Wall clock time and date at job start Mon Mar 30 2020 07:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.46505 * 2 1 4 4 C 1.50695 * 109.47172 * 120.00246 * 2 1 3 5 5 H 1.07994 * 120.00308 * 120.00086 * 4 2 1 6 6 C 1.37876 * 119.99940 * 300.00106 * 4 2 1 7 7 N 1.31517 * 120.00198 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99998 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46942 * 60.00240 * 8 6 4 10 10 H 1.48502 * 109.46905 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46889 * 299.99826 * 8 6 4 12 12 C 1.53002 * 109.47168 * 240.00323 * 2 1 3 13 13 N 1.46502 * 109.46946 * 64.99936 * 12 2 1 14 14 C 1.47192 * 119.78710 * 90.00088 * 13 12 2 15 15 C 1.52987 * 108.66391 * 251.97754 * 14 13 12 16 16 C 1.51785 * 110.88170 * 273.53169 * 15 14 13 17 17 H 1.09002 * 108.61730 * 305.88430 * 16 15 14 18 18 C 1.53002 * 108.61699 * 187.98231 * 16 15 14 19 19 C 1.51796 * 113.70293 * 66.93584 * 16 15 14 20 20 C 1.52763 * 110.88212 * 293.11935 * 19 16 15 21 21 C 1.33371 * 119.78482 * 270.02160 * 13 12 2 22 22 O 1.21281 * 119.89426 * 359.69166 * 21 13 12 23 23 H 1.08997 * 109.46924 * 299.99577 * 1 2 3 24 24 H 1.09001 * 109.46901 * 59.99669 * 1 2 3 25 25 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00429 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47048 * 304.99902 * 12 2 1 28 28 H 1.08999 * 109.47017 * 184.99634 * 12 2 1 29 29 H 1.09003 * 109.60443 * 132.22388 * 14 13 12 30 30 H 1.09001 * 109.60571 * 11.73294 * 14 13 12 31 31 H 1.09000 * 109.19700 * 153.17136 * 15 14 13 32 32 H 1.08999 * 109.19399 * 33.89161 * 15 14 13 33 33 H 1.09002 * 109.47158 * 57.93274 * 18 16 15 34 34 H 1.08991 * 109.47648 * 177.93668 * 18 16 15 35 35 H 1.09002 * 109.46742 * 297.93986 * 18 16 15 36 36 H 1.08997 * 109.22148 * 53.58250 * 19 16 15 37 37 H 1.08994 * 109.22228 * 172.93621 * 19 16 15 38 38 H 1.09000 * 109.64127 * 325.33100 * 20 19 16 39 39 H 1.09002 * 109.68144 * 204.69848 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8270 -0.4201 5.2204 11 1 1.8258 -2.5203 4.0076 12 6 2.0401 -0.7212 -1.2493 13 7 1.6525 0.0355 -2.4424 14 6 2.5506 1.0737 -2.9736 15 6 1.9398 2.4456 -2.6815 16 6 0.9711 2.8509 -3.7776 17 1 1.4860 2.7918 -4.7365 18 6 0.5459 4.3016 -3.5417 19 6 -0.2743 1.9854 -3.8420 20 6 0.0743 0.5608 -4.2694 21 6 0.4880 -0.2205 -3.0399 22 8 -0.2422 -1.0816 -2.5971 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7087 1.1611 3.4844 27 1 1.6055 -1.7197 -1.2952 28 1 3.1264 -0.7993 -1.2057 29 1 2.6623 0.9447 -4.0501 30 1 3.5247 0.9967 -2.4906 31 1 2.7369 3.1862 -2.6159 32 1 1.4088 2.4064 -1.7304 33 1 1.4283 4.9415 -3.5295 34 1 -0.1221 4.6192 -4.3422 35 1 0.0288 4.3777 -2.5852 36 1 -0.7455 1.9610 -2.8595 37 1 -0.9711 2.4125 -4.5631 38 1 0.8978 0.5835 -4.9831 39 1 -0.7970 0.0909 -4.7259 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015937264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:24 Heat of formation + Delta-G solvation = -59.572822 kcal Electronic energy + Delta-G solvation = -18411.541230 eV Core-core repulsion = 15739.162611 eV Total energy + Delta-G solvation = -2672.378619 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.03677 -36.81242 -35.37742 -33.48110 -31.26809 -30.73713 -28.57319 -25.54146 -24.99306 -23.70776 -23.41892 -20.06214 -19.75621 -18.22397 -16.70161 -16.29076 -15.69269 -14.95608 -14.42896 -14.19474 -14.00775 -13.36798 -13.28581 -12.85097 -12.61322 -12.43241 -12.11790 -11.84914 -11.66346 -11.51379 -11.03472 -10.94150 -10.79463 -10.70429 -10.56213 -10.42043 -10.32338 -10.03541 -9.69614 -9.56404 -9.08536 -8.69116 -8.29209 -7.83481 -5.92629 -4.00059 3.27459 3.34870 3.39341 3.42072 3.68708 4.48491 4.70842 4.81772 4.87272 4.98339 5.37449 5.40653 5.41868 5.57450 5.59566 5.69690 5.71815 5.79770 5.93067 5.97097 6.13921 6.17818 6.23885 6.27822 6.35128 6.55453 6.64693 6.83766 7.02744 7.22312 7.42762 7.57411 7.79754 8.01987 8.17242 8.24657 8.51363 8.86706 9.03912 9.64081 11.12580 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.031201 B = 0.007057 C = 0.006548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.189694 B = 3966.946257 C = 4275.163144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.036 3.964 3 H 0.024 0.976 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.891 3.109 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.118 3.882 13 N -0.600 5.600 14 C 0.114 3.886 15 C -0.140 4.140 16 C -0.089 4.089 17 H 0.065 0.935 18 C -0.149 4.149 19 C -0.108 4.108 20 C -0.138 4.138 21 C 0.510 3.490 22 O -0.546 6.546 23 H 0.071 0.929 24 H 0.005 0.995 25 H 0.026 0.974 26 H 0.259 0.741 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.057 5.600 -13.926 15.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.017 3.983 3 H 0.042 0.958 4 C -0.553 4.553 5 H 0.072 0.928 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.003 4.003 13 N -0.332 5.332 14 C -0.009 4.009 15 C -0.178 4.178 16 C -0.108 4.108 17 H 0.083 0.917 18 C -0.206 4.206 19 C -0.146 4.146 20 C -0.178 4.178 21 C 0.297 3.703 22 O -0.424 6.424 23 H 0.090 0.910 24 H 0.024 0.976 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.602 5.258 -13.543 14.616 hybrid contribution 0.364 -0.316 0.931 1.048 sum 1.966 4.942 -12.612 13.688 Atomic orbital electron populations 1.21679 0.97999 0.99209 0.99033 1.18965 0.93461 0.95587 0.90280 0.95796 1.21065 1.31271 1.12361 0.90641 0.92811 1.24930 0.95047 0.94983 0.98866 1.69903 1.36594 1.22972 1.23232 0.86683 0.79060 0.79905 0.82472 1.20350 1.21357 1.20280 1.21951 0.98326 0.95817 0.84242 1.47974 1.18867 1.37248 1.29111 1.21701 0.93755 0.87094 0.98371 1.21926 0.99083 0.96602 1.00189 1.20760 0.95834 0.95197 0.98971 0.91699 1.21895 1.01157 0.95690 1.01863 1.21229 0.97708 0.93034 1.02652 1.21939 1.02764 0.96621 0.96475 1.20269 0.81301 0.83542 0.85226 1.90710 1.51667 1.33880 1.66161 0.91013 0.97632 0.95445 0.93098 0.91144 0.92185 0.91587 0.89825 0.91085 0.89927 0.92738 0.92975 0.92405 0.91131 0.91300 0.90015 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.23 7.71 37.16 0.29 -2.94 16 2 C 0.04 0.93 2.51 -91.77 -0.23 0.70 16 3 H 0.02 0.65 7.63 -51.93 -0.40 0.25 16 4 C -0.51 -14.39 8.56 -34.44 -0.29 -14.68 16 5 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.99 11.32 55.43 0.63 -25.36 16 8 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 C 0.12 2.54 4.93 -4.04 -0.02 2.52 16 13 N -0.60 -10.83 2.35 -173.23 -0.41 -11.23 16 14 C 0.11 1.56 5.91 -3.67 -0.02 1.54 16 15 C -0.14 -1.86 4.98 -27.35 -0.14 -1.99 16 16 C -0.09 -1.00 2.22 -91.85 -0.20 -1.21 16 17 H 0.06 0.62 7.88 -51.93 -0.41 0.21 16 18 C -0.15 -1.55 9.03 37.16 0.34 -1.21 16 19 C -0.11 -1.37 4.88 -27.46 -0.13 -1.50 16 20 C -0.14 -1.86 5.57 -27.65 -0.15 -2.02 16 21 C 0.51 9.51 5.36 -11.25 -0.06 9.45 16 22 O -0.55 -12.65 14.78 5.56 0.08 -12.57 16 23 H 0.07 2.07 6.07 -51.93 -0.32 1.76 16 24 H 0.00 0.12 6.06 -51.93 -0.31 -0.20 16 25 H 0.03 0.75 7.98 -51.93 -0.41 0.34 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.07 1.65 7.38 -51.93 -0.38 1.27 16 28 H 0.06 1.19 7.85 -51.93 -0.41 0.78 16 29 H 0.07 0.73 6.71 -51.93 -0.35 0.38 16 30 H 0.08 1.09 7.77 -51.93 -0.40 0.69 16 31 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 32 H 0.08 1.42 7.54 -51.93 -0.39 1.03 16 33 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.05 0.47 8.13 -51.93 -0.42 0.05 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.10 7.86 -51.93 -0.41 0.69 16 37 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 38 H 0.08 0.90 6.77 -51.93 -0.35 0.55 16 39 H 0.09 1.17 8.13 -51.93 -0.42 0.75 16 LS Contribution 298.51 15.07 4.50 4.50 Total: -1.00 -31.64 298.51 -7.56 -39.20 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.61 Total: -1.51 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -0.73 Total: -9.67 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.22 Total: -36.59 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.64 -7.56 -39.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015937264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.370 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds