 1.45442 1.77857 2.26523 2.41686 2.92724 3.02675 3.53297 3.89162 3.98203 4.07503 4.09083 4.22360 4.29921 4.40675 4.45363 4.57236 4.59856 4.77329 4.84922 4.90033 4.95011 4.98251 5.00144 5.03959 5.13887 5.18920 5.22478 5.28129 5.42052 5.49832 5.60296 5.66855 5.77267 6.00804 6.20965 6.22277 6.64134 6.75680 7.23289 7.42774 8.80569 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.028596 B = 0.005438 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.924114 B = 5147.460698 C = 5540.852389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 C -0.145 4.145 4 C 0.052 3.948 5 N -0.545 5.545 6 C 0.084 3.916 7 C -0.162 4.162 8 C 0.490 3.510 9 O -0.613 6.613 10 N -0.597 5.597 11 C 0.260 3.740 12 C -0.547 4.547 13 H 0.050 0.950 14 C 0.009 3.991 15 N -0.927 5.927 16 Si 0.969 3.031 17 H -0.279 1.279 18 H -0.276 1.276 19 H -0.259 1.259 20 C 0.072 3.928 21 C 0.057 3.943 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.118 0.882 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.103 0.897 35 H -0.006 1.006 36 H 0.024 0.976 37 H 0.268 0.732 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.650 17.580 -2.732 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.075 4.075 5 N -0.266 5.266 6 C -0.045 4.045 7 C -0.204 4.204 8 C 0.279 3.721 9 O -0.496 6.496 10 N -0.327 5.327 11 C 0.139 3.861 12 C -0.585 4.585 13 H 0.068 0.932 14 C -0.191 4.191 15 N -0.566 5.566 16 Si 0.793 3.207 17 H -0.204 1.204 18 H -0.201 1.201 19 H -0.183 1.183 20 C -0.052 4.052 21 C -0.072 4.072 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.136 0.864 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.012 0.988 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.916 16.923 -2.611 21.448 hybrid contribution 2.035 -0.668 0.522 2.204 sum -10.881 16.256 -2.089 19.672 Atomic orbital electron populations 1.21654 0.94443 1.01668 1.01135 1.21078 0.96735 0.95632 0.97345 1.21804 1.00818 0.95429 1.02266 1.22375 0.98546 0.86785 0.99812 1.60067 1.54030 1.03187 1.09364 1.21779 0.93757 1.00829 0.88127 1.22745 0.98194 0.95459 1.03991 1.21453 0.80175 0.88839 0.81594 1.90637 1.62390 1.44123 1.52413 1.48220 1.49816 1.22836 1.11823 1.18765 0.89332 0.83856 0.94190 1.21638 0.92727 1.01776 1.42380 0.93172 1.25876 1.04236 0.94465 0.94476 1.70045 1.35845 1.07036 1.43723 0.85447 0.78386 0.78356 0.78492 1.20441 1.20067 1.18343 1.22715 0.99037 0.90189 0.93223 1.22235 0.88644 0.98936 0.97379 0.93107 0.92767 0.92871 0.91612 0.92993 0.92103 0.92188 0.89503 0.94057 0.86441 0.92498 0.87801 0.87903 0.98828 0.95766 0.92278 0.89666 0.89393 0.92230 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.02 71.98 0.65 -1.24 16 2 C -0.09 -1.32 2.96 -10.80 -0.03 -1.35 16 3 C -0.15 -1.85 9.19 71.98 0.66 -1.18 16 4 C 0.05 0.87 3.24 86.30 0.28 1.15 16 5 N -0.54 -11.58 3.98 -902.93 -3.59 -15.17 16 6 C 0.08 1.94 5.48 86.58 0.47 2.42 16 7 C -0.16 -4.65 5.49 30.13 0.17 -4.48 16 8 C 0.49 21.54 6.82 88.09 0.60 22.14 16 9 O -0.61 -34.10 16.65 -3.04 -0.05 -34.15 16 10 N -0.60 -26.26 2.46 -824.70 -2.03 -28.29 16 11 C 0.26 14.49 5.10 85.63 0.44 14.93 16 12 C -0.55 -32.38 9.38 25.60 0.24 -32.14 16 13 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 14 C 0.01 0.51 5.46 84.65 0.46 0.97 16 15 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 16 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 20 C 0.07 2.27 5.79 86.26 0.50 2.77 16 21 C 0.06 1.44 5.54 86.58 0.48 1.92 16 22 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.05 0.91 7.87 -2.39 -0.02 0.89 16 24 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 1.06 6.77 -2.38 -0.02 1.04 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 1.26 7.78 -2.39 -0.02 1.24 16 30 H 0.04 0.77 4.87 -2.38 -0.01 0.75 16 31 H 0.12 1.98 8.05 -2.38 -0.02 1.96 16 32 H 0.06 1.58 7.87 -2.38 -0.02 1.56 16 33 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.10 2.56 5.47 -2.39 -0.01 2.54 16 35 H -0.01 -0.42 7.41 -2.39 -0.02 -0.43 16 36 H 0.02 1.36 8.03 -2.39 -0.02 1.34 16 37 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.08 2.79 7.92 -2.39 -0.02 2.77 16 39 H 0.09 2.43 4.63 -2.39 -0.01 2.42 16 40 H 0.06 1.79 8.05 -2.39 -0.02 1.77 16 41 H 0.11 2.25 6.77 -2.39 -0.02 2.23 16 Total: -1.00 -74.36 317.16 2.55 -71.81 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.99 Total: 9.01 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 4.92 Total: 5.91 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -5.34 Total: -100.12 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.05 Total: -34.15 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -74.36 2.55 -71.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012474276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.580 kcal (2) G-P(sol) polarization free energy of solvation -74.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds