Wall clock time and date at job start Mon Mar 30 2020 07:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.46505 * 2 1 4 4 C 1.50695 * 109.47172 * 120.00246 * 2 1 3 5 5 H 1.07994 * 120.00308 * 120.00086 * 4 2 1 6 6 C 1.37876 * 119.99940 * 300.00106 * 4 2 1 7 7 N 1.31517 * 120.00198 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99998 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46942 * 60.00240 * 8 6 4 10 10 H 1.48502 * 109.46905 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46889 * 299.99826 * 8 6 4 12 12 C 1.53002 * 109.47168 * 240.00323 * 2 1 3 13 13 N 1.46502 * 109.46946 * 64.99936 * 12 2 1 14 14 C 1.47192 * 119.78710 * 90.00088 * 13 12 2 15 15 C 1.52987 * 108.66391 * 251.97754 * 14 13 12 16 16 C 1.51785 * 110.88170 * 273.53169 * 15 14 13 17 17 H 1.09002 * 108.61730 * 305.88430 * 16 15 14 18 18 C 1.53002 * 108.61699 * 187.98231 * 16 15 14 19 19 C 1.51796 * 113.70293 * 66.93584 * 16 15 14 20 20 C 1.52763 * 110.88212 * 293.11935 * 19 16 15 21 21 C 1.33371 * 119.78482 * 270.02160 * 13 12 2 22 22 O 1.21281 * 119.89426 * 359.69166 * 21 13 12 23 23 H 1.08997 * 109.46924 * 299.99577 * 1 2 3 24 24 H 1.09001 * 109.46901 * 59.99669 * 1 2 3 25 25 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00429 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47048 * 304.99902 * 12 2 1 28 28 H 1.08999 * 109.47017 * 184.99634 * 12 2 1 29 29 H 1.09003 * 109.60443 * 132.22388 * 14 13 12 30 30 H 1.09001 * 109.60571 * 11.73294 * 14 13 12 31 31 H 1.09000 * 109.19700 * 153.17136 * 15 14 13 32 32 H 1.08999 * 109.19399 * 33.89161 * 15 14 13 33 33 H 1.09002 * 109.47158 * 57.93274 * 18 16 15 34 34 H 1.08991 * 109.47648 * 177.93668 * 18 16 15 35 35 H 1.09002 * 109.46742 * 297.93986 * 18 16 15 36 36 H 1.08997 * 109.22148 * 53.58250 * 19 16 15 37 37 H 1.08994 * 109.22228 * 172.93621 * 19 16 15 38 38 H 1.09000 * 109.64127 * 325.33100 * 20 19 16 39 39 H 1.09002 * 109.68144 * 204.69848 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8270 -0.4201 5.2204 11 1 1.8258 -2.5203 4.0076 12 6 2.0401 -0.7212 -1.2493 13 7 1.6525 0.0355 -2.4424 14 6 2.5506 1.0737 -2.9736 15 6 1.9398 2.4456 -2.6815 16 6 0.9711 2.8509 -3.7776 17 1 1.4860 2.7918 -4.7365 18 6 0.5459 4.3016 -3.5417 19 6 -0.2743 1.9854 -3.8420 20 6 0.0743 0.5608 -4.2694 21 6 0.4880 -0.2205 -3.0399 22 8 -0.2422 -1.0816 -2.5971 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7087 1.1611 3.4844 27 1 1.6055 -1.7197 -1.2952 28 1 3.1264 -0.7993 -1.2057 29 1 2.6623 0.9447 -4.0501 30 1 3.5247 0.9967 -2.4906 31 1 2.7369 3.1862 -2.6159 32 1 1.4088 2.4064 -1.7304 33 1 1.4283 4.9415 -3.5295 34 1 -0.1221 4.6192 -4.3422 35 1 0.0288 4.3777 -2.5852 36 1 -0.7455 1.9610 -2.8595 37 1 -0.9711 2.4125 -4.5631 38 1 0.8978 0.5835 -4.9831 39 1 -0.7970 0.0909 -4.7259 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015937264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:24 Heat of formation + Delta-G solvation = -78.560144 kcal Electronic energy + Delta-G solvation = -18412.364582 eV Core-core repulsion = 15739.162611 eV Total energy + Delta-G solvation = -2673.201971 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.42369 -38.03586 -37.10985 -35.25529 -32.79624 -32.28147 -29.84100 -27.47023 -26.87889 -24.94800 -24.59930 -21.72904 -21.02300 -19.67590 -18.43503 -17.91389 -17.22663 -16.73451 -16.07835 -15.26463 -15.13767 -14.87067 -14.68381 -14.40213 -14.33146 -13.79717 -13.42161 -13.19098 -13.08232 -12.86615 -12.79244 -12.64807 -12.50145 -12.29509 -12.19848 -11.82003 -11.66998 -11.44294 -11.38072 -11.24873 -10.95558 -10.52775 -10.41661 -9.43420 -8.10030 -6.25908 1.39769 1.42712 1.49685 1.83686 2.27290 2.45245 3.16781 3.60548 3.82000 3.92049 3.95530 4.31742 4.38955 4.47938 4.55036 4.57931 4.66813 4.76492 4.80777 4.83674 4.91727 4.96501 5.00870 5.07141 5.14233 5.24371 5.25025 5.32157 5.36221 5.40761 5.56204 5.59390 5.68345 5.91518 6.03917 6.33514 6.69885 6.85190 7.41265 7.42790 8.94136 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.031201 B = 0.007057 C = 0.006548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.189694 B = 3966.946257 C = 4275.163144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.041 3.959 3 H 0.005 0.995 4 C -0.537 4.537 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.958 3.042 9 H -0.264 1.264 10 H -0.284 1.284 11 H -0.275 1.275 12 C 0.129 3.871 13 N -0.601 5.601 14 C 0.108 3.892 15 C -0.136 4.136 16 C -0.086 4.086 17 H 0.103 0.897 18 C -0.147 4.147 19 C -0.105 4.105 20 C -0.125 4.125 21 C 0.496 3.504 22 O -0.603 6.603 23 H 0.044 0.956 24 H 0.011 0.989 25 H 0.004 0.996 26 H 0.260 0.740 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.031 0.969 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.027 0.973 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.621 6.340 -15.983 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.021 3.979 3 H 0.023 0.977 4 C -0.576 4.576 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.189 1.189 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.007 3.993 13 N -0.331 5.331 14 C -0.014 4.014 15 C -0.175 4.175 16 C -0.104 4.104 17 H 0.121 0.879 18 C -0.204 4.204 19 C -0.143 4.143 20 C -0.165 4.165 21 C 0.286 3.714 22 O -0.486 6.486 23 H 0.063 0.937 24 H 0.030 0.970 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.117 0.883 38 H 0.139 0.861 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.198 6.028 -15.627 17.052 hybrid contribution -0.145 -0.508 1.568 1.654 sum 3.052 5.520 -14.059 15.410 Atomic orbital electron populations 1.21433 0.99216 0.97164 0.97902 1.18858 0.92232 0.94786 0.91991 0.97689 1.21470 1.31561 1.12686 0.91872 0.92509 1.25781 0.95151 0.95679 1.02082 1.70045 1.37484 1.24274 1.23920 0.85622 0.79127 0.78507 0.78469 1.18866 1.20960 1.20068 1.21524 0.98983 0.94522 0.84303 1.48065 1.19642 1.37661 1.27754 1.22078 0.92950 0.85632 1.00717 1.21893 0.99774 0.97194 0.98603 1.20775 0.94881 0.95060 0.99711 0.87929 1.21882 1.01869 0.95503 1.01188 1.21252 0.98919 0.93036 1.01126 1.21957 1.04355 0.95876 0.94289 1.21352 0.80585 0.83051 0.86450 1.90679 1.53273 1.36514 1.68102 0.93698 0.96987 0.97670 0.93087 0.93545 0.90211 0.87333 0.89222 0.88990 0.94979 0.91490 0.91100 0.94986 0.95357 0.88318 0.86061 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.59 7.71 71.99 0.55 -5.03 16 2 C 0.04 2.15 2.51 -11.54 -0.03 2.13 16 3 H 0.01 0.28 7.63 -2.39 -0.02 0.27 16 4 C -0.54 -30.73 8.56 25.60 0.22 -30.51 16 5 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -55.24 11.32 21.45 0.24 -55.00 16 8 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 9 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.13 5.68 4.93 86.38 0.43 6.10 16 13 N -0.60 -21.38 2.35 -821.13 -1.93 -23.31 16 14 C 0.11 2.65 5.91 86.24 0.51 3.16 16 15 C -0.14 -3.38 4.98 30.19 0.15 -3.23 16 16 C -0.09 -1.66 2.22 -11.59 -0.03 -1.68 16 17 H 0.10 1.32 7.88 -2.39 -0.02 1.30 16 18 C -0.15 -2.68 9.03 71.98 0.65 -2.03 16 19 C -0.11 -2.43 4.88 30.12 0.15 -2.28 16 20 C -0.13 -3.05 5.57 30.00 0.17 -2.88 16 21 C 0.50 18.42 5.36 88.11 0.47 18.89 16 22 O -0.60 -28.92 14.78 -3.03 -0.04 -28.97 16 23 H 0.04 2.73 6.07 -2.39 -0.01 2.71 16 24 H 0.01 0.61 6.06 -2.39 -0.01 0.59 16 25 H 0.00 0.25 7.98 -2.39 -0.02 0.23 16 26 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 27 H 0.05 2.25 7.38 -2.39 -0.02 2.23 16 28 H 0.08 3.14 7.85 -2.39 -0.02 3.12 16 29 H 0.11 1.81 6.71 -2.39 -0.02 1.79 16 30 H 0.09 2.11 7.77 -2.39 -0.02 2.09 16 31 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 32 H 0.03 1.12 7.54 -2.39 -0.02 1.11 16 33 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 34 H 0.07 1.03 8.13 -2.39 -0.02 1.02 16 35 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.03 0.88 7.86 -2.39 -0.02 0.87 16 37 H 0.10 1.72 8.09 -2.39 -0.02 1.70 16 38 H 0.12 2.02 6.77 -2.39 -0.02 2.01 16 39 H 0.09 2.25 8.13 -2.39 -0.02 2.23 16 Total: -1.00 -72.91 298.51 4.99 -67.92 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.00 Total: 8.76 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 3.69 Total: -16.25 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -1.69 Total: -78.31 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.04 Total: -28.97 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -72.91 4.99 -67.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015937264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.637 kcal (2) G-P(sol) polarization free energy of solvation -72.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds