Wall clock time and date at job start Mon Mar 30 2020 07:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 120.00205 * 2 1 4 4 H 1.48503 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47176 * 299.99951 * 3 2 1 6 6 H 1.48491 * 109.47265 * 59.99913 * 3 2 1 7 7 C 1.37881 * 119.99373 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99399 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00254 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.66562 * 61.76089 * 9 7 2 11 11 C 1.55004 * 110.75136 * 298.54667 * 9 7 2 12 12 C 1.55816 * 102.79049 * 241.67569 * 11 9 7 13 13 H 1.08997 * 115.38815 * 158.83559 * 12 11 9 14 14 O 1.46540 * 101.24111 * 32.41794 * 12 11 9 15 15 C 1.46532 * 99.68252 * 305.83711 * 14 12 11 16 16 H 1.09003 * 115.68032 * 179.65438 * 15 14 12 17 17 C 1.55818 * 101.24765 * 305.84471 * 15 14 12 18 18 H 1.08999 * 110.74354 * 274.09338 * 17 15 14 19 19 C 1.50696 * 110.75069 * 150.73902 * 17 15 14 20 20 O 1.20827 * 119.99957 * 17.65365 * 19 17 15 21 21 O 1.34230 * 120.00199 * 197.64459 * 19 17 15 22 22 C 1.55007 * 102.78589 * 32.41554 * 17 15 14 23 23 H 1.09004 * 110.90153 * 241.60333 * 22 17 15 24 24 C 1.50699 * 110.74681 * 118.33069 * 22 17 15 25 25 O 1.20827 * 119.99633 * 316.70394 * 24 22 17 26 26 O 1.34224 * 120.00381 * 136.71374 * 24 22 17 27 27 H 0.97000 * 119.99595 * 0.02562 * 1 2 3 28 28 H 1.08996 * 110.74505 * 123.34844 * 11 9 7 29 29 H 1.09002 * 110.74490 * 0.02562 * 11 9 7 30 30 H 0.96695 * 116.99935 * 180.02562 * 21 19 17 31 31 H 0.96698 * 117.00578 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6404 -2.5908 -0.8988 11 6 0.3770 -2.6287 1.2730 12 6 0.9687 -3.8900 1.9707 13 1 0.7649 -3.9724 3.0383 14 8 2.3793 -3.7942 1.5854 15 6 2.2317 -3.7030 0.1304 16 1 3.1600 -3.6129 -0.4339 17 6 1.3727 -4.9683 -0.1679 18 1 2.0077 -5.8456 -0.2914 19 6 0.5122 -4.7544 -1.3864 20 8 0.7714 -3.8633 -2.1601 21 8 -0.5420 -5.5539 -1.6124 22 6 0.4988 -5.0978 1.1057 23 1 0.6953 -6.0395 1.6181 24 6 -0.9638 -4.9731 0.7644 25 8 -1.3332 -4.1214 -0.0089 26 8 -1.8561 -5.8081 1.3197 27 1 -0.4849 0.8401 -0.0004 28 1 -0.6685 -2.7880 1.0093 29 1 0.4862 -1.7490 1.9074 30 1 -1.0640 -5.3781 -2.4071 31 1 -2.7828 -5.6892 1.0705 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025983578.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:33 Heat of formation + Delta-G solvation = -181.223665 kcal Electronic energy + Delta-G solvation = -20890.334597 eV Core-core repulsion = 17524.613759 eV Total energy + Delta-G solvation = -3365.720838 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 256.087 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.63317 -39.21987 -38.71299 -35.89902 -35.51088 -32.99467 -32.05323 -29.66668 -29.45424 -25.25075 -23.81748 -22.73869 -20.32238 -20.24432 -19.24307 -17.94545 -17.57217 -16.85626 -16.68479 -15.89768 -15.44894 -15.03342 -14.76389 -14.38661 -13.69372 -13.40710 -13.10833 -12.38909 -12.33808 -12.01951 -11.79898 -11.53382 -11.16587 -10.97152 -10.90609 -10.70566 -10.51693 -10.32098 -10.16001 -9.86083 -9.59715 -9.32772 -8.80312 -8.49130 -8.22132 -5.87567 -3.89015 2.38171 2.90376 3.08695 3.37411 3.44729 3.49356 3.57641 4.44436 4.57898 4.65280 4.84034 5.24270 5.32110 5.44935 5.48978 5.68143 5.81298 5.91166 6.12607 6.46820 6.54050 6.71286 6.80381 6.97360 7.14795 7.32021 7.73159 7.98019 8.15759 8.23617 8.42587 8.53133 9.11312 9.71338 11.21457 Molecular weight = 256.09amu Principal moments of inertia in cm(-1) A = 0.027948 B = 0.008735 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.612452 B = 3204.873462 C = 3267.704461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.501 4.501 8 H 0.055 0.945 9 C 0.017 3.983 10 H 0.081 0.919 11 C -0.141 4.141 12 C 0.062 3.938 13 H 0.128 0.872 14 O -0.359 6.359 15 C 0.082 3.918 16 H 0.131 0.869 17 C -0.099 4.099 18 H 0.118 0.882 19 C 0.492 3.508 20 O -0.477 6.477 21 O -0.529 6.529 22 C -0.103 4.103 23 H 0.111 0.889 24 C 0.490 3.510 25 O -0.476 6.476 26 O -0.518 6.518 27 H 0.256 0.744 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.405 0.595 31 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.403 -13.303 1.926 13.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.539 4.539 8 H 0.074 0.926 9 C -0.001 4.001 10 H 0.099 0.901 11 C -0.178 4.178 12 C 0.004 3.996 13 H 0.145 0.855 14 O -0.278 6.278 15 C 0.024 3.976 16 H 0.149 0.851 17 C -0.119 4.119 18 H 0.135 0.865 19 C 0.333 3.667 20 O -0.362 6.362 21 O -0.342 6.342 22 C -0.123 4.123 23 H 0.129 0.871 24 C 0.332 3.668 25 O -0.362 6.362 26 O -0.330 6.330 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.263 0.737 31 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -1.710 -12.797 2.093 13.079 hybrid contribution -0.750 1.053 -0.698 1.469 sum -2.460 -11.744 1.394 12.080 Atomic orbital electron populations 1.70034 1.05749 1.25981 1.50727 1.24937 0.94812 0.98848 0.95521 0.86588 0.80222 0.84147 0.77337 1.19790 1.21219 1.21253 1.21028 0.92709 0.90151 1.50048 0.92628 1.20836 0.92241 0.91198 0.95787 0.90147 1.23741 1.00790 0.94175 0.99119 1.24706 0.83086 0.93874 0.97918 0.85474 1.90021 1.22911 1.94091 1.20740 1.24852 0.98853 0.92764 0.81105 0.85145 1.22797 0.96099 1.04130 0.88872 0.86459 1.22493 0.78791 0.78614 0.86753 1.90722 1.69958 1.28886 1.46636 1.84432 1.41368 1.58885 1.49529 1.22618 0.87429 1.03999 0.98258 0.87082 1.22742 0.88736 0.77862 0.77490 1.90724 1.80210 1.32727 1.32552 1.84489 1.22184 1.57779 1.68577 0.93382 0.90367 0.90789 0.73656 0.73623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 12.38 55.43 0.69 -26.05 16 2 C 0.06 1.74 5.12 -17.81 -0.09 1.65 16 3 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.50 -14.39 8.52 -34.44 -0.29 -14.68 16 8 H 0.06 1.58 7.78 -52.49 -0.41 1.17 16 9 C 0.02 0.45 1.79 -89.21 -0.16 0.29 16 10 H 0.08 2.31 4.44 -51.99 -0.23 2.08 16 11 C -0.14 -3.35 4.85 -24.17 -0.12 -3.47 16 12 C 0.06 1.16 5.47 -23.73 -0.13 1.03 16 13 H 0.13 1.98 8.14 -51.93 -0.42 1.55 16 14 O -0.36 -7.44 11.65 -35.23 -0.41 -7.85 16 15 C 0.08 1.71 4.54 -23.72 -0.11 1.61 16 16 H 0.13 2.62 8.14 -51.93 -0.42 2.20 16 17 C -0.10 -1.71 3.47 -89.21 -0.31 -2.02 16 18 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 19 C 0.49 9.23 4.91 36.00 0.18 9.41 16 20 O -0.48 -10.89 14.50 -18.75 -0.27 -11.16 16 21 O -0.53 -8.04 10.22 -47.25 -0.48 -8.52 16 22 C -0.10 -1.65 3.46 -89.21 -0.31 -1.96 16 23 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 24 C 0.49 8.01 5.06 36.01 0.18 8.20 16 25 O -0.48 -9.51 10.83 -26.74 -0.29 -9.80 16 26 O -0.52 -6.49 13.42 -39.24 -0.53 -7.02 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 28 H 0.08 1.93 4.62 -51.95 -0.24 1.69 16 29 H 0.07 1.97 7.34 -51.93 -0.38 1.59 16 30 H 0.40 4.85 9.10 45.56 0.41 5.27 16 31 H 0.41 3.43 9.10 45.56 0.41 3.84 16 LS Contribution 254.32 15.07 3.83 3.83 Total: -1.00 -35.55 254.32 -4.90 -40.45 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -1.26 Total: 8.82 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.16 Total: 0.05 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.69 Total: -26.05 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.98 Total: -44.35 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -35.55 -4.90 -40.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025983578.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.775 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds