Wall clock time and date at job start Mon Mar 30 2020 07:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46737 * 2 1 4 4 C 1.52997 * 109.47414 * 240.00191 * 2 1 3 5 5 C 1.53000 * 109.47211 * 119.99944 * 2 1 3 6 6 H 1.09004 * 109.46704 * 315.52742 * 5 2 1 7 7 N 1.46897 * 109.47139 * 195.52821 * 5 2 1 8 8 C 1.50699 * 109.46860 * 75.52636 * 5 2 1 9 9 O 1.21293 * 119.99828 * 71.29809 * 8 5 2 10 10 N 1.34776 * 119.99878 * 251.01391 * 8 5 2 11 11 C 1.37099 * 119.99711 * 168.65624 * 10 8 5 12 12 H 1.07994 * 119.99909 * 42.58434 * 11 10 8 13 13 C 1.38951 * 120.00011 * 222.58225 * 11 10 8 14 14 N 1.31414 * 120.00074 * 12.64014 * 13 11 10 15 15 Si 1.86804 * 119.99960 * 192.64239 * 13 11 10 16 16 H 1.48497 * 109.47300 * 59.99973 * 15 13 11 17 17 H 1.48499 * 109.46992 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47004 * 299.99648 * 15 13 11 19 19 C 1.46498 * 120.00212 * 348.66042 * 10 8 5 20 20 C 1.53781 * 113.61455 * 181.26381 * 19 10 8 21 21 C 1.53955 * 87.02144 * 220.04618 * 20 19 10 22 22 C 1.53785 * 113.61284 * 83.65784 * 19 10 8 23 23 H 1.09003 * 109.47375 * 313.47835 * 1 2 3 24 24 H 1.08997 * 109.47057 * 73.48340 * 1 2 3 25 25 H 1.08999 * 109.46712 * 193.47739 * 1 2 3 26 26 H 1.08996 * 109.46953 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47314 * 299.99949 * 3 2 1 28 28 H 1.09006 * 109.47016 * 59.99921 * 3 2 1 29 29 H 1.09001 * 109.47197 * 299.99923 * 4 2 1 30 30 H 1.09003 * 109.47033 * 59.99972 * 4 2 1 31 31 H 1.08996 * 109.47076 * 179.97438 * 4 2 1 32 32 H 1.00904 * 110.99892 * 300.00282 * 7 5 2 33 33 H 1.00901 * 111.00457 * 63.95054 * 7 5 2 34 34 H 0.96994 * 119.99896 * 183.99999 * 14 13 11 35 35 H 1.08995 * 112.84860 * 312.46253 * 19 10 8 36 36 H 1.08996 * 113.61580 * 334.57205 * 20 19 10 37 37 H 1.09007 * 113.60981 * 105.46932 * 20 19 10 38 38 H 1.08995 * 113.53841 * 270.81480 * 21 20 19 39 39 H 1.08999 * 113.66390 * 139.93060 * 21 20 19 40 40 H 1.08997 * 113.61752 * 254.52636 * 22 19 10 41 41 H 1.08996 * 113.61609 * 25.35303 * 22 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 1.4697 -0.3912 2.1176 7 7 3.4613 -0.4086 1.4492 8 6 1.8727 -2.2086 1.0740 9 8 2.5813 -2.8111 0.2955 10 7 0.9394 -2.8703 1.7866 11 6 0.6248 -4.1660 1.4677 12 1 1.4088 -4.8680 1.2252 13 6 -0.7028 -4.5760 1.4566 14 7 -1.6665 -3.6838 1.5043 15 14 -1.1178 -6.3955 1.3740 16 1 -0.5378 -7.0895 2.5518 17 1 -2.5928 -6.5673 1.3756 18 1 -0.5527 -6.9761 0.1295 19 6 0.2612 -2.2050 2.9017 20 6 -0.7517 -3.1033 3.6309 21 6 -1.6674 -1.8683 3.7118 22 6 -0.9337 -1.3396 2.4679 23 1 -0.3634 0.7071 0.7457 24 1 -0.3633 0.2922 -0.9852 25 1 -0.3633 -0.9994 0.2395 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6765 1.9564 0.8900 29 1 1.6768 -1.7489 -1.2493 30 1 1.6767 -0.2073 -2.1392 31 1 3.1300 -0.7207 -1.2494 32 1 4.0117 -0.7049 0.6571 33 1 3.5929 0.5748 1.6332 34 1 -2.5914 -3.9713 1.5552 35 1 0.9514 -1.6921 3.5714 36 1 -1.1523 -3.9039 3.0091 37 1 -0.4037 -3.4544 4.6024 38 1 -1.5051 -1.2638 4.6042 39 1 -2.7197 -2.0916 3.5360 40 1 -0.7327 -0.2689 2.5018 41 1 -1.3833 -1.6562 1.5267 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014948847.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:02 Heat of formation + Delta-G solvation = 11.843213 kcal Electronic energy + Delta-G solvation = -21369.259992 eV Core-core repulsion = 18479.014676 eV Total energy + Delta-G solvation = -2890.245317 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.51399 -39.49077 -37.71432 -34.99289 -33.89144 -33.23410 -28.90051 -28.20402 -27.42439 -25.96735 -25.78015 -25.11819 -21.40532 -20.37575 -19.33953 -18.67679 -18.27767 -16.80447 -16.62866 -16.16864 -15.96376 -15.68347 -15.28679 -14.98383 -14.37041 -14.29391 -14.01776 -13.83466 -13.47360 -13.23970 -13.02873 -12.65802 -12.61919 -12.58560 -12.49184 -12.24384 -12.12626 -12.06570 -11.74745 -11.63188 -11.43371 -11.17270 -10.75853 -10.18780 -9.74848 -9.49281 -8.97051 -8.14531 -5.98335 1.41923 1.44617 1.52180 2.11127 2.31004 3.01021 3.11630 3.80450 3.85080 3.88370 4.03222 4.18524 4.30163 4.35454 4.40680 4.52022 4.54003 4.65104 4.77051 4.83410 4.88813 4.91308 5.01276 5.08647 5.09954 5.19052 5.28329 5.31405 5.36267 5.51142 5.54181 5.58099 5.81100 6.02990 6.12779 6.27799 6.38271 6.62219 6.70906 7.26162 7.58805 8.18002 8.69837 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.024449 B = 0.009232 C = 0.008127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.943151 B = 3032.113798 C = 3444.667182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.135 4.135 4 C -0.133 4.133 5 C 0.094 3.906 6 H 0.092 0.908 7 N -0.836 5.836 8 C 0.477 3.523 9 O -0.616 6.616 10 N -0.452 5.452 11 C -0.325 4.325 12 H 0.053 0.947 13 C 0.008 3.992 14 N -0.851 5.851 15 Si 0.969 3.031 16 H -0.271 1.271 17 H -0.265 1.265 18 H -0.283 1.283 19 C 0.113 3.887 20 C -0.188 4.188 21 C -0.119 4.119 22 C -0.120 4.120 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.343 0.657 33 H 0.356 0.644 34 H 0.275 0.725 35 H 0.067 0.933 36 H 0.162 0.838 37 H 0.016 0.984 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.639 9.941 1.088 10.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.192 4.192 4 C -0.190 4.190 5 C -0.021 4.021 6 H 0.110 0.890 7 N -0.370 5.370 8 C 0.266 3.734 9 O -0.501 6.501 10 N -0.172 5.172 11 C -0.454 4.454 12 H 0.071 0.929 13 C -0.191 4.191 14 N -0.491 5.491 15 Si 0.793 3.207 16 H -0.197 1.197 17 H -0.189 1.189 18 H -0.209 1.209 19 C 0.010 3.990 20 C -0.225 4.225 21 C -0.156 4.156 22 C -0.158 4.158 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.158 0.842 33 H 0.172 0.828 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.178 0.822 37 H 0.034 0.966 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.542 9.136 1.310 9.245 hybrid contribution -0.102 -0.580 -0.760 0.962 sum -0.644 8.555 0.550 8.597 Atomic orbital electron populations 1.22136 0.94054 1.02474 1.01814 1.21086 0.96698 0.96576 0.94459 1.21879 1.01183 0.92942 1.03235 1.21865 1.00428 0.99670 0.97048 1.21412 0.90757 0.91494 0.98395 0.89023 1.58682 1.06187 1.24346 1.47765 1.20883 0.82334 0.89563 0.80632 1.90439 1.47521 1.70844 1.41322 1.43657 1.35469 1.11516 1.26534 1.19224 0.92023 0.86796 1.47351 0.92933 1.25704 0.95070 1.02591 0.95694 1.70121 1.00153 1.33541 1.45290 0.85391 0.77761 0.78976 0.78576 1.19671 1.18887 1.20902 1.22513 0.91814 0.96405 0.88313 1.25059 0.96702 1.02526 0.98242 1.22409 0.98436 0.97478 0.97322 1.23534 0.96072 0.95577 1.00650 0.91136 0.92561 0.93197 0.91888 0.91067 0.91118 0.95021 0.92107 0.93219 0.84246 0.82764 0.91438 0.91508 0.82243 0.96560 0.91126 0.92350 0.93114 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.85 7.26 71.98 0.52 -4.33 16 2 C -0.09 -2.74 0.66 -52.18 -0.03 -2.78 16 3 C -0.14 -3.06 7.64 71.98 0.55 -2.51 16 4 C -0.13 -4.80 7.21 71.98 0.52 -4.28 16 5 C 0.09 3.51 2.31 44.17 0.10 3.61 16 6 H 0.09 3.34 5.28 -2.39 -0.01 3.32 16 7 N -0.84 -27.38 8.72 -171.80 -1.50 -28.88 16 8 C 0.48 23.53 5.27 87.66 0.46 23.99 16 9 O -0.62 -34.66 14.14 -3.07 -0.04 -34.71 16 10 N -0.45 -23.10 2.69 -610.41 -1.64 -24.75 16 11 C -0.33 -18.11 8.56 84.04 0.72 -17.39 16 12 H 0.05 3.20 7.73 -2.91 -0.02 3.18 16 13 C 0.01 0.40 3.33 84.93 0.28 0.68 16 14 N -0.85 -40.82 7.12 18.56 0.13 -40.69 16 15 Si 0.97 41.07 29.55 68.60 2.03 43.10 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 19 C 0.11 4.99 3.03 45.52 0.14 5.13 16 20 C -0.19 -8.22 6.63 31.18 0.21 -8.01 16 21 C -0.12 -4.36 7.71 31.18 0.24 -4.12 16 22 C -0.12 -4.70 4.66 31.12 0.15 -4.55 16 23 H 0.07 2.01 7.05 -2.39 -0.02 1.99 16 24 H 0.06 1.69 8.07 -2.39 -0.02 1.68 16 25 H 0.05 2.06 4.73 -2.39 -0.01 2.05 16 26 H 0.06 1.29 6.72 -2.39 -0.02 1.27 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.03 1.44 5.95 -2.39 -0.01 1.43 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.74 7.15 -2.39 -0.02 1.72 16 32 H 0.34 11.71 7.57 -89.69 -0.68 11.03 16 33 H 0.36 8.85 7.23 -89.69 -0.65 8.20 16 34 H 0.27 12.40 8.31 -92.71 -0.77 11.63 16 35 H 0.07 2.82 7.54 -2.39 -0.02 2.80 16 36 H 0.16 7.65 2.66 -89.12 -0.24 7.41 16 37 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 1.72 6.53 -2.39 -0.02 1.70 16 41 H 0.11 4.86 4.52 -2.39 -0.01 4.85 16 Total: -1.00 -61.07 293.72 2.32 -58.75 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.51 Total: 41.73 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 3.85 Total: -14.55 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -3.01 Total: -94.32 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.04 Total: -34.71 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -61.07 2.32 -58.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014948847.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.594 kcal (2) G-P(sol) polarization free energy of solvation -61.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds