Wall clock time and date at job start Mon Mar 30 2020 07:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46737 * 2 1 4 4 C 1.52997 * 109.47414 * 240.00191 * 2 1 3 5 5 C 1.53000 * 109.47211 * 119.99944 * 2 1 3 6 6 H 1.09004 * 109.46704 * 315.52742 * 5 2 1 7 7 N 1.46897 * 109.47139 * 195.52821 * 5 2 1 8 8 C 1.50699 * 109.46860 * 75.52636 * 5 2 1 9 9 O 1.21293 * 119.99828 * 71.29809 * 8 5 2 10 10 N 1.34776 * 119.99878 * 251.01391 * 8 5 2 11 11 C 1.37099 * 119.99711 * 168.65624 * 10 8 5 12 12 H 1.07994 * 119.99909 * 42.58434 * 11 10 8 13 13 C 1.38951 * 120.00011 * 222.58225 * 11 10 8 14 14 N 1.31414 * 120.00074 * 12.64014 * 13 11 10 15 15 Si 1.86804 * 119.99960 * 192.64239 * 13 11 10 16 16 H 1.48497 * 109.47300 * 59.99973 * 15 13 11 17 17 H 1.48499 * 109.46992 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47004 * 299.99648 * 15 13 11 19 19 C 1.46498 * 120.00212 * 348.66042 * 10 8 5 20 20 C 1.53781 * 113.61455 * 181.26381 * 19 10 8 21 21 C 1.53955 * 87.02144 * 220.04618 * 20 19 10 22 22 C 1.53785 * 113.61284 * 83.65784 * 19 10 8 23 23 H 1.09003 * 109.47375 * 313.47835 * 1 2 3 24 24 H 1.08997 * 109.47057 * 73.48340 * 1 2 3 25 25 H 1.08999 * 109.46712 * 193.47739 * 1 2 3 26 26 H 1.08996 * 109.46953 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47314 * 299.99949 * 3 2 1 28 28 H 1.09006 * 109.47016 * 59.99921 * 3 2 1 29 29 H 1.09001 * 109.47197 * 299.99923 * 4 2 1 30 30 H 1.09003 * 109.47033 * 59.99972 * 4 2 1 31 31 H 1.08996 * 109.47076 * 179.97438 * 4 2 1 32 32 H 1.00904 * 110.99892 * 300.00282 * 7 5 2 33 33 H 1.00901 * 111.00457 * 63.95054 * 7 5 2 34 34 H 0.96994 * 119.99896 * 183.99999 * 14 13 11 35 35 H 1.08995 * 112.84860 * 312.46253 * 19 10 8 36 36 H 1.08996 * 113.61580 * 334.57205 * 20 19 10 37 37 H 1.09007 * 113.60981 * 105.46932 * 20 19 10 38 38 H 1.08995 * 113.53841 * 270.81480 * 21 20 19 39 39 H 1.08999 * 113.66390 * 139.93060 * 21 20 19 40 40 H 1.08997 * 113.61752 * 254.52636 * 22 19 10 41 41 H 1.08996 * 113.61609 * 25.35303 * 22 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 1.4697 -0.3912 2.1176 7 7 3.4613 -0.4086 1.4492 8 6 1.8727 -2.2086 1.0740 9 8 2.5813 -2.8111 0.2955 10 7 0.9394 -2.8703 1.7866 11 6 0.6248 -4.1660 1.4677 12 1 1.4088 -4.8680 1.2252 13 6 -0.7028 -4.5760 1.4566 14 7 -1.6665 -3.6838 1.5043 15 14 -1.1178 -6.3955 1.3740 16 1 -0.5378 -7.0895 2.5518 17 1 -2.5928 -6.5673 1.3756 18 1 -0.5527 -6.9761 0.1295 19 6 0.2612 -2.2050 2.9017 20 6 -0.7517 -3.1033 3.6309 21 6 -1.6674 -1.8683 3.7118 22 6 -0.9337 -1.3396 2.4679 23 1 -0.3634 0.7071 0.7457 24 1 -0.3633 0.2922 -0.9852 25 1 -0.3633 -0.9994 0.2395 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6765 1.9564 0.8900 29 1 1.6768 -1.7489 -1.2493 30 1 1.6767 -0.2073 -2.1392 31 1 3.1300 -0.7207 -1.2494 32 1 4.0117 -0.7049 0.6571 33 1 3.5929 0.5748 1.6332 34 1 -2.5914 -3.9713 1.5552 35 1 0.9514 -1.6921 3.5714 36 1 -1.1523 -3.9039 3.0091 37 1 -0.4037 -3.4544 4.6024 38 1 -1.5051 -1.2638 4.6042 39 1 -2.7197 -2.0916 3.5360 40 1 -0.7327 -0.2689 2.5018 41 1 -1.3833 -1.6562 1.5267 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014948847.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:03 Heat of formation + Delta-G solvation = 29.110569 kcal Electronic energy + Delta-G solvation = -21368.511224 eV Core-core repulsion = 18479.014676 eV Total energy + Delta-G solvation = -2889.496548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.82636 -37.86310 -36.04608 -33.15863 -32.03155 -31.79028 -27.49504 -26.82464 -25.81985 -24.31112 -24.10449 -23.40987 -19.77399 -18.66692 -17.81865 -16.78889 -16.62073 -15.20450 -14.91336 -14.57350 -14.25518 -14.00185 -13.80170 -13.63737 -12.78043 -12.69166 -12.36327 -12.11635 -11.85612 -11.83451 -11.49421 -11.28412 -11.04929 -10.91920 -10.75823 -10.66122 -10.49963 -10.43219 -10.26183 -10.20989 -9.74831 -9.52149 -9.11303 -8.47347 -8.04299 -7.84893 -7.09507 -6.25649 -4.01844 3.18239 3.23277 3.27223 3.88129 4.10399 4.79648 4.90533 5.17584 5.22982 5.26769 5.45602 5.74893 5.85968 5.88910 5.92273 5.97829 6.00041 6.07653 6.15148 6.19311 6.23791 6.26186 6.48948 6.51442 6.52182 6.58825 6.71542 6.92279 6.95234 7.01407 7.06914 7.42409 7.51834 7.56197 7.75434 7.87442 8.11710 8.28150 8.56390 9.17275 9.43253 10.04615 10.61732 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.024449 B = 0.009232 C = 0.008127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.943151 B = 3032.113798 C = 3444.667182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.142 4.142 4 C -0.139 4.139 5 C 0.082 3.918 6 H 0.088 0.912 7 N -0.834 5.834 8 C 0.492 3.508 9 O -0.574 6.574 10 N -0.444 5.444 11 C -0.281 4.281 12 H 0.087 0.913 13 C 0.024 3.976 14 N -0.857 5.857 15 Si 0.918 3.082 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.122 3.878 20 C -0.175 4.175 21 C -0.134 4.134 22 C -0.133 4.133 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.345 0.655 33 H 0.334 0.666 34 H 0.269 0.731 35 H 0.060 0.940 36 H 0.179 0.821 37 H 0.015 0.985 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.026 0.974 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.282 7.685 0.414 7.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.091 4.091 3 C -0.200 4.200 4 C -0.196 4.196 5 C -0.033 4.033 6 H 0.106 0.894 7 N -0.365 5.365 8 C 0.279 3.721 9 O -0.456 6.456 10 N -0.164 5.164 11 C -0.410 4.410 12 H 0.105 0.895 13 C -0.174 4.174 14 N -0.499 5.499 15 Si 0.744 3.256 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.197 1.197 19 C 0.017 3.983 20 C -0.212 4.212 21 C -0.172 4.172 22 C -0.171 4.171 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.194 0.806 37 H 0.034 0.966 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.406 6.837 0.607 6.876 hybrid contribution -0.386 0.167 -0.533 0.679 sum 0.020 7.004 0.074 7.004 Atomic orbital electron populations 1.22205 0.93784 1.04288 1.00620 1.21072 0.96951 0.94554 0.96554 1.21936 1.00397 0.96025 1.01613 1.21967 1.00425 1.02137 0.95112 1.21613 0.89488 0.95086 0.97155 0.89364 1.58775 1.07400 1.22544 1.47761 1.20001 0.83186 0.87423 0.81448 1.90481 1.46059 1.69402 1.39696 1.43478 1.35157 1.11861 1.25863 1.19416 0.91892 0.85783 1.43878 0.89492 1.25253 0.95776 0.99519 0.96849 1.70038 1.00023 1.32646 1.47199 0.86132 0.77297 0.82855 0.79318 1.19824 1.20748 1.19706 1.22310 0.91338 0.95908 0.88698 1.25122 0.95630 1.01845 0.98589 1.22451 0.98997 0.98987 0.96743 1.23755 0.97387 0.94626 1.01361 0.93047 0.93630 0.89402 0.93078 0.92600 0.92776 0.90158 0.94195 0.93323 0.84042 0.85230 0.91992 0.92184 0.80555 0.96601 0.93726 0.92589 0.95498 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 7.26 37.16 0.27 -2.36 16 2 C -0.09 -1.50 0.66 -154.51 -0.10 -1.60 16 3 C -0.14 -1.89 7.64 37.16 0.28 -1.61 16 4 C -0.14 -2.53 7.21 37.16 0.27 -2.26 16 5 C 0.08 1.56 2.31 -68.87 -0.16 1.40 16 6 H 0.09 1.69 5.28 -51.93 -0.27 1.42 16 7 N -0.83 -14.26 8.72 -5.65 -0.05 -14.31 16 8 C 0.49 11.80 5.27 -10.99 -0.06 11.74 16 9 O -0.57 -15.35 14.14 5.55 0.08 -15.27 16 10 N -0.44 -11.01 2.69 -106.87 -0.29 -11.29 16 11 C -0.28 -7.48 8.56 -14.93 -0.13 -7.60 16 12 H 0.09 2.46 7.73 -52.49 -0.41 2.05 16 13 C 0.02 0.58 3.33 -17.47 -0.06 0.52 16 14 N -0.86 -20.55 7.12 54.51 0.39 -20.16 16 15 Si 0.92 19.74 29.55 -169.99 -5.02 14.72 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 C 0.12 2.71 3.03 -67.12 -0.20 2.51 16 20 C -0.17 -3.88 6.63 -25.83 -0.17 -4.05 16 21 C -0.13 -2.62 7.71 -25.82 -0.20 -2.82 16 22 C -0.13 -2.71 4.66 -25.91 -0.12 -2.84 16 23 H 0.05 0.81 7.05 -51.93 -0.37 0.45 16 24 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 25 H 0.09 1.83 4.73 -51.93 -0.25 1.58 16 26 H 0.05 0.62 6.72 -51.93 -0.35 0.27 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.78 5.95 -51.93 -0.31 1.47 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.85 7.15 -51.93 -0.37 0.48 16 32 H 0.35 6.02 7.57 -39.29 -0.30 5.72 16 33 H 0.33 4.65 7.23 -39.29 -0.28 4.36 16 34 H 0.27 6.18 8.31 -40.82 -0.34 5.84 16 35 H 0.06 1.30 7.54 -51.93 -0.39 0.91 16 36 H 0.18 4.24 2.66 -100.01 -0.27 3.97 16 37 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.03 0.49 6.53 -51.93 -0.34 0.15 16 41 H 0.13 2.97 4.52 -51.93 -0.23 2.74 16 LS Contribution 293.72 15.07 4.43 4.43 Total: -1.00 -26.96 293.72 -7.07 -34.03 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -6.23 Total: 16.83 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -0.38 Total: -8.98 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.05 Total: -45.76 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.08 Total: -15.27 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.96 -7.07 -34.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014948847.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.144 kcal (2) G-P(sol) polarization free energy of solvation -26.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds